Races of common bean (Phaseolus vulgaris, Fabaceae)
TL;DR: Multivariate statistical analyses of morphological, agronomic, and molecular data, as well as other available information on Latin American landraces representing various geographical and ecological regions of their primary centers of domestications in the Americas, reveal the existence of two major groups of germplasm: Middle American and Andean South American, which could be further divided into six races.
Abstract: Evidence for genetic diversity in cultivated common bean (Phaseolus vulgaris) is reviewed. Multivariate statistical analyses of morphological, agronomic, and molecular data, as well as other available information on Latin American landraces representing various geographical and ecological regions of their primary centers of domestications in the Americas, reveal the existence of two major groups of germplasm: Middle American and Andean South American, which could be further divided into six races. Three races originated in Middle America (races Durango, Jalisco, and Mesoamerica) and three in Andean South America (races Chile, Nueva Granada, and Peru). Their distinctive characteristics and their relationships with previously reported gene pools are discussed.
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TL;DR: In some areas of Latin America, inoculation which normally promotes nodulation and nitrogen fixation is hampered by the prevalence of native strains such as R. etli and R. giardinii as discussed by the authors.
Abstract: Common bean (Phaseolus vulgaris) has become a cosmopolitan crop, but was originally domesticated in the Americas and has been grown in Latin America for several thousand years. Consequently an enormous diversity of bean nodulating bacteria have developed and in the centers of origin the predominant species in bean nodules is R. etli. In some areas of Latin America, inoculation, which normally promotes nodulation and nitrogen fixation is hampered by the prevalence of native strains. Many other species in addition to R. etli have been found in bean nodules in regions where bean has been introduced. Some of these species such as R. leguminosarum bv. phaseoli, R. gallicum bv. phaseoli and R. giardinii bv. phaseoli might have arisen by acquiring the phaseoli plasmid from R. etli. Others, like R. tropici, are well adapted to acid soils and high temperatures and are good inoculants for bean under these conditions. The large number of rhizobia species capable of nodulating bean supports that bean is a promiscuous host and a diversity of bean-rhizobia interactions exists. Large ranges of dinitrogen fixing capabilities have been documented among bean cultivars and commercial beans have the lowest values among legume crops. Knowledge on bean symbiosis is still incipient but could help to improve bean biological nitrogen fixation.
1,641 citations
TL;DR: An international consortium called `Phaseomics' is formed to establish the necessary framework of knowledge and materials that will result in disease-resistant, stress-tolerant, high-quality protein and high-yielding beans, which will be instrumental in improving living conditions in deprived regions of Africa and the Americas.
Abstract: Globally, 800 million people are malnourished. Heavily subsidised farmers in rich countries produce sufficient surplus food to feed the hungry, but not at a price the poor can afford. Even donating the rich world's surplus to the poor would not solve the problem. Most poor people earn their living from agriculture, so a deluge of free food would destroy their livelihoods. Thus, the only answer to world hunger is to safeguard and improve the productivity of farmers in poor countries. Diets of subsistence level farmers in Africa and Latin America often contain sufficient carbohydrates (through cassava, corn/maize, rice, wheat, etc.), but are poor in proteins. Dietary proteins can take the form of scarce animal products (eggs, milk, meat, etc.), but are usually derived from legumes (plants of the bean and pea family). Legumes are vital in agriculture as they form associations with bacteria that `fix-nitrogen' from the air. Effectively this amounts to internal fertilisation and is the main reason that legumes are richer in proteins than all other plants. Thousands of legume species exist but more common beans (Phaseolus vulgaris L.) are eaten than any other. In some countries such as Mexico and Brazil, beans are the primary source of protein in human diets. As half the grain legumes consumed worldwide are common beans, they represent the species of choice for the study of grain legume nutrition. Unfortunately, the yields of common beans are low even by the standards of legumes, and the quality of their seed proteins is sub-optimal. Most probably this results from millennia of selection for stable rather than high yield, and as such, is a problem that can be redressed by modern genetic techniques. We have formed an international consortium called `Phaseomics' to establish the necessary framework of knowledge and materials that will result in disease-resistant, stress-tolerant, high-quality protein and high-yielding beans. Phaseomics will be instrumental in improving living conditions in deprived regions of Africa and the Americas. It will contribute to social equity and sustainable development and enhance inter- and intra-cultural understanding, knowledge and relationships. A major goal of Phaseomics is to generate new common bean varieties that are not only suitable for but also desired by the local farmer and consumer communities. Therefore, the socio-economic dimension of improved bean production and the analysis of factors influencing the acceptance of novel varieties will be an integral part of the proposed research (see Figure 1). Here, we give an overview of the economic and nutritional importance of common beans as a food crop. Priorities and targets of current breeding programmes are outlined, along with ongoing efforts in genomics. Recommendations for an international coordinated effort to join knowledge, facilities and expertise in a variety of scientific undertakings that will contribute to the overall goal of better beans are given. To be rapid and effective, plant breeding programmes (i.e., those that involve crossing two different `parents') rely heavily on molecular `markers'. These genetic landmarks are used to position
1,255 citations
United States Department of Energy1, North Dakota State University2, United States Department of Agriculture3, University of Georgia4, Institut national de la recherche agronomique5, Tennessee State University6, Colorado State University7, University of California, Davis8, Michigan State University9, University of Arizona10, University of Paris-Sud11, University of Nebraska–Lincoln12
TL;DR: 2 independent domestications from genetic pools that diverged before human colonization are confirmed and a set of genes linked with increased leaf and seed size are identified and combined with quantitative trait locus data from Mesoamerican cultivars.
