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Open AccessJournal ArticleDOI

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

John L. Woolford, +1 more
- 01 Nov 2013 - 
- Vol. 195, Iss: 3, pp 643-681
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TLDR
Yeast ribosome biogenesis provide useful models for ribosomopathies, diseases in humans that result from failure to properly assemble ribosomes.
Abstract
Ribosomes are highly conserved ribonucleoprotein nanomachines that translate information in the genome to create the proteome in all cells. In yeast these complex particles contain four RNAs (>5400 nucleotides) and 79 different proteins. During the past 25 years, studies in yeast have led the way to understanding how these molecules are assembled into ribosomes in vivo. Assembly begins with transcription of ribosomal RNA in the nucleolus, where the RNA then undergoes complex pathways of folding, coupled with nucleotide modification, removal of spacer sequences, and binding to ribosomal proteins. More than 200 assembly factors and 76 small nucleolar RNAs transiently associate with assembling ribosomes, to enable their accurate and efficient construction. Following export of preribosomes from the nucleus to the cytoplasm, they undergo final stages of maturation before entering the pool of functioning ribosomes. Elaborate mechanisms exist to monitor the formation of correct structural and functional neighborhoods within ribosomes and to destroy preribosomes that fail to assemble properly. Studies of yeast ribosome biogenesis provide useful models for ribosomopathies, diseases in humans that result from failure to properly assemble ribosomes.

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Citations
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Journal ArticleDOI

A census of human RNA-binding proteins.

TL;DR: This work presents a census of 1,542 manually curated RBPs that are analysed for their interactions with different classes of RNA, their evolutionary conservation, their abundance and their tissue-specific expression, a critical step towards the comprehensive characterization of proteins involved in human RNA metabolism.
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Ribosome biogenesis in cancer: new players and therapeutic avenues

TL;DR: The most recent findings that provide new insights into the molecular basis of ribosome biogenesis in cancer are highlighted and the perspective on how these observations present opportunities for the design of new targeted cancer treatments is offered.
Journal ArticleDOI

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function

TL;DR: Changes in the rRNA modification pattern have been observed in response to environmental changes, during development, and in disease, which suggests that rRNA modifications may contribute to the translational control of gene expression.
Journal ArticleDOI

RNA transcription modulates phase transition-driven nuclear body assembly

TL;DR: The assembly dynamics of liquid-phase nuclear bodies are quantified and find that they can be explained by classical models of phase separation and coarsening, and rRNA transcription and other nonequilibrium biological activity can modulate the effective thermodynamic parameters governing nucleolar and END assembly, but do not appear to fundamentally alter the passive phase separation mechanism.
Journal ArticleDOI

Ribosome assembly coming into focus.

TL;DR: These studies highlight the roles of RNA compaction, checkpoints and proofreading mechanisms of pre-ribosomal particles in the nucleolus, nucleus and cytoplasm of yeast ribosome assembly intermediates.
References
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Journal ArticleDOI

The economics of ribosome biosynthesis in yeast.

TL;DR: In a rapidly growing yeast cell, 60% of total transcription is devoted to ribosomal RNA, and 50% of RNA polymerase II transcription and 90% of mRNA splicing are devoted to Ribosomal proteins (RPs).
Journal ArticleDOI

Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity.

TL;DR: The specificity with which the genetic code is read in protein synthesis, and with which other highly specific biosynthetic reactions take place, can be increased above the level available from free energy differences in intermediates or kinetic barriers by a process defined here as kinetic proofreading.
Journal ArticleDOI

Mechanical Devices of the Spliceosome: Motors, Clocks, Springs, and Things

TL;DR: This work aims to provide a history of canine coronavirus infection in the context of central giant cell granuloma and aims to establish a cause-and-effect relationship between infection and disease progression.
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The Many Pathways of RNA Degradation

TL;DR: From the earliest comparisons of RNA production with steady-state levels, it has been clear that cells transcribe more RNA than they accumulate, implying the existence of active RNA degradation systems.
Journal ArticleDOI

The Structure of the Eukaryotic Ribosome at 3.0 Å Resolution

TL;DR: The crystal structure of the 80S ribosome from the yeast Saccharomyces cerevisiae is reported, which reveals the architecture of eukaryote-specific elements and their interaction with the universally conserved core, and describes all eukariotes-specific bridges between the two ribosomal subunits.
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