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Use of Artificial Intelligence on spatio-temporal data to generate insights during COVID-19 pandemic: A Review

TL;DR: This review presents a comprehensive analysis of the use of AI techniques for spatio-temporal modeling and forecasting and impact modeling on diverse populations as it relates to COVID-19 and lists potential paths of research for which AI based techniques can be used for greater impact in tackling the pandemic.
Abstract: The COVID-19 pandemic, within a short time span, has had a significant impact on every aspect of life in almost every country on the planet. As it evolved from a local epidemic isolated to certain regions of China, to the deadliest pandemic since the influenza outbreak of 1918, scientists all over the world have only amplified their efforts to combat it. In that battle, Artificial Intelligence, or AI, with its wide ranging capabilities and versatility, has played a vital role and thus has had a sizable impact. In this review, we present a comprehensive analysis of the use of AI techniques for spatio-temporal modeling and forecasting and impact modeling on diverse populations as it relates to COVID-19. Furthermore, we catalogue the articles in these areas based on spatio-temporal modeling, intrinsic parameters, extrinsic parameters, dynamic parameters and multivariate inputs (to ascertain the penetration of AI usage in each sub area). The manner in which AI is used and the associated techniques utilized vary for each body of work. Majority of articles use deep learning models, compartment models, stochastic methods and numerous statistical methods. We conclude by listing potential paths of research for which AI based techniques can be used for greater impact in tackling the pandemic.

Summary (4 min read)

1. Introduction

  • The COVID-19 pandemic caused by the novel coronavirus (SARS-CoV-2) exemplifies the vulnerabilities of healthcare systems in the face of unforeseen adversity.
  • In fact, AI systems assist healthcare by performing tasks such as diagnosis, risk assessment, forecasting and surveillance, and health policy and planning.
  • To assist further research in the field, this plethora of articles have been summarized and evaluated in several review articles.
  • These review articles discuss the impact of AI in a general sense i.e. without further categorization into specific topics.

2. Search Strategy and Selection Criteria

  • The literature survey for research papers on existing work on COVID-19 (or pandemics in general) and AI was done using IEEE Xplore, PubMed and Google Scholar for articles published between the time period 2019 and 2020 September.
  • Only articles written in English were considered in this review.
  • The keywords used were [”COVID-19”, ”pandemic” or ”sars-cov-2”] and [”AI” or ”artificial intelligence” or ”machine learning” or ”pattern recognition” or ”prediction” or ”forecasting”] and [”time” or ”location”, ”demography” or ”country” or ”spatio-temporal”].
  • Papers were shortlisted from peer reviewed papers published or in press for journals indexed in Scimago.
  • The texts were examined to pick 49 research papers that matched the scope of this survey.

3. Results

  • The authors literature survey showed that spatio-temporal forecasting was performed either as a time series forecasting problem or as a diversity aware analysis by taking the diversity of populations into account via one/multiple parameter(s).
  • The parameters being used are split into groups based on whether the parameter is inherent to the individuals , the environment or an activity performed by the individuals .
  • The papers are grouped into sections depending on the parameters used to model the affected parties as given in Table 1.

3.1. Spatio-Temporal modeling and forecasting

  • The first cluster of research papers on modeling and forecasting was based on spatial and temporal data alone.
  • 15 Several methods including statistical approaches, machine learning techniques, deep learning models, and time series models have been evaluated in this landscape.
  • The various AI models used and example papers are listed in Fig. 3.

Temporal modeling:

  • Temporal forecasting of COVID-19 infection cases have been evaluated using multiple deep learning models.
  • The Bi-LSTM model and the ConvLSTM models are shown to outperform the other LSTM variants with a Mean Absolute Percentage Error (MAPE) of 3% for day ahead predictions.
  • A novel statistical method has been developed to forecast the spread of COVID-19 globally.
  • This method considers lead-lag effects between different time series using the dynamic time warping technique to analyze non linear relationships among nations.
  • The study concludes that the best parameter to assess the effectiveness of confinement and risk of virus diffusion, is the average number of daily contacts in a population (c).

