The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
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...…and Sippl, 2007) http://www.came.sbg.ac.at QMEAN local (Benkert et al., 2011) http://www.openstructure.org/download/ SwissModel Workspace (Arnold et al., 2006) http://swissmodel.expasy.org/workspace/index .php?func=tools_structureassessment1 VERIFY3D (Luthy et al., 1992)…...
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...ANOLEA (Melo and Feytmans, 1998) http://melolab.org/anolea/index.html ERRAT (Colovos and Yeates, 1993) http://nihserver.mbi.ucla.edu/ERRAT/ ModEval http://salilab.org/modeval/ ProQ2 (Ray et al., 2012) http://proq2.theophys.kth.se/ PROCHECK (Laskowski et al., 1993) http://www.ebi.ac.uk/thorntonsrv/software/PROCHECK/ Prosa2003 (Sippl, 1993; Wiederstein and Sippl, 2007) http://www.came.sbg.ac.at QMEAN local (Benkert et al., 2011) http://www.openstructure.org/download/ SwissModel Workspace (Arnold et al., 2006) http://swissmodel.expasy.org/workspace/index .php?func=tools_structureassessment1 VERIFY3D (Luthy et al., 1992) http://www.doembi.ucla.edu/Services/Verify_3D/ WHATCHECK (Hooft et al., 1996) http://www.cmbi.kun.nl/gv/whatcheck/...
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3,006 citations
References
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"The SWISS-MODEL workspace: a web-ba..." refers methods in this paper
...As a template, the 1.6-Å resolution crystal structure of the SQD1 enzyme with Protein DataBank (Berman et al. 2000) identification code 1QRR was used (Mulichak et al. 1999)....
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22,829 citations
"The SWISS-MODEL workspace: a web-ba..." refers background in this paper
..., 1996) and Procheck (Laskowski et al., 1993) reports are generated to enable the user to estimate the quality of protein models and template structures....
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14,077 citations
"The SWISS-MODEL workspace: a web-ba..." refers methods in this paper
...To facilitate the description of template and model structures, DSSP (Kabsch and Sander, 1983) and Promotif (Hutchinson and Thornton, 1996) can be invoked to classify structural features....
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14,075 citations