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The Banana (Musa acuminata) genome and the evolution of monocotyledonous plants : W401

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TLDR
D'Hont et al. as discussed by the authors reported the first monocotyledon high-continuity whole-genome sequence reported outside Poales, which represents an essential bridge for comparative genome analysis in plants.
Abstract
Bananas (Musa spp.), including dessert and cooking types, are giant perennial monocotyledonous herbs of the Zingiberales order, a sister group to the well-studied Poales. We sequenced and assembled the 520 Mb genome of a doubled-haploid of the accession 'Pahang'. This accession belongs to the Musa acuminata species (AA genome) malaccensis subspecies. We detected three rounds of whole-genome duplications in the Musa lineage, independently of those previously described in the Poales lineage and the one we detected in the Arecales lineage. This first monocotyledon high-continuity whole-genome sequence reported outside Poales represents an essential bridge for comparative genome analysis in plants. As such, it sheds new light on the monocotyledon lineage, reveals Poaceae specific features and has led to the discovery of conserved noncoding sequences predating monocotyledon-eudicotyledon divergence. The complete list of authors involved in this work can be found in D'Hont et al. Nature. 2012 Aug 9; 488(7410):213-7 (Resume d'auteur)

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UpSetR: an R package for the visualization of intersecting sets and their properties

TL;DR: UpSetR is an open source R package that employs a scalable matrix‐based visualization to show intersections of sets, their size, and other properties, and is released under the MIT License.
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InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

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UpSet: Visualization of Intersecting Sets.

TL;DR: This paper introduces UpSet, a novel visualization technique for the quantitative analysis of sets, their intersections, and aggregates of intersections, focused on creating task-driven aggregates, communicating the size and properties of aggregates and intersection, and a duality between the visualization of the elements in a dataset and their set membership.
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Evolution of Gene Duplication in Plants.

TL;DR: This review surveys the current knowledge about gene duplication, including gene duplication mechanisms, the potential fates of duplicate genes, models explaining duplicate gene retention, the properties that distinguish duplicate from singleton genes, and the evolutionary impact of gene duplication.
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Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

TL;DR: The genome size of the hot pepper was approximately fourfold larger than that of its close relative tomato, and the genome showed an accumulation of Gypsy and Caulimoviridae family elements.
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