RNA-Seq: a revolutionary tool for transcriptomics
Citations
115 citations
Cites background from "RNA-Seq: a revolutionary tool for t..."
...With the high resolution and sensitivity, the RNA-Seq could be used for discovering novel splice junctions, novel transcripts, alternative transcription start sites and rare transcripts [23]....
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115 citations
115 citations
Cites methods from "RNA-Seq: a revolutionary tool for t..."
...Having established that Tie2-TRAP and TNT-TRAP selectively capture endothelial and cardiomyocyte transcripts, we next evaluated the global gene expression profile of endothelial and cardiomyocyte cells by RNA-seq (Datasets S1 and S2)....
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...We used RNA-seq and the CAG-TRAP: input ratio to provide an unbiased assessment of changes in ribosome occupancy that occur following pressure overload....
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...G and unbiased measurement of RNA transcript levels using microarrays and RNA-seq (1) has powered fundamental advances in biology over the past decade....
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...Poly(A) RNA was analyzed by RNA-seq or quantitative RT-PCR....
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...We evaluated whether or not banding had a significant effect on ribosome binding of lincRNAs by analyzing RNA-seq data on the input and TRAP RNAs of sham or band-operated Rosa26CAG-TRAP mice....
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115 citations
Cites methods from "RNA-Seq: a revolutionary tool for t..."
...The techniques used for these studies required ‘bulk’ analyses of extracts from many cells, be it RNA [5,6], proteins [7] or chromatin [8]....
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115 citations
References
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"RNA-Seq: a revolutionary tool for t..." refers methods in this paper
...There are several programs for mapping reads to the genome, including ELAND, SOA...
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