Ultracompact biochemical sensor built with two-dimensional photonic crystal microcavity.
TL;DR: By measuring the resonant wavelength of a two-dimensional photonic crystal microcavity, a time-resolved sensing capability is demonstrated that can detect the change in refractive index of 0.002.
Abstract: We report an experimental demonstration of an ultracompact biochemical sensor based on a two-dimensional photonic crystal microcavity. The microcavity, fabricated on a silicon-on-insulator substrate, is designed to have a resonant wavelength (λ) near 1.5 µm. The transmission spectrum of the sensor is measured with different ambient refractive indices ranging from n=1.0 to n=1.5. From observation of the shift in resonant wavelength, a change in ambient refractive index of Δn=0.002 is readily apparent. The correspondence between absolute refractive index and resonant wavelength agrees with numerical calculation to within 4% accuracy. The evaporation of water in a 5% glycerol mixture is also used to demonstrate the capability for in situ time-resolved sensing.
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TL;DR: This article reviews the recent progress in optical biosensors that use the label-free detection protocol, in which biomolecules are unlabeled or unmodified, and are detected in their natural forms, and focuses on the optical biosENSors that utilize the refractive index change as the sensing transduction signal.
2,060 citations
TL;DR: Some of the exciting developments so far in miniaturized optofluidic platforms bring fluid and light together and exploit their microscale interaction for a large variety of applications are overviewed.
Abstract: The realization of miniaturized optofluidic platforms offers potential for achieving more functional and more compact devices. Such integrated systems bring fluid and light together and exploit their microscale interaction for a large variety of applications. The high sensitivity of compact microphotonic devices can generate effective microfluidic sensors, with integration capabilities. By turning the technology around, the exploitation of fluid properties holds the promise of highly flexible, tunable or reconfigurable microphotonic devices. We overview some of the exciting developments so far.
946 citations
TL;DR: A rigorous definition for the detection limit of resonant RI sensors is set forth that accounts for all parameters that affect the detection performance and will lead to design strategies for performance improvement of RI sensors.
Abstract: Refractive index (RI) sensors based on optical resonance techniques are receiving a high degree of attention because of the need to develop simple, low-cost, high-throughput detection technologies for a number of applications. While the sensing mechanism of most of the reported RI sensors is similar, the construction is quite different from technique to technique. It is desirable to have a uniform mechanism for comparing the various RI sensing techniques, but to date there exists a degree of variation as to how the sensing performance is quantified. Here we set forth a rigorous definition for the detection limit of resonant RI sensors that accounts for all parameters that affect the detection performance. Our work will enable a standard approach for quantifying and comparing the performance of optical resonance-based RI sensors. Additionally, it will lead to design strategies for performance improvement of RI sensors.
942 citations
TL;DR: The mechanisms by which optofluidics enhances bio/chemical analysis capabilities, including sensing and the precise control of biological micro/nanoparticles, are emphasized.
Abstract: Optofluidics - the synergistic integration of photonics and microfluidics - has recently emerged as a new analytical field that provides a number of unique characteristics for enhanced sensing performance and simplification of microsystems. In this review, we describe various optofluidic architectures developed in the past five years, emphasize the mechanisms by which optofluidics enhances bio/chemical analysis capabilities, including sensing and the precise control of biological micro/nanoparticles, and envision new research directions to which optofluidics leads.
797 citations
TL;DR: A platform for real-time binding assays on sensor arrays based on silicon ring resonators is presented in this article, where an array of 32 sensors is interrogated simultaneously and 24 simultaneous binding curves are produced.
Abstract: A platform for performing rapid, real-time binding assays on sensor arrays based on silicon ring resonators is presented in this paper. An array of 32 sensors is interrogated simultaneously. Using eight sensors as controls, 24 simultaneous binding curves are produced. The bulk refractive index sensitivity of the system was demonstrated down to 7.6 × 10-7 and sensor-to-sensor variability is 3.9%. Using an 8-min incubation, real-time binding was observed over 8-logs of concentration down to 60 fM using immobilized biotin to capture streptavidin diluted in bovine serum albumin solution. Multiplexing in complex media is demonstrated with two DNA oligonucleotide probes. Time to result and repeatability are demonstrated to be adequate for clinical applications.