Spatio-temporal modeling:

  • Researchers have focused on modeling and forecasting the spread of COVID-19 in the spatio-temporal domain to identify not only ‘‘how much” the disease has spread but also ‘‘where” it has spread to.
  • The model takes into account effects of different containment strategies, event and contact restrictions, and different courses the infection may take; which is not possible when dealing with traditional SIR models.
  • A novel approach is taken using Moran’s I test to find regional correlations of COVID-19 cases in China.
  • The spatial association between states are modelled into the following six types:30 1) Sharing of borders 2) Euclidean distance 3) Population 4) Population density 5) Number of doctors and hospitals 6) Number of medical beds.
  • This shows that similar to attributes such as population, underlying spatio-temporal attributes such as inter-state travel can be employed to predict the dynamic spread of the pandemic.

3.2. Modeling the impact on diverse populations

  • The authors review methods that group the population into clusters based on different factors such as occupation, age and other such parameters and analyze COVID-19 spread in those demographics.
  • An overview of what characterizes the population diversity is given in Fig.
  • The importance of this diversity/context awareness of information for handling the pandemic across the globe has been studied.
  • Key challenges in this domain are handling non-uniformly sampled data, incomplete data and figuring out the context without it being readily fed into the models.
  • A summary of this section is given in Table 2.

Medical Conditions

  • A large-scale analysis of the severity of COVID-19 among the population, given the existing statistics of the medical conditions as per the Global Burden of Disease and Population census among the world, is done using statistical analysis coupled with resampling techniques.
  • This study shows the importance of utilizing larger data sources to generate insights during the pandemic.
  • Another study aiming to uncover a similar correlation between pre-existing conditions and COVID-19 mortality was conducted on individual patient data from Wuhan using linear regression and statistical techniques.

Age

  • The authors discuss the research work attempting to uncover the differential impact of COVID-19 on different age groups.
  • The age dependence of COVID-19 ’s impact on children is studied using statistical analysis to thereby generate predictions on the population as a whole by considering data from USA.
  • This work goes on to generate recommendations based on the predictions on how best to prepare for large scale outbreaks.
  • The age stratified CFR rate (case fatality rate -- the ratio of deaths to the number of total cases) is analyzed using basic statistics.
  • Another study performs an in-depth analysis on a larger dataset from around the world (China’s statistics coupled with the rest of the world).

Environmental differences

  • The spread of COVID-19 has been analyzed with regard to environmental factors such as temperature and humidity.
  • One study uses a spatial Seemingly Unrelated Regressions (SUR) to model the COVID-19 spread as an inter-regional contagion process.
  • This doesn’t show the effect of temperature and sunshine on the behavior of the virus, but instead analyzes the people’s behavioral changes based on environmental factors, and thereby the spread of the virus as a result of these changes.
  • 41 Statistical models are used to show the absence of a correlation between the daily temperature and case counts in Spain.
  • 42 Similarly, the performance of ANN based COVID-19 prediction is evaluated to show how absence of weather data does not make a difference.

Social, Economic and Political factors

  • This section discusses the effect of social, economic and political dependencies on the spread and severity of COVID-19.
  • The study recommends healthcare resources to be directed towards areas where low testing and high positive rates are prevalent.
  • 44 Another study explores spatial relationships between socio-demographics and the spread of COVID-19 in three regions of Texas using ordinary least squares (OLS) and geographically weighted regression (GWR).
  • This was evidence of how government policies can affect the spread of COVID-19.
  • The authors analyze the effects of no intervention, cyclic mitigation or suppression measures followed by relaxation period.

Travelling and Population flow

  • In this section the authors focus on travelling and mass population flow between cities during the COVID-19 pandemic prior to the lockdown measures and its impact.
  • Using this, a risk analysis was developed using a Bayesian space-time model to quantify the risk of a person migrating from Wuhan spreading COVID-19 to another population.
  • 52 While the similar scenario in India’s mass migration has been studied,53 AI is yet to be used in the Indian situation.
  • The former was done by a neural network that can absorb time series information of the patient counts and travel statistics, as well as knowledge about the geographical hierarchy of countries and continents.
  • The results show that travel restrictions had a minimal effect unless they were supplemented with other behavioral changes to mitigate the disease spread.

