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Journal ArticleDOI

The immersed boundary method

01 Jan 2002-Acta Numerica (Cambridge University Press)-Vol. 11, pp 479-517
TL;DR: This paper is concerned with the mathematical structure of the immersed boundary (IB) method, which is intended for the computer simulation of fluid–structure interaction, especially in biological fluid dynamics.
Abstract: This paper is concerned with the mathematical structure of the immersed boundary (IB) method, which is intended for the computer simulation of fluid–structure interaction, especially in biological fluid dynamics. The IB formulation of such problems, derived here from the principle of least action, involves both Eulerian and Lagrangian variables, linked by the Dirac delta function. Spatial discretization of the IB equations is based on a fixed Cartesian mesh for the Eulerian variables, and a moving curvilinear mesh for the Lagrangian variables. The two types of variables are linked by interaction equations that involve a smoothed approximation to the Dirac delta function. Eulerian/Lagrangian identities govern the transfer of data from one mesh to the other. Temporal discretization is by a second-order Runge–Kutta method. Current and future research directions are pointed out, and applications of the IB method are briefly discussed. Introduction The immersed boundary (IB) method was introduced to study flow patterns around heart valves and has evolved into a generally useful method for problems of fluid–structure interaction. The IB method is both a mathematical formulation and a numerical scheme. The mathematical formulation employs a mixture of Eulerian and Lagrangian variables. These are related by interaction equations in which the Dirac delta function plays a prominent role. In the numerical scheme motivated by the IB formulation, the Eulerian variables are defined on a fixed Cartesian mesh, and the Lagrangian variables are defined on a curvilinear mesh that moves freely through the fixed Cartesian mesh without being constrained to adapt to it in any way at all.

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Citations
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Journal ArticleDOI
TL;DR: This work reviews many significant developments over the past decade of the lattice-Boltzmann method and discusses higherorder boundary conditions and the simulation of microchannel flow with finite Knudsen number.
Abstract: With its roots in kinetic theory and the cellular automaton concept, the lattice-Boltzmann (LB) equation can be used to obtain continuum flow quantities from simple and local update rules based on particle interactions. The simplicity of formulation and its versatility explain the rapid expansion of the LB method to applications in complex and multiscale flows. We review many significant developments over the past decade with specific examples. Some of the most active developments include the entropic LB method and the application of the LB method to turbulent flow, multiphase flow, and deformable particle and fiber suspensions. Hybrid methods based on the combination of the Eulerian lattice with a Lagrangian grid system for the simulation of moving deformable boundaries show promise for more efficient applications to a broader class of problems. We also discuss higherorder boundary conditions and the simulation of microchannel flow with finite Knudsen number. Additionally, the remarkable scalability of the LB method for parallel processing is shown with examples. Teraflop simulations with the LB method are routine, and there is no doubt that this method will be one of the first candidates for petaflop computational fluid dynamics in the near future.

1,585 citations

Journal ArticleDOI
TL;DR: In this article, an improved method for computing incompressible viscous flow around suspended rigid particles using a fixed and uniform computational grid is presented. But the main idea is to incorporate Peskin's regularized delta function approach into a direct formulation of the fluid-solid interaction force in order to allow for a smooth transfer between Eulerian and Lagrangian representations.

1,399 citations


Cites background or methods from "The immersed boundary method"

  • ...This concept is related to the Lagrangian marker points used in the framework of the IB method [23]....

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  • ...The regularized delta function of Peskin [23] is used for the association between arbitrary Lagrangian and discrete Eulerian positions....

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  • ...3 Transfer of quantities between Lagrangian and Eulerian locations Here we use the class of regularized delta functions introduced by Peskin [10, 23] as kernels in the transfer steps between Lagrangian and Eulerian locations....

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  • ...One of the precursors, the immersed boundary (IB) method of Peskin, was originally conceived for flows around flexible membranes, specifically the flow in the human heart [10]....

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  • ...Using the IB method, Lai and Peskin [12] obtained a similar overprediction of the mean drag in this case and attributed the discrepancy to the confinement effect due to the finite distance of the lateral boundaries which are treated as slip walls....

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Journal ArticleDOI
TL;DR: In this paper, a new computational method, the immersed boundary-lattice Boltzmann method, is presented, which combines the most desirable features of the lattice Boltzman and immersed boundary methods and uses a regular Eulerian grid for the flow domain and a Lagrangian grid to follow particles contained in the flow field.

804 citations

PatentDOI
27 Apr 2020-Science
TL;DR: The Grigoryan et al. show that natural and synthetic food dyes can be used as photoabsorbers that enable stereolithographic production of hydrogels containing intricate and functional vascular architectures, and establish intravascular and multivascular design freedoms with photopolymerizablehydrogels.
Abstract: A device made from a hydrogel matrix is provided. The hydrogel matrix includes a photoabsorber with a void architecture in the matrix, having a first vessel architecture and a second vessel architecture that are each tubular and branching, wherein the first and second vessel architectures are fluidically independent from each other. A pre-polymerization solution for forming the device, and methods of fabricating such devices are described. A method of fabricating a 3D hydrogel construct is provided. The method includes using a computer-implemented process to create a 3D model of the construct based on a tessellation of polyhedra having a number of faces connected by edges and vertices, generate a first vascular component of the model, generate a second vascular component of the model, and combine the first and second vascular components of the model.

