Predicting marine phytoplankton community size structure from empirical relationships with remotely sensed variables
TL;DR: In this article, the authors describe relationships between the environment and the size composition of phytoplankton communities, using a collation of empirical measurements of size composition from sites that include polar, tropical and upwelling environments.
Abstract: The size composition of primary producers has a potential influence on the length of marine food chains and carbon sinking rates, thus on the proportion of primary production (PP) that is removed from the upper layers and available to higher trophic levels. While total rates of PP are widely reported, it is also necessary to account for the size composition of primary producers when developing food web models that predict consumer biomass and production. Empirical measurement of size composition over large space and time scales is not feasible, so one approach is to predict size composition from environmental variables that are measured and reported on relevant scales. Here, we describe relationships between the environment and the size composition of phytoplankton communities, using a collation of empirical measurements of size composition from sites that include polar, tropical and upwelling environments. The size composition of the phytoplankton communities can be predicted using two remotely sensed variables, chlorophyll-a concentration and sea surface temperature. Applying such relationships in combination allows prediction of the slope and location of phytoplankton size spectra and estimation of the percentage of different sized phytoplankton groups in communities.
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5 citations
Dissertation•
01 Jan 2019
TL;DR: In this article, the authors used a comprehensive monitoring dataset from the restoring Nisqually River Delta in southern Puget Sound, Washington to study the effects of climate change on the growth and survival of juvenile Chinook salmon.
Abstract: Dynamic habitat models for estuary-dependent Chinook salmon: informing management in the face of climate impacts Melanie Jeanne Davis Co-chairs of the Supervisory Committee: Dr. Julian D. Olden Dr. David A. Beauchamp A complex mosaic of estuarine habitats is postulated to bolster the growth and survival of juvenile Chinook salmon by diversifying the availability and configuration of prey and refugia. Consequently, efforts are underway along the North American Pacific Coast to return modified coastal ecosystems to historical or near-historical conditions, but restoring habitats are often more sensitive to anthropogenic or climate-mediated disturbance than relict (unaltered) habitats. Estuaries are expected to experience longer inundation durations as sea-levels rise, leading to reductions in intertidal emergent marshes, mudflats, and eelgrass beds. Furthermore, rising ocean temperatures may have metabolic consequences for fall-run populations of Chinook salmon, which tend to out-migrate during the spring and summer. Extensive monitoring programs have allowed managers to assess the initial benefits of management efforts (including restoration) for juvenile salmon at local and regional scales, but at present they have limited options for predicting and responding to the concurrent effects of climate change in restoring and relict coastal ecosystems. For my dissertation I addressed this gap in knowledge using a comprehensive monitoring dataset from the restoring Nisqually River Delta in southern Puget Sound, Washington. I focused on the following questions: 1) How do juvenile Chinook salmon prey consumption and dietary energy density vary throughout a mosaic of estuarine habitats, and is this variation related to differences in physiological condition? 2) How do among-habitat differences in thermal regime and prey consumption affect the bioenergetic growth potential of juvenile Chinook salmon? 3) How will shifts in the estuarine habitat mosaic vary under different sea-level rise and management scenarios? and 4) How will these climateand management-mediated shifts in the estuarine habitat mosaic impact habitat quality for juvenile Chinook salmon? To address the first question, I used stomach content and stable isotope analyses to analyze the diets of wild and hatchery Chinook salmon captured in different estuarine habitats during the out-migration season (March–July of 2014 and 2015). I also linked measures of stomach fullness and dietary energy density to body condition. To address the second question, I used a bioenergetics model to determine how among-habitat differences in water temperature and diet might affect juvenile Chinook salmon growth. To address the third question, I designed and calibrated a marsh accretion model and decision support tool using post-restoration monitoring data sets and spatial coverages. Finally, to address the fourth question, I combined output from the marsh accretion model, a hydrological model, and measurements of prey availability into a spatially explicit version of the bioenergetics model to assess the habitat quality and growth rate potential of the entire estuarine habitat mosaic under different sea-level rise and management scenarios. When considered in tandem, these chapters represent a novel approach to habitat management. Assessments of juvenile salmon diet and physiology, marsh accretion models, and bioenergetics models have been independently implemented along the Pacific Coast, but the amalgamation of all three approaches into a single, spatially explicit analysis represents a novel and significant contribution to the scientific literature. In conducting these analyses for the Nisqually River Delta, some major themes emerged regarding the importance and vulnerability of specific habitats. An integrative diet analysis using stomach contents and stable isotopes found distinct dietary niches between wild and hatchery Chinook salmon. Wild fish were more likely to utilize the freshwater tidal forested and transitional brackish marsh habitats along the main stem river, where energy-rich insect drift made up most of their dietary biomass. The availability and consumption of insect prey resulted in distinct benefits to body condition and growth, as determined by direct physiological measurements and output from the habitat-specific bioenergetics model. These findings highlight the importance of freshwater and brackish emergent marsh habitats with overhanging vegetation, which can regulate water temperatures and supply insect drift. Unfortunately, freshwater tidal forests, brackish marshes, and low and high elevation emergent salt marshes are highly vulnerable to sea-level rise, especially when geological and anthropogenic features limit sediment accretion or lateral expansion. When spatial layers from the marsh accretion model were incorporated into the spatially explicit version of the bioenergetics model, output indicated that loss of low and high salt marsh reduced the amount of prey available for juvenile salmon, thus decreasing modeled growth rate potential. In all, these findings highlight the importance of preserving the estuarine habitat mosaic for outmigrating juvenile salmon, especially as tidal regimes and ocean temperatures continue to shift through time.
