Book ChapterDOI
Updates on Genomic Resources in Chickpea for Crop Improvement.
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TLDR
Overall, a consolidated overview of available genomic resources of chickpea that may help in fulfilling the promises for improvement of this important crop is provided.Abstract:
In recent years, rapid advancement has been done in generation of genomic resources for the important legume crop chickpea. Here, we provide an update on important advancements made on availability of genomic resources for this crop. The availability of reference genome and transcriptome sequences, and resequencing of several accessions have enabled the discovery of gene space and molecular markers in chickpea. These resources have helped in elucidating evolutionary relationship and identification of quantitative trait loci for important agronomic traits. Gene expression in different tissues/organs during development and under abiotic/biotic stresses has been interrogated. In addition, single-base resolution DNA methylation patterns in different organs have been analyzed to understand gene regulation. Overall, we provide a consolidated overview of available genomic resources of chickpea that may help in fulfilling the promises for improvement of this important crop.read more
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Journal ArticleDOI
Draft genome sequence of chickpea ( Cicer arietinum ) provides a resource for trait improvement
Rajeev K. Varshney,Rajeev K. Varshney,Chi Song,Rachit K. Saxena,Sarwar Azam,Sheng Yu,Andrew G. Sharpe,Steven B. Cannon,Jong-Min Baek,Benjamin D. Rosen,Bunyamin Tar’an,Teresa Millán,Xudong Zhang,Larissa Ramsay,Aiko Iwata,Ying Wang,William Nelson,Andrew Farmer,Pooran M. Gaur,Carol Soderlund,R. Varma Penmetsa,Chunyan Xu,Arvind K. Bharti,Weiming He,Peter Winter,Shancen Zhao,James K. Hane,Noelia Carrasquilla-Garcia,Janet A. Condie,Hari D. Upadhyaya,Ming-Cheng Luo,Mahendar Thudi,C. L. L. Gowda,Narendra Singh,Judith Lichtenzveig,Krishna K. Gali,Josefa Rubio,N. Nadarajan,Jaroslav Dolezel,Kailash C. Bansal,Xun Xu,David Edwards,Gengyun Zhang,Guenter Kahl,Juan Gil,Karam B. Singh,Karam B. Singh,Swapan K. Datta,Scott A. Jackson,Jun Wang,Jun Wang,Douglas R. Cook +51 more
TL;DR: This work reports the ∼738-Mb draft whole genome shotgun sequence of CDC Frontier, a kabuli chickpea variety, which contains an estimated 28,269 genes, and identifies targets of both breeding-associated genetic sweeps and breeding- associated balancing selection.
Journal ArticleDOI
Repeated, Long-Distance Migrations by a Philopatric Predator Targeting Highly Contrasting Ecosystems
James S. E. Lea,Bradley M. Wetherbee,Nuno Queiroz,Neil Burnie,Choy Aming,Laura L. Sousa,Gonzalo Mucientes,Nicolas E. Humphries,Guy M. Harvey,David W. Sims,Mahmood S. Shivji +10 more
TL;DR: The predictable migratory patterns and use of highly divergent ecosystems shown by male tiger sharks appear broadly similar to migrations seen in birds, reptiles and mammals, and highlight opportunities for dynamic spatial management and conservation measures of highly mobile sharks.
Journal ArticleDOI
De Novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification
TL;DR: The chickpea transcripts set generated here provides a resource for gene discovery and development of functional molecular markers and the strategy for de novo assembly of transcriptome data presented here will be helpful in other similar transcriptome studies.
BookDOI
Relevance of Translational Regulation on Plant Growth and Environmental Responses
Purificación Lisón,Alejandro Ferrando,M. Mar Castellano,Johannes Hanson,Dario Leister,Anna Stepanova +5 more
TL;DR: In this article, the authors acknowledge funding by MINECO BIO2015-70483-R to AF, by CAM S2013/ABI-2734 and by ERC GA260468 to MMC, by the Deutsche Forschungsgemeinschaft (DFG, grant TRR175-C05) to DL, by NSF IOS 1444561 and NSFIOS PAPM-EAGER 1650139 to AS, and by Bio4Energy, a Strategic Research Environment appointed by the Swedish government to JH.
Journal ArticleDOI
A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)
Mukesh K. Jain,Gopal Misra,Ravi K. Patel,Pushp Priya,Shalu Jhanwar,Aamir W. Khan,Niraj Shah,Vikas Singh,Rohini Garg,Ganga Jeena,Manju Yadav,Chandra Kant,Priyanka Sharma,Gitanjali Yadav,Sabhyata Bhatia,Akhilesh K. Tyagi,Debasis Chattopadhyay +16 more
TL;DR: The draft sequence of a desi-type chickpea genome is generated using next-generation sequencing platforms, bacterial artificial chromosome end sequences and a genetic map to facilitate genetic enhancement and breeding to develop improved chick pea varieties.
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