The Human Genome Browser at UCSC
Citations
45,957 citations
Cites methods from "The Human Genome Browser at UCSC"
...We combine the UCSC binning scheme (Kent et al., 2002) and simple linear indexing to achieve fast random retrieval of alignments overlapping a specified chromosomal region....
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20,557 citations
18,858 citations
Cites methods from "The Human Genome Browser at UCSC"
...Results: This article introduces a new software suite for the comparison, manipulation and annotation of genomic features in Browser Extensible Data (BED) and General Feature Format (GFF) format....
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14,524 citations
14,103 citations
References
22,269 citations
8,326 citations
"The Human Genome Browser at UCSC" refers methods in this paper
...In all cases, the alignment is done with the BLAT program (Kent 2002) using the default nucleotide alignment parameters....
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...In all cases, the alignment is done with the BLAT program ( Kent 2002 ) using the default nucleotide alignment parameters....
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...The browser is highly integrated with the BLAT sequence search tool ( Kent 2002 )....
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...The browser is highly integrated with the BLAT sequence search tool (Kent 2002)....
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7,688 citations
6,577 citations
"The Human Genome Browser at UCSC" refers methods in this paper
...The human genome was run through RepeatMasker (Smit 1999; Jurka 2000) and Tandem Repeat Finder ( Benson 1999 ) before the alignments....
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...The human genome was run through RepeatMasker (Smit 1999; Jurka 2000) and Tandem Repeat Finder (Benson 1999) before the alignments....
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3,709 citations
"The Human Genome Browser at UCSC" refers methods in this paper
...Ensembl ran theGenscan program ( Burge and Karlin 1997 ) to find genes in finished and draft clones....
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...Ensembl ran the Genscan program (Burge and Karlin 1997) to find genes in finished and draft clones....
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