TreeView : an application to display phylogenetic trees on personal computers
Citations
25,931 citations
Cites methods from "TreeView : an application to displa..."
...Consensus trees are written with both branch lengths and posterior clade probabilities, for easy graphical representation using software such as TreeView ( Page, 1996 )....
[...]
...Consensus trees are written with both branch lengths and posterior clade probabilities, for easy graphical representation using software such as TreeView (Page, 1996)....
[...]
10,773 citations
Cites background or methods from "TreeView : an application to displa..."
...See Goldman, Anderson, and Rodrigo (2000) for a critical review of those methods....
[...]
...The trees with branch lengths calculated from PAML programs should be directly readable by TreeView (Page 1996)....
[...]
...Goldman N, Anderson JP, Rodrigo AG....
[...]
...See pages 250-251 in Yang (2006). (Strictly speaking the above description is accurate if fossil calibration is available for the root only but not for any other nodes....
[...]
...I have found it convenient to create the tree file with labels and read the tree using Rod page’s (1996) TreeView to check that the tree and labels are right....
[...]
4,233 citations
2,856 citations
2,692 citations
Cites methods from "TreeView : an application to displa..."
...There aremany software packages and Web tools that are designed for displaying phylogenetic trees, such as TREEVIEW (Page 1996), FIGTREE (Rambaut 2014), TREEDYN (Chevenet et al. 2006), ITOL (Letunic & Bork 2011), EVOLVIEW (Zhang et al. 2012) and DENDROSCOPE (Huson & Scornavacca 2012)....
[...]
References
63,427 citations
"TreeView : an application to displa..." refers methods in this paper
...TREEVIEW can read tree files produced by the CLUSTAL W (Thompson et al., 1994), COMPONENT (Page, 1993), fastDNAml (Olsen et al., 1994), Hennig86 (Farris, 1988), MacClade (Maddison and Maddison, 1992), PAUP (Swofford, 1993), PHYLIP (Felsenstein, 1993), the Ribosomal Database Project (Maidak et al.,…...
[...]
...TREEVIEW is a simple, easy to use phylogenetic tree viewing utility that runs under both MacOS (on Apple Macintosh computers) and under Microsoft Windows on Intel based computers, the two commonest personal computers used by biologists....
[...]
5,175 citations
1,660 citations
"TreeView : an application to displa..." refers background or methods in this paper
...TREEVIEW can read tree files produced by the CLUSTAL W (Thompson et al., 1994), COMPONENT (Page, 1993), fastDNAml (Olsen et al., 1994), Hennig86 (Farris, 1988), MacClade (Maddison and Maddison, 1992), PAUP (Swofford, 1993), PHYLIP (Felsenstein, 1993), the Ribosomal Database Project (Maidak et al., 1994), among others....
[...]
..., 1994), Hennig86 (Farris, 1988), MacClade (Maddison and Maddison, 1992), PAUP (Swofford, 1993), PHYLIP (Felsenstein, 1993), the Ribosomal Database Project (Maidak et al., 1994), among others....
[...]
...…files produced by the CLUSTAL W (Thompson et al., 1994), COMPONENT (Page, 1993), fastDNAml (Olsen et al., 1994), Hennig86 (Farris, 1988), MacClade (Maddison and Maddison, 1992), PAUP (Swofford, 1993), PHYLIP (Felsenstein, 1993), the Ribosomal Database Project (Maidak et al., 1994), among others....
[...]
1,117 citations
"TreeView : an application to displa..." refers methods in this paper
...Some phylogeny programs, such as PAUP (Swofford, 1993) and MacClade (Maddison and Maddison, 1992) already provide excellent tree drawing and printing facilities, however at present these programs are restricted to Apple Macintosh computers....
[...]
...TREEVIEW can read tree files produced by the CLUSTAL W (Thompson et al., 1994), COMPONENT (Page, 1993), fastDNAml (Olsen et al., 1994), Hennig86 (Farris, 1988), MacClade (Maddison and Maddison, 1992), PAUP (Swofford, 1993), PHYLIP (Felsenstein, 1993), the Ribosomal Database Project (Maidak et al.,…...
[...]
...TREEVIEW is a simple, easy to use phylogenetic tree viewing utility that runs under both MacOS (on Apple Macintosh computers) and under Microsoft Windows on Intel based computers, the two commonest personal computers used by biologists....
[...]