Single Nucleotide Polymorphism-based Genetic Diversity in the Reference Set of Peanut (Arachis spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays
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Cites methods from "Single Nucleotide Polymorphism-base..."
...…described for Sequence-Based Genotyping (SBG; Truong et al. 2012; Poecke et al. 2013), Diversity Array Technology sequencing (DArTseq; Cruz et al. 2013); RESTriction Fragment SEQuencing (RESTseq; Stolle and Moritz 2013), and Restriction Enzyme Site Comparative Analysis (RESCAN; Kim and Tai 2013)....
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Cites background from "Single Nucleotide Polymorphism-base..."
...Nevertheless, in the few other studies in which large germplasm sets were used reported low levels of diversity in primary gene pools, while better genetic diversity still exists within the wild relatives (Varshney et al., 2009a; Koppolu et al., 2010; Khera et al., 2013)....
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"Single Nucleotide Polymorphism-base..." refers methods in this paper
...Furthermore, tree construction was also accomplished using the sotware Dendroscope version 3.2.2 for better visual representation as detailed in Huson et al. (2007). he lines were then analyzed with respect to the three categories, namely botanical variety, species, and genome type....
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"Single Nucleotide Polymorphism-base..." refers background in this paper
...he SSR markers, which are known for their high polymorphism information content (PIC) and resourcefulness as molecular tools (Gupta and Varshney, 2000), have enabled discrimination and assessment of genetic variation in peanut germplasm revealing very low to moderate levels of polymorphism in cultivated germplasm as compared to wild relatives (Gautami et al....
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"Single Nucleotide Polymorphism-base..." refers background in this paper
...…tools (Gupta and Varshney, 2000), have enabled discrimination and assessment of genetic variation in peanut germplasm revealing very low to moderate levels of polymorphism in cultivated germplasm as compared to wild relatives (Gautami et al., 2009; Varshney et al., 2009a; Koppolu et al., 2010)....
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...In recent years, due to the advent of next-generation sequencing and faster genotyping technologies, new marker systems such as single nucleotide polymorphisms (SNPs) have attracted substantial attention and have emerged as the marker of choice in crop breeding (Varshney et al., 2009b)....
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