3.2.4. Multivariate inputs

  • The methods in these articles attempt to model the complex relationships between different parameters and uncover correlations that might not be obvious in traditional statistical analysis.
  • The reduction of variables vastly helps real-time forecasting due to simplicity and reduced computational cost.
  • 58 Using the information of COVID-19 spread in the city of Lombardy, an individual level model for COVID-19 transmission that depends on geographical location, age, household structure, and current medical conditions was derived.
  • The work also shows the importance of understanding the inter-dependence of the input variables to develop deep learning models coupled with human intuition.

4. Discussion and potentials of AI for future avenues.

  • Even though medical systems have been computerized in the past decades, the unprecedented nature of COVID-19 has brought forward issues that need to be automated but are still dependent on human intervention.
  • The application of AI for such novel issues poses certain challenges, but overcoming these challenges and exploiting the available methodologies could result in a marked improvement in a variety of fields, especially within the medical domain.
  • Similarly, traditional techniques do not handle Big Data efficiently.
  • It would be interesting to consider these social clustering parameters for this study, as they may have significant correlation with the spread of pandemic.

5. Limitations and Conclusion

  • The rapid development and growing research in AI is amassed as preprints rather than peer reviewed work.
  • Since a major portion of the AI research and development ends up in commercial deployment, they are not made available to the public.
  • Furthermore, India recorded a large number of COVID-19 patients as well and it’s demographics and socio-economics presented a wide range of unique challenges (mass immigration, social inequalities in access to healthcare) in handling the situation.
  • Analysis and reports on this matter that were done in local languages are also not considered in this review.

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Use of Artificial Intelligence on spatio-temporal data to generate insights
during COVID-19 pandemic: A Review
Gihan Jayatilaka
a,1,
, Jameel Hassan
a,1
, Umar Marikkar
a
, Rumali Perera
b
, Suren Sritharan
c
, Harshana
Weligampola
c
, Mevan Ekanayake
d
, Roshan Godaliyadda
a
, Parakrama Ekanayake
a
, Vijitha Herath
a
, G M
Dilshan Godaliyadda
e
, Anuruddhika Rathnayake
f
, Samath D. Dharmaratne
g,h
, Janaka Ekanayake
a,i
a
Department of Electrical and Electronic Engineering, Faculty of Engineering, University of Peradeniya, Peradeniya [20400],
Sri Lanka
b
Department of Statistics and Computer Science, Faculty of Science, University of Peradeniya, Peradeniya [20400], Sri Lanka
c
Faculty of IT and Computing, Sri Lanka Technological Campus, Padukka [10500], Sri Lanka.
d
Office of Research and Innovation Services, Sri Lanka Technological Campus, Padukka [10500], Sri Lanka
e
Researcher, Texas, United States of America
f
Postgraduate Institute of Medicine, University of Colombo, Colombo 07 [07000], Sri Lanka
g
Department of Community Medicine, Faculty of Medicine, University of Peradeniya, Peradeniya [20400], Sri Lanka
h
Department of Heath Metrics Sciences, Institute for Health Metrics and Evaluation, School of Medicine, University of
Washington, United States of America
i
Cardiff School of Engineering, Cardiff University, The Parade, Cardiff CF24 3AA, United Kingdom
Keywords: COVID-19, Artificial Intelligence (AI), Prevention, Control
Abstract
The COVID-19 pandemic, within a short time span, has had a significant impact on every aspect of life
in almost every country on the planet. As it evolved from a local epidemic isolated to certain regions of
China, to the deadliest pandemic since the influenza outbreak of 1918, scientists all over the world have
only amplified their efforts to combat it. In that battle, Artificial Intelligence, or AI, with its wide ranging
capabilities and versatility, has played a vital role and thus has had a sizable impact. In this review, we
present a comprehensive analysis of the use of AI techniques for spatio-temporal modeling and forecasting
and impact modeling on diverse populations as it relates to COVID-19. Furthermore, we catalogue the
articles in these areas based on spatio-temporal modeling, intrinsic parameters, extrinsic parameters, dynamic
parameters and multivariate inputs (to ascertain the penetration of AI usage in each sub area). The manner
in which AI is used and the associated techniques utilized vary for each body of work. Majority of articles
Corresponding author. Email: gihanjayatilaka@eng.pdn.ac.lk
1
Equally contributing authors
2020-11-27
. CC-BY-NC 4.0 International licenseIt is made available under a
is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity.(which was not certified by peer review)preprint
The copyright holder for thisthis version posted November 27, 2020. ; https://doi.org/10.1101/2020.11.22.20232959doi: medRxiv preprint
NOTE: This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice.

