tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
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Cites methods from "tRNAscan-SE: a program for improved..."
...For the tRNA genes we use tRNAscan-SE [18] and to identify the rRNA encoding genes we use a tool " search_for_rnas" developed by Niels Larsen (available from the author)....
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Cites methods from "tRNAscan-SE: a program for improved..."
...Another is based on structure-sensitive Stochastic Context Free Grammars (SCFG) (22) which form the basis of the tRNA prediction program tRNAscan-SE (23) and of Infernal (24), which is used when creating RFAM....
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...Archaea (n1⁄4 27) 5S 56 (24) 43 (21) 1 (1) 12 (8) 47 (23) 4 (3) 16S 47 (25) 45 (25) 2 (2) 0 (0) 47 (27) 2 (2) 23S 47 (25) 44 (24) 2 (2) 1 (1) 46 (26) 2 (2) Bacteria (n1⁄4 321) 5S 1205 (285) 1166 (285) 30 (16) 9 (5) 1339 (320) 173 (69)...
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References
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