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The branching programme of mouse lung development

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TLDR
This work presents the complete three-dimensional branching pattern and lineage of the mouse bronchial tree, reconstructed from an analysis of hundreds of developmental intermediates, and proposes that each mode of branching is controlled by a genetically encoded subroutine, a series of local patterning and morphogenesis operations, which are themselvescontrolled by a more global master routine.
Abstract
Mammalian lungs are branched networks containing thousands to millions of airways arrayed in intricate patterns that are crucial for respiration. How such trees are generated during development, and how the developmental patterning information is encoded, have long fascinated biologists and mathematicians. However, models have been limited by a lack of information on the normal sequence and pattern of branching events. Here we present the complete three-dimensional branching pattern and lineage of the mouse bronchial tree, reconstructed from an analysis of hundreds of developmental intermediates. The branching process is remarkably stereotyped and elegant: the tree is generated by three geometrically simple local modes of branching used in three different orders throughout the lung. We propose that each mode of branching is controlled by a genetically encoded subroutine, a series of local patterning and morphogenesis operations, which are themselves controlled by a more global master routine. We show that this hierarchical and modular programme is genetically tractable, and it is ideally suited to encoding and evolving the complex networks of the lung and other branched organs.

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Journal ArticleDOI

Preparing for the First Breath: Genetic and Cellular Mechanisms in Lung Development

TL;DR: Many gaps remain in knowledge, the filling of which is essential for understanding respiratory disorders, congenital defects in human neonates, and how the disruption of morphogenetic programs early in lung development can lead to deficiencies that persist throughout life.
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Alveolar progenitor and stem cells in lung development, renewal and cancer

TL;DR: There is a switch after birth, when AT2 cells function as stem cells that contribute to alveolar renewal, repair and cancer, and it is proposed that local signals regulate AT2 stem-cell activity.
Journal ArticleDOI

From cells to organs: building polarized tissue

TL;DR: This work discusses how conserved polarity complexes, signalling networks, transcription factors, membrane-trafficking pathways, mechanisms for forming lumens in tubes and other hollow structures, and transitions between different types of polarity, such as between epithelial and mesenchymal cells, are used in similar and iterative manners to build all tissues.
Journal ArticleDOI

Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling

TL;DR: It is argued that exploiting well-described model systems using both human airway epithelial cells and the pseudostratified epithelium of the genetically tractable mouse trachea will enable crucial discoveries regarding the pathogenesis of airway disease.
References
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Book

The Fractal Geometry of Nature

TL;DR: This book is a blend of erudition, popularization, and exposition, and the illustrations include many superb examples of computer graphics that are works of art in their own right.
Journal ArticleDOI

A general model for the origin of allometric scaling laws in biology

TL;DR: The model provides a complete analysis of scaling relations for mammalian circulatory systems that are in agreement with data and predicts structural and functional properties of vertebrate cardiovascular and respiratory systems, plant vascular systems, insect tracheal tubes, and other distribution networks.
Book

The Algorithmic Beauty of Plants

TL;DR: Graphical modeling using L-systems and turtle interpretation of symbols for plant models and iterated function systems, and Fractal properties of plants.
Book

Shape and Structure, from Engineering to Nature

Adrian Bejan
TL;DR: In this paper, the authors propose a model of the natural form, questioning, and theory of the human body and the structure of a human body in terms of the following: 1. Natural Form, questioning and theory 2. Mechanical structure 3. Thermal structure 4. Heat trees 5. Fluid trees 6. Ducts and rivers 7. Turbulent structure 8. Convective trees 9. Structure in time: rhythm 11. Transportation and economics structure 12. Shapes with constant resistance
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