4 citations
TL;DR: In this paper, a spatially explicit model with a numerical foundation that uses empirical monitoring datasets to forecast habitat change in response to rising tidal levels is proposed, which can be used to determine whether alternative management scenarios, such as enhanced sediment inputs, will bolster estuarine resilience to sea-level rise.
4 citations
TL;DR: Using a trait-based marine ecosystem model resolving key zooplankton groups, this paper found that future oceans, particularly in tropical regions, favor food webs increasingly dominated by carnivorous (chaetognaths, jellyfish and carnivorous copepods) and gelatinous filter-feeding zoop-lanks (larvaceans and salps) at the expense of omnivorous copeps and euphausiids.
Abstract: Abstract Zooplankton are the primary energy pathway from phytoplankton to fish. Yet, there is limited understanding about how climate change will modify zooplankton communities and the implications for marine food webs globally. Using a trait-based marine ecosystem model resolving key zooplankton groups, we find that future oceans, particularly in tropical regions, favour food webs increasingly dominated by carnivorous (chaetognaths, jellyfish and carnivorous copepods) and gelatinous filter-feeding zooplankton (larvaceans and salps) at the expense of omnivorous copepods and euphausiids. By providing a direct energetic pathway from small phytoplankton to fish, the rise of gelatinous filter feeders partially offsets the increase in trophic steps between primary producers and fish from declining phytoplankton biomass and increases in carnivorous zooplankton. However, future fish communities experience reduced carrying capacity from falling phytoplankton biomass and less nutritious food as environmental conditions increasingly favour gelatinous zooplankton, slightly exacerbating projected declines in small pelagic fish biomass in tropical regions by 2100.
4 citations
01 Jan 2017
TL;DR: The term functional types (PFT) emerged from biogeochemical studies as discussed by the authors and represents the aggregation of organisms according to some well-defined property that sets a role or function for them in a system.
Abstract: The term “functional types” emerged from biogeochemical studies. It represents the
group of organisms that share common characteristic role in biogeochemical functions. In
ecology, a functional type or group represents an aggregation of organisms according to
some well-defined property that sets a role or “function” for them in a system. Phytoplankton
Functional types (PFT) are defined as a group of organisms (irrespective of taxonomic
affiliation) that carry out a particular chemical process such as calcification, silicification,
nitrogen fixation, or dimethyl sulfide production; they are also referred to as “biogeochemical
guilds”. For example, in Nitrogen-Phytoplankton-Zooplankton (NPZ) models, P and Z are
representatives of functional types, i.e., producers and consumers. This aggregation is
acceptable for some applications, but may be too coarse or even inappropriate for others.
3 citations
References
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TL;DR: If the organisms are randomly distributed, a single count is sufficient to obtain an estimate of their abundance and confidence limits for this estimate, even if pipetting, dilution or concentration are involved.
Abstract: Various methods for the estimation of populations of algae and other small freshwater organisms are described. A method of counting is described in detail. It is basically that of Utermohl and uses an inverted microscope. If the organisms are randomly distributed, a single count is sufficient to obtain an estimate of their abundance and confidence limits for this estimate, even if pipetting, dilution or concentration are involved. The errors in the actual counting and in converting colony counts to cell numbers are considered and found to be small relative to the random sampling error. Data are also given for a variant of Utermohl's method using a normal microscope and for a method of using a haemocytometer for the larger plankton algae.
2,572 citations
"Predicting marine phytoplankton com..." refers background or methods in this paper
...Sub-samples (100 ml) were settled (Utermıhl technique (Lund et al. 1958)) and individuals counted at the species level with an inverted microscope....