712 citations

Journal ArticleDOI
TL;DR: A new formulation of the immersed boundary method with a structure algebraically identical to the traditional fractional step method is presented for incompressible flow over bodies with prescribed surface motion, achieving second-order temporal accuracy and better than first-order spatial accuracy in L"2-norms for one- and two-dimensional test problems.

626 citations


Cites background from "The immersed boundary method"

  • ...[33,3] may be consulted for a variety of delta functions....

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  • ...[33,27] should be consulted for additional IBMs....

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  • ...Immersed boundary methods (IBMs) have gained popularity for their ability to handle moving or deforming bodies with complex surface geometry [33,27]....

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References
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Journal ArticleDOI
TL;DR: In this paper, a new technique is described for the numerical investigation of the time-dependent flow of an incompressible fluid, the boundary of which is partially confined and partially free The full Navier-Stokes equations are written in finite-difference form, and the solution is accomplished by finite-time step advancement.
Abstract: A new technique is described for the numerical investigation of the time‐dependent flow of an incompressible fluid, the boundary of which is partially confined and partially free The full Navier‐Stokes equations are written in finite‐difference form, and the solution is accomplished by finite‐time‐step advancement The primary dependent variables are the pressure and the velocity components Also used is a set of marker particles which move with the fluid The technique is called the marker and cell method Some examples of the application of this method are presented All non‐linear effects are completely included, and the transient aspects can be computed for as much elapsed time as desired

5,841 citations


"The immersed boundary method" refers methods in this paper

  • ...An example of the use of the 3-point delta function can be found in the work of A. Roma (Roma, Peskin and Berger 1999), who used it in conjunction with the MAC scheme ( Harlow and Welch 1965 )....

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  • ...An example of the use of the 3-point delta function can be found in the work of A. Roma (Roma, Peskin and Berger 1999), who used it in conjunction with the MAC scheme (Harlow and Welch 1965)....

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Journal ArticleDOI
TL;DR: In this paper, a finite-difference method for solving the time-dependent Navier-Stokes equations for an incompressible fluid is introduced, which is equally applicable to problems in two and three space dimensions.
Abstract: A finite-difference method for solving the time-dependent Navier- Stokes equations for an incompressible fluid is introduced. This method uses the primitive variables, i.e. the velocities and the pressure, and is equally applicable to problems in two and three space dimensions. Test problems are solved, and an ap- plication to a three-dimensional convection problem is presented.

4,991 citations


"The immersed boundary method" refers methods in this paper

  • ...From Chorin, I learned fluid mechanics, and also his projection method (Chorin 1968, Chorin 1969) for incompressible flow, upon which foundation the immersed boundary method was built....

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  • ...From Chorin, I learned fluid mechanics, and also his projection method ( Chorin 1968, Chorin 1969) for incompressible flow, upon which foundation the immersed boundary method was built....

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Journal ArticleDOI
TL;DR: In this paper, the authors developed finite difference methods for elliptic equations of the form \[ abla \cdot (\beta (x)) + \kappa (x)u(x) = f(x)) in a region in one or two dimensions.
Abstract: The authors develop finite difference methods for elliptic equations of the form \[ abla \cdot (\beta (x) abla u(x)) + \kappa (x)u(x) = f(x)\] in a region $\Omega $ in one or two space dimension...

1,442 citations


"The immersed boundary method" refers methods in this paper

  • ...As mentioned above, the ‘immersed interface method’ (LeVeque and Li 1994, LeVeque and Li 1997, Li and Lai 2001) avoids this smearing and maintains second-order accuracy by modifying the difference equations near the interface....

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  • ...The ‘immersed interface method’ (LeVeque and Li 1994, LeVeque and Li 1997, Li and Lai 2001) overcomes this difficulty....

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Journal ArticleDOI
TL;DR: In this paper, the Navier-Stokes equations permit the presence of an externally imposed body force that may vary in space and time, and the velocity is used to iteratively determine the desired value.

1,119 citations

Journal ArticleDOI
TL;DR: In this article, a second-order accurate immersed boundary method is presented and tested and applied to simulate the flow past a circular cylinder and study the effect of numerical viscosity on the accuracy of the computation.

883 citations


"The immersed boundary method" refers methods in this paper

  • ...Flow past a cylinder has been studied by the IB method (Lai and Peskin 2000)....

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  • ...The temporal discretization that we currently use (Lai and Peskin 2000, McQueen and Peskin 2001) is a second-order accurate Runge–Kutta method, based primarily on the midpoint rule....

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  • ...The IB method results reported in Lai and Peskin (2000) are in close agreement with experiment over a range of Reynolds numbers (100–200) in which the Strouhal number varies significantly as the Reynolds number is changed....

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