use deep learning models, compartment models, stochastic methods and numerous statistical methods. We
conclude by listing potential paths of research for which AI based techniques can be used for greater impact
in tackling the pandemic.
1. Introduction
The COVID-19 pandemic caused by the novel coronavirus (SARS-CoV-2) exemplifies the vulnerabilities of
healthcare systems in the face of unforeseen adversity. After COVID-19 emerged from China in January 2020,
it has spread across the globe and has been responsible for the ongoing pandemic that has claimed hundreds
of thousands of lives around the world (as of October 18, 2020, over 1
·
1 million deaths have been reported
1
).
Artificial Intelligence (AI) is at the forefront in the global response to the prevailing COVID-19 pandemic. In
particular, AI solutions have been developed for infection detection, forecasting, response planning, recovery
planning, risk assessment and patient prioritization, screening and diagnosis, contact tracing, understanding
social interventions, and automated patient care.
2, 3, 4
AI is the notion of mimicking human intellect on a computer, through a collection of operations. The concept
of AI has been with us since the early 1900s and was formalized by Alan Turing in the 1950s. However,
up until the 21st century AI was at a nascent state primarily due to the limited availability of processing
power. The AI revolution as we know came about in the early 2010s when AlexNet,
5
an artificial deep neural
network-based solution, managed to triumph the competition in an image classification challenge. Since then,
AI has permeated almost every scientific discipline including agriculture, education, manufacturing, finance,
transportation, media, and healthcare. Global Health is another key sector which is widely influenced by AI.
In fact, AI systems assist healthcare by performing tasks such as diagnosis, risk assessment, forecasting and
surveillance, and health policy and planning.
6, 7
The furtherance of AI systems has been supplemented by the abundance of data, i.e. Big Data, that is
available to researchers in the era of COVID-19. Hence, hundreds of articles on AI-based systems for different
tasks in the fight against COVID-19 are published constantly (See Fig. 2). To assist further research in the
field, this plethora of articles have been summarized and evaluated in several review articles.
2, 6, 8, 9, 10, 11, 12
These review articles discuss the impact of AI in a general sense i.e. without further categorization into
specific topics. However, with further proliferation of articles, a need for more rigorous review has emerged,
specifically, reviews that catalogue projects based on their specific utilization of AI i.e. cataloguing based
on which tasks are achieved by AI and how. In this paper, we identify and categorize papers into two
primary categories based on the tasks achieved through AI -- spatio-temporal modeling and forecasting
where features like geographical location and time are utilized for modeling and forecasting, and modeling
the impact on diverse populations where additional features like age, medical conditions, environmental
differences, socio-economic dependence, political dependence, population flow, and travel patterns are utilized
2
. CC-BY-NC 4.0 International licenseIt is made available under a
is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity.(which was not certified by peer review)preprint
The copyright holder for thisthis version posted November 27, 2020. ; https://doi.org/10.1101/2020.11.22.20232959doi: medRxiv preprint