Abstract: Common bean (Phaseolus vulgaris L.) is the most important grain legume for human consumption and has a role in sustainable agriculture owing to its ability to fix atmospheric nitrogen. We assembled 473 Mb of the 587-Mb genome and genetically anchored 98% of this sequence in 11 chromosome-scale pseudomolecules. We compared the genome for the common bean against the soybean genome to find changes in soybean resulting from polyploidy. Using resequencing of 60 wild individuals and 100 landraces from the genetically differentiated Mesoamerican and Andean gene pools, we confirmed 2 independent domestications from genetic pools that diverged before human colonization. Less than 10% of the 74 Mb of sequence putatively involved in domestication was shared by the two domestication events. We identified a set of genes linked with increased leaf and seed size and combined these results with quantitative trait locus data from Mesoamerican cultivars. Genes affected by domestication may be useful for genomics-enabled crop improvement.
1,012 citations
TL;DR: This article reviewed current and past efforts in breeding for industrial quality (processing, malting, baking, extruding, etc.) as a prelude to discussion of the criteria that need to be met in breeding programs to improve the nutritional quality of crops for human consumption.
543 citations
References
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TL;DR: The authors' data favor 2 primary areas of domestication, one in Middle America leading to small-seeded cultivars with ‘S’ phaseolin patterns and the other in the Andes giving rise to large-seeding cultivarsWith ‘T’ (and possibly ‘C,’ ‘H,” and ‘A’) phaseolinpatterns.
Abstract: A sample of 106 wild forms and 99 landraces of common bean (Thaseolus vulgaris) from Middle America and the Andean region of South America were screened for variability in phaseolin seed protein using one-dimensional sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS/PAGE) and two-dimensional isoelectric focusing SDS/PAGE. The Middle American wild forms exhibited phaseolin patterns similar to the ‘S’ pattern described previously in cultivated forms, as well as a wide variety of additional banding patterns—‘M’ (Middle America) types—not encountered among common bean cultivars. The Andean wild forms showed only the ‘T’ phaseolin pattern, also described previously among cultivated forms. Landraces from Middle America showed ‘S’ or ‘S’-like patterns with the exception of 2 lines with ‘T’ phaseolin. In Andean South America, a majority of landraces had the ‘T’ phaseolin. Additional types represented in that region were (in decreasing order of frequency) the ‘S’ and ‘C’ types (already described among cultivated forms) as well as the ‘H’ (Huevo de huanchaco) and ‘A’ (Ayacucho), (new patterns previously undescribed among wild and cultivated beans). In each region—Middle America and Andean South America—the seeds of landraces with ‘T’ phaseolin were significantly larger than those of landraces with ‘S’ phaseolin. No significant differences in seed size were observed among landraces with ‘T,’ ‘C,’ ‘H,’ and ‘A’ phaseolin types of the Andean region. Our data favor 2 primary areas of domestication, one in Middle America leading to small-seeded cultivars with ‘S’ phaseolin patterns and the other in the Andes giving rise to large-seeded cultivars with ‘T’ (and possibly ‘C,’ ‘H,’ and ‘A’) phaseolin patterns.
493 citations
Book•
01 Jan 1991
TL;DR: Origin, evolution, systematics and morphology of common bean cultivars and genetics breeding for seed yield, insect and disease resistance, food quality factors and drought resistance cropping systems - intercropping and monoculture on-farm research, including the Great Lakes Regional Bean Project.
Abstract: Origin, evolution, systematics and morphology of common bean cultivars and genetics breeding for seed yield, insect and disease resistance, food quality factors and drought resistance cropping systems - intercropping and monoculture on-farm research, including the Great Lakes Regional Bean Project.
323 citations
TL;DR: This study examined the organization of diversity for morphological and agronomic characteristics in 306 landraces of cultivated common bean (Phaseolus vulgaris L.) from Latin America and its relationship with phaseolin seed protein and allozyme diversity of the landrace.
Abstract: Knowledge of patterns of genetic diversity enhances the efficiency of germplasm conservation and improvement. This study examined the organization of diversity for morphological and agronomic characteristics in 306 landraces of cultivated common bean (Phaseolus vulgaris L.) from Latin America and its relationship with phaseolin seed protein and allozyme diversity of the landraces. Data on pigmentation, growth habit, and leaflet, pod, seed, and phenology traits, as well as reaction to four important diseases and an insect pest, obtained from field evaluations at three locations in Colombia during the 1987-1988 cropping season, were analyzed by multivariate statistical analyses
321 citations
01 Jan 1991
314 citations
TL;DR: Confirmation that cultivated common bean (Phaseolus vulgaris L.) resulted from multiple domestications in Mesoamerica and in Andean South America was sought by analyzing patterns of diversity at nine polymorphic allozyme loci, all unlinked to the phaseolin locus.
Abstract: Previous studies using phaseolin seed protein as a marker have revealed that cultivated common bean (Phaseolus vulgaris L.) resulted from multiple domestications in Mesoamerica and in Andean South America. Because these studies were based on variation at a single locus, confirmation was sought by analyzing patterns of diversity at nine polymorphic allozyme loci, all unlinked to the phaseolin locus: ribulose bisphophate carboxylase, shikimate dehydrogenase, cathodal peroxidase, malic enzyme, malate dehydrogenase (two loci), diaphorase (two loci) and leucine aminopeptidase
258 citations