PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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2,147 citations
Cites background from "PLINK: A Tool Set for Whole-Genome ..."
...In Section 3, we see that these inference criteria work well in practice....
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...Received on June 9, 2010; revised on September 24, 2010; accepted on September 27, 2010...
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2,147 citations
Cites methods from "PLINK: A Tool Set for Whole-Genome ..."
...The CD data set was then analysed using MAGMA and with five commonly used other tools for gene and gene-set analyses, specifically VEGAS [17], PLINK [8], ALIGATOR [9], INRICH [10] and MAGENTA [12]....
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...Various methods for gene and gene-set analysis are currently available [7–13]....
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Cites methods from "PLINK: A Tool Set for Whole-Genome ..."
...…(a) single marker chi-squared association tests, (b) single and multi-marker association tests [Pe’er et al., 2006] as suggested by the PLINK [Purcell et al., 2007] program based on the simulated HapMap, or (c) tests using imputed allele counts for all the markers in the simulated HapMap....
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...Finally, we analyzed each of the simulated datasets using the selected marker panel and one of three analysis strategies: (a) single marker chi-squared association tests, (b) single and multi-marker association tests [Pe’er et al., 2006] as suggested by the PLINK [Purcell et al., 2007] program based on the simulated HapMap, or (c) tests using imputed allele counts for all the markers in the simulated HapMap....
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1,953 citations
References
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"PLINK: A Tool Set for Whole-Genome ..." refers methods in this paper
...org The American Journal of Human Genetics Volume 81 September 2007 565 multiple-test corrections are also available, including those based on Bonferroni correction and false-discovery rate.(31) IBD estimation....
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