TL;DR: The process of building an ontology using social tags shows how using this consumer health ontology could improve user access and retrieval and demonstrates how terms extracted from tags are related to each other with similarity and relationships within hierarches in the ontology.
Abstract: Introduction. The purpose of this paper is to provide a framework for building a consumer health ontology using social tags. This would assist health users when they are accessing health information and increase the number of documents relevant to their needs. Methods. In order to extract concepts from social tags, this study conducted an empirical study on terms collected from a social networking site. The semantics of tags were analyzed and a concept list was developed by using the middle-out strategy. Analysis. This study analysed the semantic values of tags by employing Latent Semantic Analysis (LSA). This is a method for extracting and representing the contextual-usage meaning of words by analyzing relationships between documents and the terms they contain and word semantics. Results. The process of building an ontology using social tags shows how using this consumer health ontology could improve user access and retrieval. It demonstrates how terms extracted from tags are related to each other with similarity and relationships within hierarches in the ontology. Conclusion. The study has implications for better design of ontology applications that support the search for healthrelated resources. This will enhance the communication between health consumers and professionals.
TL;DR: Nasjonalt kunnskapssenter for helsetjenesten, seksjon Helsebiblioteket, har startet arbeidet med a fixmeoversette Medical Subject Headings (MeSH) til norsk as mentioned in this paper.
Abstract: Nasjonalt kunnskapssenter for helsetjenesten, seksjon Helsebiblioteket, har startet arbeidet med a
oversette Medical Subject Headings (MeSH) til norsk.
TL;DR: This thesis is to determine to what degree controlled vocabularies that have been traditionally used in libraries could be utilised in automated classification of textual Web pages, in the context of browsing.
Abstract: Automated subject classification has been a challenging research issue for several decades now. The purpose of this thesis is to determine to what degree controlled vocabularies that have been traditionally used in libraries could be utilised in automated classification of textual Web pages, in the context of browsing. Usefulness of different characteristics of controlled vocabularies for automated classification is explored, such as captions of classes from classification systems and terms from thesauri and/or subject heading systems. The classification algorithm would be developed based on a research article collection, and tested on Web pages.
TL;DR: In this article, a narrated video is coupled with text checklists to walk the student through the proper components and technique of examining a pediatric patient, and a text checklist is used to guide the student in examining the patient.
Abstract: This program is designed to teach medical students the proper components and technique of examining pediatric patients. A narrated video is coupled with text checklists to walk the student...
TL;DR: The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing.
Abstract: Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins in one organism can often be transferred to other organisms. The goal of the Gene Ontology Consortium is to produce a dynamic, controlled vocabulary that can be applied to all eukaryotes even as knowledge of gene and protein roles in cells is accumulating and changing. To this end, three independent ontologies accessible on the World-Wide Web (http://www.geneontology.org) are being constructed: biological process, molecular function and cellular component.
35,225 citations
"Supporting better treatments for me..." refers background in this paper
...(Ashburne et al., 2000) SNOMED CT (Systematised nomenclature of medicine—clinical terms) is a comprehensive clinical terminology, originally created by the College of American Pathologists (CAP)....
TL;DR: This paper describes a mechanism for defining ontologies that are portable over representation systems, basing Ontolingua itself on an ontology of domain-independent, representational idioms.
Abstract: To support the sharing and reuse of formally represented knowledge among AI systems, it is useful to define the common vocabulary in which shared knowledge is represented. A specification of a representational vocabulary for a shared domain of discourse—definitions of classes, relations, functions, and other objects—is called an ontology. This paper describes a mechanism for defining ontologies that are portable over representation systems. Definitions written in a standard format for predicate calculus are translated by a system called Ontolingua into specialized representations, including frame-based systems as well as relational languages. This allows researchers to share and reuse ontologies, while retaining the computational benefits of specialized implementations. We discuss how the translation approach to portability addresses several technical problems. One problem is how to accommodate the stylistic and organizational differences among representations while preserving declarative content. Another is how to translate from a very expressive language into restricted languages, remaining system-independent while preserving the computational efficiency of implemented systems. We describe how these problems are addressed by basing Ontolingua itself on an ontology of domain-independent, representational idioms.