for modeling. In this review, we avert the normative style of review articles on AI systems for COVID-19
and present an in-depth analysis focusing on the aforementioned two tasks. We also discuss the potential of
AI systems and how the worldwide AI community should respond to COVID-19 in the near term as well as
how we can learn from our experiences for future pandemics.
2. Search Strategy and Selection Criteria
The literature survey for research papers on existing work on COVID-19 (or pandemics in general) and AI
was done using IEEE Xplore, PubMed and Google Scholar for articles published between the time period
2019 and 2020 September. Only articles written in English were considered in this review. The keywords
used were [”COVID-19”, ”pandemic” or ”sars-cov-2”] and [”AI” or ”artificial intelligence” or ”machine
learning” or ”pattern recognition” or ”prediction” or ”forecasting”] and [”time” or ”location”, ”demography”
or ”country” or ”spatio-temporal”]. Papers were shortlisted from peer reviewed papers published or in press
for journals indexed in Scimago. These criteria resulted in 120 research papers. The texts were examined to
pick 49 research papers that matched the scope of this survey. This is illustrated in Fig. 1
3. Results
Our literature survey showed that spatio-temporal forecasting was performed either as a time series forecasting
problem or as a diversity aware analysis by taking the diversity of populations into account via one/multiple
parameter(s). The parameters being used are split into groups based on whether the parameter is inherent to
the individuals (intrinsic), the environment (extrinsic) or an activity performed by the individuals (dynamic).
The papers are grouped into sections depending on the parameters used to model the affected parties as given
in Table 1.
3.1. Spatio-Temporal modeling and forecasting
The first cluster of research papers on modeling and forecasting was based on spatial and temporal data alone.
This enabled us to identify the impact of AI usage on spatio-temporal data to facilitate the fight against
COVID-19 by obtaining predictions on the number of total patients in the future, thus giving insight on the
trajectory a country/state is heading in. It facilitates the future allocation of hospital resources, the lack
of which has caused widespread commotion in many countries.
13, 14
This data is also crucial in instructing
the authorities involved in policy and decision making, and will thereby ensure efficient containment of the
virus spread.
15
Several methods including statistical approaches, machine learning techniques, deep learning
models, and time series models have been evaluated in this landscape. The various AI models used and
example papers are listed in Fig. 3.
3
. CC-BY-NC 4.0 International licenseIt is made available under a
is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity.(which was not certified by peer review)preprint
The copyright holder for thisthis version posted November 27, 2020. ; https://doi.org/10.1101/2020.11.22.20232959doi: medRxiv preprint

Temporal modeling:
Temporal forecasting of COVID-19 infection cases have been evaluated using multiple deep learning models.
A multi-step prediction using the neural network models - Long Short Term Memory (LSTM), Convolutional
LSTM (ConvLSTM), Bidirectional LSTM (Bi-LSTM)- as a case study for Canada,
16
different states in
India,
17
and USA
18
have been studied. The Bi-LSTM model and the ConvLSTM models are shown to
outperform the other LSTM variants with a Mean Absolute Percentage Error (MAPE) of 3% for day ahead
predictions. Accuracy of variants of LSTMs are further compared with Gated Recurrent Units (GRU),
a Variational Auto-Encoder (VAE), and Support Vector Regression (SVR) models.
19, 20
The models are
evaluated on multiple countries where substantial data is available (USA, Italy, Spain, China, Australia) to
validate that the Bi-LSTM and VAE (MAPE less than 3%) models outperform the conventional models. A
data driven forecasting method has been developed to estimate the number of positive cases of COVID-19 in
India for the next 30 days.
21
The number of recovered cases, daily positive cases, and deceased have also
been estimated using LSTMs and curve fitting. In addition, a machine learning based random forest model
has been used to forecast the number of COVID-19 cases with a mean correlation coefficient R
2
of 0·914.
22
A novel statistical method has been developed to forecast the spread of COVID-19 globally. This method
considers lead-lag effects between different time series using the dynamic time warping technique to analyze
non linear relationships among nations.
23
Thus, it was able to determine underlying causal relationships such
as the origin of the virus and the forerunner in given regions. A Non linear Autoregressive Artificial Neural
Networks (NAR-ANN) and Auto Regressive Integrated Moving Average (ARIMA) model was used to forecast
the spread of COVID-19 in Egypt.
24
An analysis of COVID-19 deaths using reduced space Gaussian process
regression has shown a correlation coefficient of 98
·
9%.
25
In an attempt to solve the patient triage problem
related to COVID-19, researchers in Italy have formulated a discrete time markov chain model to predict
the number of COVID-19 cases, to thereby, efficiently allocate ICU resources across the country.
14
The
critical need for COVID-19 forecasting comes from the need to understand how to implement containment
strategies while balancing its impact on the country’s economy and thereby the livelihood of people. From an
economical impact standpoint, a modified ARIMA model was developed to forecast the number of COVID-19
cases and the stock market in Spain
26
for the given period. ARIMA has also been ensembled with Wavelet
Transforms to model stationary and non-stationary trends using a 10-day forecast.
27
Epidemic modeling in the past has extensively used compartment models, especially the Susceptible -
Infective - Removed (SIR) model and its variants. Researchers in China have implemented a dynamic
Susceptible Exposed Infectious Removed (SEIR) model along with an Artificial Intelligence model to predict
the COVID-19 spread in China and identify underlying patterns in the spread.
28
A modified SEIR model
has been implemented to forecast the spread of COVID-19 and its burden on hospital care under varying
social distancing conditions.
29
The study concludes that the best parameter to assess the effectiveness of
4
. CC-BY-NC 4.0 International licenseIt is made available under a
is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity.(which was not certified by peer review)preprint
The copyright holder for thisthis version posted November 27, 2020. ; https://doi.org/10.1101/2020.11.22.20232959doi: medRxiv preprint

