The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Citations
3,634 citations
Cites methods from "The neighbor-joining method: a new ..."
...4b) using the neighbour-joining method (Saitou & Nei 1987)....
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3,500 citations
Cites methods from "The neighbor-joining method: a new ..."
...Given an alignment, Neighbor-Joining and related minimum evolution methods are the fastest and most scalable approaches for inferring phylogenies (Saitou and Nei, 1987; Studier and Keppler, 1988; Desper and Gascuel, 2002)....
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...FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix...
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3,290 citations
Cites methods from "The neighbor-joining method: a new ..."
...A case in point is the application of the Neighbor-Joining (NJ) method in phylogenetic inference [9]....
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3,278 citations
Cites methods from "The neighbor-joining method: a new ..."
...For the phylogenetic inference, users can chose either the NJ [91] or UPGMA [73] method....
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3,212 citations
Cites background from "The neighbor-joining method: a new ..."
...Neighbour-joining (NJ) trees of K2P distances were created to provide a graphic representation of the patterning of divergence between species (Saitou & Nei 1987)....
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References
15,840 citations
Additional excerpts
...Here, 2 represents a group of OTUs including all but 1 and 2, and Dlz and Dzz are the distances between 1 and 2 and 2 and 2, respectively (see Nei 1987, pp. 298-302, for an elementary exposition of this method)....
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10,262 citations
3,734 citations
"The neighbor-joining method: a new ..." refers methods in this paper
...After the nucleotide sequences for eight OTUs were produced, nucleotide differences were counted for all pairs of sequences, and the evolutionary distance (Jukes and Cantor 1969) was computed for each pair of OTUs....
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3,454 citations
"The neighbor-joining method: a new ..." refers methods in this paper
...Our procedure of estimating branch lengths is essentially the same as that of Fitch and Margoliash ( 1967)....
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3,332 citations