The Sequence Alignment/Map format and SAMtools
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...…is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. functionality from PySam…...
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...We combine the UCSC binning scheme (Kent et al., 2002) and simple linear indexing to achieve fast random retrieval of alignments overlapping a specified chromosomal region....
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"The Sequence Alignment/Map format a..." refers background or methods in this paper
...With the advent of novel sequencing technologies such as Illumina/Solexa, AB/SOLiD and Roche/454 (Mardis, 2008), a variety of new alignment tools (Langmead et al., 2009; Li et al., 2008) have been designed to realize efficient read mapping against large reference sequences, including the human genome....
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...[14:24 14/7/2009 Bioinformatics-btp352.tex] Page: 2078 2078–2079 Summary: The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms....
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...With the advent of novel sequencing technologies such as Illumina/Solexa, AB/SOLiD and Roche/454 (Mardis, 2008), a variety of new alignment tools (Langmead et al., 2009; Li et al., 2008) have been designed to realize efficient read mapping against large reference sequences, including the human…...
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