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...technique (Lund et al. 1958)) and individuals counted at the species level with an inverted...
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TL;DR: Cellular carbon and nitrogen content and cell volume of nutritionally and morphologically diverse dinoflagellate species were measured to determine carbon to volume and nitrogen to volume relationships.
Abstract: Cellular carbon and nitrogen content and cell volume of nutritionally and morphologically diverse dinoflagellate species were measured to determine carbon to volume (C : vol) and nitrogen to volume (N : vol) relationships. Cellular C and N content ranged from 48 to 3.0 3 10 4 pgC cell 21 21 5
2,137 citations
"Predicting marine phytoplankton com..." refers background in this paper
...0 −− = µvolumeyearCpg Equation 5 reported for taxonomically diverse protist plankton (Menden-Deuer and Lessard 2000)....
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...reported for taxonomically diverse protist plankton (Menden-Deuer and Lessard 2000)....
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TL;DR: In this paper, an estimate of global net primary production in the ocean has been computed from the monthly mean near-surface chlorophyll fields for 1979-1986 obtained by the Nimbus 7 CZCS radiometer.
Abstract: An estimate of global net primary production in the ocean has been computed from the monthly mean near-surface chlorophyll fields for 1979-1986 obtained by the Nimbus 7 CZCS radiometer. Our model required information about the subsurface distribution of chlorophyll, the parameters of the photosynthesis-light relationship, the sun angle and cloudiness. The computations were partitioned among 57 biogeochemical provinces that were specified from regional oceanography and by examination of the chlorophyll fields. Making different assumptions about the overestimation of chlorophyll by the CZCS in turbid coastal areas, the global net primary production from phytoplankton is given as 45-50 Gt C year"1. This may be compared with current published estimates for land plants of 45-68 Gt C year"' and for coastal vegetation of 1.9 Gt C year"1.
1,381 citations
"Predicting marine phytoplankton com..." refers background or methods in this paper
...All changes from the implementation of Longhurst et al. (Longhurst et al. 1995) are detailed in Mélin (Mélin 2003)....
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...ocean area (Longhurst et al. 1995), and to regional differences in phytoplankton community...
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...PP was computed from a wavelength- and depthresolved model (Mélin 2003), building on the approach of Longhurst et al. (Longhurst et al. 1995)....
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...This is due to variations in absolute productivity among regions, with 50% of production estimated to come from 27% of ocean area (Longhurst et al. 1995), and to regional differences in phytoplankton community structure....
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...(Longhurst et al. 1995) are detailed in Mélin (Mélin 2003)....
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TL;DR: This study provides evidence that reduced body size is the third universal ecological response to global warming in aquatic systems besides the shift of species ranges toward higher altitudes and latitudes and the seasonal shifts in life cycle events.
Abstract: Understanding the ecological impacts of climate change is a crucial challenge of the twenty-first century. There is a clear lack of general rules regarding the impacts of global warming on biota. Here, we present a metaanalysis of the effect of climate change on body size of ectothermic aquatic organisms (bacteria, phyto- and zooplankton, and fish) from the community to the individual level. Using long-term surveys, experimental data and published results, we show a significant increase in the proportion of small-sized species and young age classes and a decrease in size-at-age. These results are in accordance with the ecological rules dealing with the temperature–size relationships (i.e., Bergmann's rule, James' rule and Temperature–Size Rule). Our study provides evidence that reduced body size is the third universal ecological response to global warming in aquatic systems besides the shift of species ranges toward higher altitudes and latitudes and the seasonal shifts in life cycle events.
1,292 citations
"Predicting marine phytoplankton com..." refers background in this paper
...There is evidence that reduced body size is the third universal ecological response to global warming besides the shift of species ranges toward higher altitudes and latitudes and the seasonal shifts in life-cycle events (Daufresne et al. 2009)....
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...higher altitudes and latitudes and the seasonal shifts in life-cycle events (Daufresne et al. 2009)....
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TL;DR: In this paper, the frequency distributions of particIe size between sizes of about I and 100 p are given for both surface and deep water of the Atlantic and Pacific Oceans.
Abstract: Frequency distributions of particIe size between sizes of about I and 100 p are given for both surface and deep water of the Atlantic and Pacific Oceans. The form of the size spectra varies predictably both geographically and with depth. A hypothesis is presented to show that, to a first approximation, roughly equal concentrations of material occur at all particle sizes within the range from 1 p to about 10” p, i.e. from bacteria to whales.
1,116 citations