The Protein Data Bank
Citations
35,698 citations
27,505 citations
Additional excerpts
...…(Morris et al., 2002; Old®eld & Hubbard, 1994; Old®eld, 2001), a likelihood distribution for the pseudo-torsion angle C (n)ÐC (n + 1)ÐC (n + 2)Ð C (n + 3) versus the angle C (n + 1)ÐC (n + 2)ÐC (n + 3) has been generated from high-resolution structures in the PDB (Berman et al., 2000) (Fig....
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18,531 citations
Cites background from "The Protein Data Bank"
...This task can be complicated for several reasons: the presence of novel ligands or nonstandard residues in the PDB-format (Berman et al., 2000) coordinate file, data collected from twinned crystals, various reflection datafile formats, different representation of atomic displacement parameters in the presence of TLS (Schomaker & Trueblood, 1968), experimental data type (X-ray and/or neutron), files with multiple models and various formatting issues....
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...This task can be complicated for several reasons: the presence of novel ligands or nonstandard residues in the PDB-format (Berman et al., 2000) coordinate file, data collected from twinned crystals, various reflection datafile formats, different representation of atomic displacement parameters in…...
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14,075 citations
12,206 citations
Cites methods from "The Protein Data Bank"
...A typical MolProbity session starts with the user uploading a coordinate file of their own or fetching one from the PDB or NDB databases (Berman et al., 1992, 2000) in new or old PDB format or in mmCIF format....
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References
88,255 citations
22,829 citations
14,077 citations
13,971 citations
12,432 citations