TIMER: A Web Server for Comprehensive Analysis of Tumor-Infiltrating Immune Cells
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1,992 citations
Cites methods from "TIMER: A Web Server for Comprehensi..."
...This motivated us to improve TIMER, a web server that we developed previously (14)....
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...The original TIMER web server included only one immune infiltration estimation algorithm (14)....
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1,680 citations
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References
10,602 citations
"TIMER: A Web Server for Comprehensi..." refers background in this paper
...Recent advances in immunotherapy, especially checkpoint blockade, have resulted in clinical success in treating late-stage cancers (1)....
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6,967 citations
"TIMER: A Web Server for Comprehensi..." refers methods in this paper
...One influential deconvolution method, CIBERSORT, utilizes microarray data with a predefined immune signature matrix to estimate the fraction of 22 tumor-infiltrating immune cells (TIIC) within a given sample (5)....
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3,759 citations
"TIMER: A Web Server for Comprehensi..." refers background in this paper
...Survival module Many studies have reported a prominent impact of TIICs on clinical outcome of cancer patients (11)....
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2,600 citations
"TIMER: A Web Server for Comprehensi..." refers methods in this paper
...One seminal study measures effector cell cytolytic activity using the transcript levels of two genes, GZMA and PRF1, to elucidate possible mechanisms of immune evasion (8)....
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2,392 citations
"TIMER: A Web Server for Comprehensi..." refers background in this paper
...0 (14), including deep deletion, shallow deletion, diploid/normal, lowlevel gain, andhigh amplification....
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