Programmatic access to bioinformatics tools from EMBL-EBI update: 2017.
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References
57,055 citations
"Programmatic access to bioinformati..." refers methods in this paper
...Finally, simple phylogeny, which is used for generating phylogenetic trees using Neighbor-Joining (32) and UPGMA (33) methods....
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27,771 citations
"Programmatic access to bioinformati..." refers background in this paper
...At present, tools include sequence similarity search services (https://www.ebi.ac.uk/Tools/sss/) such as BLAST (4), FASTA (5) and PSI-Search (6), multiple sequence alignment tools (https://www.ebi.ac.uk/Tools/msa/) such as Clustal Omega (7), MAFFT (8) and KAlign (9), and other sequence analysis tools (https://www.ebi.ac.uk/Tools/ pfa/) such as InterProScan5 (10)....
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...uk/Tools/msa/) such as Clustal Omega (7), MAFFT (8) and KAlign (9), and other sequence analysis tools (https://www....
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25,325 citations
13,223 citations
"Programmatic access to bioinformati..." refers background in this paper
...At present, tools include sequence similarity search services (https://www.ebi.ac.uk/Tools/sss/) such as BLAST (4), FASTA (5) and PSI-Search (6), multiple sequence alignment tools (https://www.ebi.ac.uk/Tools/msa/) such as Clustal Omega (7), MAFFT (8) and KAlign (9), and other sequence analysis tools (https://www.ebi.ac.uk/Tools/ pfa/) such as InterProScan5 (10)....
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...uk/Tools/sss/) such as BLAST (4), FASTA (5) and PSI-Search (6), multiple sequence alignment tools (https://www....
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...This is followed by the BLAST+ programs, which give access to ∼45 000 libraries of sequences from ENA, UniProt and EnsemblGenomes....
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12,489 citations
"Programmatic access to bioinformati..." refers background in this paper
...At present, tools include sequence similarity search services (https://www.ebi.ac.uk/Tools/sss/) such as BLAST (4), FASTA (5) and PSI-Search (6), multiple sequence alignment tools (https://www.ebi.ac.uk/Tools/msa/) such as Clustal Omega (7), MAFFT (8) and KAlign (9), and other sequence analysis tools (https://www.ebi.ac.uk/Tools/ pfa/) such as InterProScan5 (10)....
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...Clustal Omega and Muscle are the most popular multiple sequence alignment methods. water and needle from the EMBOSS suite give access to local and global pairwise alignments methods. seqret is very popular for sequence reformatting, pfamscan for searching Pfam HMMs and Phobius (31) for predicting transmembrane regions and signal peptides....
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...uk/Tools/msa/) such as Clustal Omega (7), MAFFT (8) and KAlign (9), and other sequence analysis tools (https://www....
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