The neighbor-joining method: a new method for reconstructing phylogenetic trees.
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Cites methods from "The neighbor-joining method: a new ..."
...MEGA5 automatically infers the evolutionary tree by the NeighborJoining (NJ) algorithm that uses a matrix of pairwise distances estimated under the Jones–Thornton–Taylor (JTT) model for amino acid sequences or the Tamura and Nei (1993) model for nucleotide sequences (Saitou and Nei 1987; Jones et al. 1992; Tamura and Nei 1993; Tamura et al. 2004)....
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...…or generated automatically by applying NJ and BIONJ algorithms to a matrix of pairwise distances estimated using a maximum composite likelihood approach for nucleotide sequences and a JTT model for amino acid sequences (Saitou and Nei 1987; Jones et al. 1992; Gascuel 1997; Tamura et al. 2004)....
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...…the NeighborJoining (NJ) algorithm that uses a matrix of pairwise distances estimated under the Jones–Thornton–Taylor (JTT) model for amino acid sequences or the Tamura and Nei (1993) model for nucleotide sequences (Saitou and Nei 1987; Jones et al. 1992; Tamura and Nei 1993; Tamura et al. 2004)....
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...The initial tree for the ML search can be supplied by the user (Newick format) or generated automatically by applying NJ and BIONJ algorithms to a matrix of pairwise distances estimated using a maximum composite likelihood approach for nucleotide sequences and a JTT model for amino acid sequences (Saitou and Nei 1987; Jones et al. 1992; Gascuel 1997; Tamura et al. 2004)....
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37,524 citations
Cites methods from "The neighbor-joining method: a new ..."
...Distance matrices are clustered using UPGMA (11), which we ®nd to give slightly improved results over neighbor-joining (12), despite the expectation that neighbor-joining will give a more reliable estimate of the evolutionary tree....
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33,048 citations
Cites methods from "The neighbor-joining method: a new ..."
...For the Neighbor-Joining (NJ) method (Saitou and Nei 1987), memory usage increased at a polynomial rate as the number of sequences was increased....
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29,021 citations
Cites methods from "The neighbor-joining method: a new ..."
...the Neighbor-Joining method ( Saitou and Nei 1987 ), as the use of the MCL distances leads to a...
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...…from https://academic.oup.com/mbe/article-abstract/24/8/1596/1105236 by Zhejiang University user on 26 June 2018 Neighbor-Joining method (Saitou and Nei 1987), as the use of the MCL distances leads to a much higher accuracy (Tamura, Nei, and Kumar 2004)....
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References
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"The neighbor-joining method: a new ..." refers methods in this paper
...Some examples are the distance Wagner (DW) method (Farris 1972), modified Farris (MF) methods (Tateno et al. 1982; Faith 1985), and the neighborliness methods of Sattath and Tversky (ST method; 1977) and Fitch ( 198 1)....
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