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Open AccessJournal ArticleDOI

Transposable elements and the evolution of regulatory networks

Cédric Feschotte
- 01 May 2008 - 
- Vol. 9, Iss: 5, pp 397-405
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TLDR
Earlier models are revisited and expanded and it is proposed that genomic repeats, and in particular transposable elements, have been a rich source of material for the assembly and tinkering of eukaryotic gene regulatory systems.
Abstract
The control and coordination of eukaryotic gene expression rely on transcriptional and post-transcriptional regulatory networks. Although progress has been made in mapping the components and deciphering the function of these networks, the mechanisms by which such intricate circuits originate and evolve remain poorly understood. Here I revisit and expand earlier models and propose that genomic repeats, and in particular transposable elements, have been a rich source of material for the assembly and tinkering of eukaryotic gene regulatory systems.

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Citations
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Journal ArticleDOI

The impact of retrotransposons on human genome evolution.

TL;DR: This Review focuses on non-long terminal repeat (LTR) retrotransposons, and discusses the many ways that they affect the human genome: from generating insertion mutations and genomic instability to altering gene expression and contributing to genetic innovation.
Journal ArticleDOI

The rise of regulatory RNA.

TL;DR: A central role for RNA in human evolution and ontogeny is suggested and the emergence of the previously unsuspected world of regulatory RNA from a historical perspective is reviewed.
Journal ArticleDOI

Regulatory activities of transposable elements: from conflicts to benefits.

TL;DR: Recent findings supporting the long-standing hypothesis that the waves of TE invasions endured by organisms for eons have catalysed the evolution of gene-regulatory networks are reviewed.
Journal ArticleDOI

Embryonic stem cell potency fluctuates with endogenous retrovirus activity

TL;DR: A rare transient cell population within mouse ES and induced pluripotent stem (iPS) cell cultures that expresses high levels of transcripts found in two-cell (2C) embryos in which the blastomeres are totipotent is identified.
Journal ArticleDOI

5-hmC–mediated epigenetic dynamics during postnatal neurodevelopment and aging

TL;DR: The mapped 5-hmC genome-wide in mouse hippocampus and cerebellum at three different ages allowed us to assess its stability and dynamic regulation during postnatal neurodevelopment through adulthood, and found developmentally programmed acquisition of 5-HMC in neuronal cells.
References
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Journal ArticleDOI

Initial sequencing and analysis of the human genome.

Eric S. Lander, +248 more
- 15 Feb 2001 - 
TL;DR: The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.
Journal ArticleDOI

MicroRNAs: small RNAs with a big role in gene regulation

TL;DR: Two founding members of the microRNA family were originally identified in Caenorhabditis elegans as genes that were required for the timed regulation of developmental events and indicate the existence of multiple RISCs that carry out related but specific biological functions.
Journal ArticleDOI

Exaptation; a missing term in the science of form

TL;DR: This work presents several examples of exaptation, indicating where a failure to concep- tualize such an idea limited the range of hypotheses previously available, and proposes a terminological solution to the problem of preadaptation.
Journal ArticleDOI

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

TL;DR: A comprehensive search for conserved elements in vertebrate genomes is conducted, using genome-wide multiple alignments of five vertebrate species (human, mouse, rat, chicken, and Fugu rubripes), using a two-state phylogenetic hidden Markov model (phylo-HMM).
Journal ArticleDOI

Repeated Sequences in DNA

TL;DR: Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms and used in medicine, science, and engineering.
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