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Predicting and replacing the pathological Gleason grade with automated gland ring morphometric features from immunofluorescent prostate cancer images

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TLDR
This work presents the first assessment of morphological gland unit features from IF images for predicting the Gleason grade, and even replacing it in prostate cancer prognostics.
Abstract
The Gleason grade is the most common architectural and morphological assessment of prostate cancer severity and prognosis. There have been numerous algorithms developed to approximate and duplicate the Gleason scoring system, mostly developed in standard H&E brightfield microscopy. Immunofluorescence (IF) image analysis of tissue pathology has recently been proven to be robust in developing prognostic assessments of disease, particularly in prostate cancer. We leverage a method of segmenting gland rings in IF images for predicting the pathological Gleason, both the clinical and the image specific grades, which may not necessarily be the same. We combine these measures with nuclear specific characteristics. In 324 images from 324 patients, our individual features correlate well univariately with the Gleason grades and in a multivariate setting have an accuracy of 85% in predicting the Gleason grade. Additionally, these features correlate strongly with clinical progression outcomes [concordance index (CI) of 0.89], significantly outperforming the clinical Gleason grades (CI of 0.78). Finally, in multivariate models for multiple prostate cancer progression endpoints, replacing the Gleason with these features results in equivalent or improved performances. This work presents the first assessment of morphological gland unit features from IF images for predicting the Gleason grade, and even replacing it in prostate cancer prognostics.

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Journal ArticleDOI

A graph-based lesion characterization and deep embedding approach for improved computer-aided diagnosis of nonmass breast MRI lesions.

TL;DR: The combination of unsupervised dimensionality reduction and embedded space clustering followed by a supervised classifier to improve the performance of a CAD system for nonmass‐like lesions in breast MRI is proposed.
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Histopathological Image QTL Discovery of Immune Infiltration Variants

TL;DR: It is shown that quantitative image features, automatically extracted from histopathological imaging data, can be used for image quantitative trait loci (iQTLs) mapping and variant discovery.
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Cribriform pattern detection in prostate histopathological images using deep learning models

TL;DR: An annotated cribriform dataset is presented along with analysis of deep learning models and hand-crafted features for crib riform pattern detection in prostate histopathological images.
Posted ContentDOI

Histopathological image QTL discovery of immune infiltration variants

TL;DR: It is shown that unbiased quantitative image features, automatically extracted from histopathological imaging data, can be used successfully for image Quantitative Trait Loci (iQTL) mapping and disease variant discovery.
References
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Journal ArticleDOI

Automated subcellular localization and quantification of protein expression in tissue microarrays.

TL;DR: A set of algorithms that allow the rapid, automated, continuous and quantitative analysis of tissue microarrays, including the separation of tumor from stromal elements and the sub-cellular localization of signals, are developed.
Proceedings ArticleDOI

Automated grading of prostate cancer using architectural and textural image features

TL;DR: This work suggests that the current Gleason grading scheme can be improved by utilizing quantitative image analysis to aid pathologists in producing an accurate and reproducible diagnosis.
Proceedings ArticleDOI

Support Vector Regression for Censored Data (SVRc): A Novel Tool for Survival Analysis

TL;DR: A novel machine learning algorithm, support vector regression for censored data (SVRc) is proposed, which achieves significant improvement in overall accuracy as well as in the ability to identify high-risk and low-risk patient populations.
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