12,962 citations
"Supporting better treatments for me..." refers background in this paper
...An ontology is defined as a formal, explicit specification of a conceptualisation (Gruber, 1993; Studer, Benjamins, & Fensel, 1998):...
[...]
...An ontology is defined as a formal, explicit specification of a conceptualisation (Gruber, 1993; Studer, Benjamins, & Fensel, 1998):
Conceptualisation refers to 'an abstract, simplified view of the world that we wish to represent for some purpose' (Gruber, 1993, p. 1)....
TL;DR: A new method for automatic indexing and retrieval to take advantage of implicit higher-order structure in the association of terms with documents (“semantic structure”) in order to improve the detection of relevant documents on the basis of terms found in queries.
Abstract: A new method for automatic indexing and retrieval is described. The approach is to take advantage of implicit higher-order structure in the association of terms with documents (“semantic structure”) in order to improve the detection of relevant documents on the basis of terms found in queries. The particular technique used is singular-value decomposition, in which a large term by document matrix is decomposed into a set of ca. 100 orthogonal factors from which the original matrix can be approximated by linear combination. Documents are represented by ca. 100 item vectors of factor weights. Queries are represented as pseudo-document vectors formed from weighted combinations of terms, and documents with supra-threshold cosine values are returned. initial tests find this completely automatic method for retrieval to be promising.
TL;DR: The Unified Medical Language System is a repository of biomedical vocabularies developed by the US National Library of Medicine and includes tools for customizing the Metathesaurus (MetamorphoSys), for generating lexical variants of concept names (lvg) and for extracting UMLS concepts from text (MetaMap).
Abstract: The Unified Medical Language System (http:// umlsks.nlm.nih.gov) is a repository of biomedical vocabularies developed by the US National Library of Medicine. The UMLS integrates over 2 million names for some 900 000 concepts from more than 60 families of biomedical vocabularies, as well as 12 million relations among these concepts. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank. In addition to data, the UMLS includes tools for customizing the Metathesaurus (MetamorphoSys), for generating lexical variants of concept names (lvg) and for extracting UMLS concepts from text (MetaMap). The UMLS knowledge sources are updated quarterly. All vocabularies are available at no fee for research purposes within an institution, but UMLS users are required to sign a license agreement. The UMLS knowledge sources are distributed on CD-ROM and by FTP.
3,707 citations
"Supporting better treatments for me..." refers background in this paper
...(Bodenreider, 2004)
Additionally, there have been several research efforts focusing on developing frameworks to help health consumers search for information (Puustjarvi and Puustjarvi, 2011; Dong and Hussain, 2011)....
TL;DR: This paper outlines a methodology for developing and evaluating ontologies, first discussing informal techniques, concerning such issues as scoping, handling ambiguity, reaching agreement and producing definitions, and considers, a more formal approach.
Abstract: This paper is intended to serve as a comprehensive introduction to the emerging field concerned with the design and use of ontologies. We observe that disparate backgrounds, languages, tools and techniques are a major barrier to effective communication among people, organisations and/or software understanding (i.e. an “ontology”) in a given subject area, can improve such communication, which in turn, can give rise to greater reuse and sharing, inter-operability, and more reliable software. After motivating their need, we clarify just what ontologies are and what purpose they serve. We outline a methodology for developing and evaluating ontologies, first discussing informal techniques, concerning such issues as scoping, handling ambiguity, reaching agreement and producing definitions. We then consider the benefits and describe, a more formal approach. We re-visit the scoping phase, and discuss the role of formal languages and techniques in the specification, implementation and evalution of ontologies. Finally, we review the state of the art and practice in this emerging field, considering various case studies, software tools for ontology development, key research issues and future prospects.