553 citations
References
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01 Jan 1973TL;DR: CRC handbook of chemistry and physics, CRC Handbook of Chemistry and Physics, CRC handbook as discussed by the authors, CRC Handbook for Chemistry and Physiology, CRC Handbook for Physics,
Abstract: CRC handbook of chemistry and physics , CRC handbook of chemistry and physics , کتابخانه مرکزی دانشگاه علوم پزشکی تهران
52,268 citations
TL;DR: A fully-vectorial, three-dimensional algorithm to compute the definite-frequency eigenstates of Maxwell's equations in arbitrary periodic dielectric structures, including systems with anisotropy or magnetic materials, using preconditioned block-iterative eigensolvers in a planewave basis is described.
Abstract: We describe a fully-vectorial, three-dimensional algorithm to compute the definite-frequency eigenstates of Maxwell's equations in arbitrary periodic dielectric structures, including systems with anisotropy (birefringence) or magnetic materials, using preconditioned block-iterative eigensolvers in a planewave basis. Favorable scaling with the system size and the number of computed bands is exhibited. We propose a new effective dielectric tensor for anisotropic structures, and demonstrate that O Delta x;2 convergence can be achieved even in systems with sharp material discontinuities. We show how it is possible to solve for interior eigenvalues, such as localized defect modes, without computing the many underlying eigenstates. Preconditioned conjugate-gradient Rayleigh-quotient minimization is compared with the Davidson method for eigensolution, and a number of iteration variants and preconditioners are characterized. Our implementation is freely available on the Web.
2,861 citations
TL;DR: A biosensor has been developed based on induced wavelength shifts in the Fabry-Perot fringes in the visible-light reflection spectrum of appropriately derivatized thin films of porous silicon semiconductors based on Binding of molecules induced changes in the refractive index of the porous silicon.
Abstract: A biosensor has been developed based on induced wavelength shifts in the Fabry-Perot fringes in the visible-light reflection spectrum of appropriately derivatized thin films of porous silicon semiconductors. Binding of molecules induced changes in the refractive index of the porous silicon. The validity and sensitivity of the system are demonstrated for small organic molecules (biotin and digoxigenin), 16-nucleotide DNA oligomers, and proteins (streptavidin and antibodies) at pico- and femtomolar analyte concentrations. The sensor is also highly effective for detecting single and multilayered molecular assemblies.
1,392 citations
TL;DR: In this article, a systematic analysis of waveguides in photonic-crystal slabs is presented, and the considerations that must be applied to achieve single-mode guided bands in these systems are discussed.
Abstract: Linear waveguides in photonic-crystal slabs, two-dimensionally periodic dielectric structures of finite height, are fundamentally different from waveguides in two-dimensional photonic crystals. The most important distinctions arise from the fact that photonic-crystal slab waveguides must be index-confined in the vertical direction ~while a band gap confines them horizontally!. We present a systematic analysis of different families of waveguides in photonic-crystal slabs, and illustrate the considerations that must be applied to achieve single-mode guided bands in these systems. In this way, the unusual features of photonic-crystal waveguides can be realized in three dimensions without the fabrication complexity required by photonic crystals with complete three-dimensional band gaps.
618 citations
TL;DR: In this paper, the surface plasmon resonance angle shifts are calculated as a function of the amount of organic material in the interaction matrix and the influence of physical parameters, such as matrix thickness and wavelength of the light, on the expected performance is considered.
Abstract: Surface plasmon resonance is one of the surface-oriented biosensing techniques that can be used to monitor biomolecular interactions. It is utilized in instrumentation for real-time biospecific interaction analysis capable of determining not only the concentrations of biomolecules but also kinetic constants, binding specificity, etc. In this contribution biosensing with surface plasmon resonance is reviewed. Special attention is given to an extended interaction matrix on the sensing surface, which enables the covalent binding of, e.g., antigens or antibodies. The surface plasmon resonance angle shifts are calculated as a function of the amount of organic material in the matrix. The influence of physical parameters, such as matrix thickness and wavelength of the light, on the expected performance is considered. Finally, a few illustrative experimental results obtained with a recently introduced commercial instrument are given.
520 citations