confinement and risk of virus diffusion, is the average number of daily contacts in a population (c).
Spatio-temporal modeling:
Researchers have focused on modeling and forecasting the spread of COVID-19 in the spatio-temporal domain
to identify not only ‘‘how much” the disease has spread but also ‘‘where” it has spread to. A study conducted
for Germany has developed a memory based integro-differential network model to predict spatio-temporal
outbreak dynamics such as number of infections, hospitalization rates, and demands on ICU due to COVID-19
at state level.
13
The model takes into account effects of different containment strategies, event and contact
restrictions, and different courses the infection may take; which is not possible when dealing with traditional
SIR models. A novel approach is taken using Moran’s I test to find regional correlations of COVID-19 cases
in China.
30, 31
The spatial association between states are modelled into the following six types:
30
1) Sharing
of borders 2) Euclidean (Shortest) distance 3) Population 4) Population density 5) Number of doctors and
hospitals 6) Number of medical beds. Results show high positive correlation between an infected region
and its adjacent regions for the first five models. This method is useful for predicting outbreaks in specific
regions, which in turn will allow policymakers to take proactive measures to prevent COVID-19 spread to
adjacent regions. The county level spread of COVID-19 in relation to the healthcare capacities in Ohio,
USA is predicted and the results show that the disease spreads much faster in counties that facilitate air
transportation to other counties.
32
This shows that similar to attributes such as population, underlying
spatio-temporal attributes such as inter-state travel can be employed to predict the dynamic spread of the
pandemic.
3.2. Modeling the impact on diverse populations
In this section, we review methods that group the population into clusters based on different factors such
as occupation, age and other such parameters and analyze COVID-19 spread in those demographics. An
overview of what characterizes the population diversity is given in Fig. 4.
The importance of this diversity/context awareness of information for handling the pandemic across the
globe has been studied.
33
Even within similar geographies, socio-economic factors have been shown to have
an effect on the spread and severity of the pandemic.
34
This work shows why the analysis, prediction and
mitigation of COVID-19 related issues should be done considering the context (diversity of the population)
for best results.
Models developed to handle diversity awareness are mostly mappings between higher dimensional spaces (in
cases where the context is passed as an input) with the capability to capture the multi-modal behavioral of
data. We see multi-variate statistics, time series models, artificial neural networks and other AI models being
used in this landscape. Key challenges in this domain are handling non-uniformly sampled data, incomplete
data and figuring out the context without it being readily fed into the models.
5
. CC-BY-NC 4.0 International licenseIt is made available under a
is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity.(which was not certified by peer review)preprint
The copyright holder for thisthis version posted November 27, 2020. ; https://doi.org/10.1101/2020.11.22.20232959doi: medRxiv preprint

Citations
More filters
01 Jan 2020
TL;DR: Prolonged viral shedding provides the rationale for a strategy of isolation of infected patients and optimal antiviral interventions in the future.
Abstract: Summary Background Since December, 2019, Wuhan, China, has experienced an outbreak of coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Epidemiological and clinical characteristics of patients with COVID-19 have been reported but risk factors for mortality and a detailed clinical course of illness, including viral shedding, have not been well described. Methods In this retrospective, multicentre cohort study, we included all adult inpatients (≥18 years old) with laboratory-confirmed COVID-19 from Jinyintan Hospital and Wuhan Pulmonary Hospital (Wuhan, China) who had been discharged or had died by Jan 31, 2020. Demographic, clinical, treatment, and laboratory data, including serial samples for viral RNA detection, were extracted from electronic medical records and compared between survivors and non-survivors. We used univariable and multivariable logistic regression methods to explore the risk factors associated with in-hospital death. Findings 191 patients (135 from Jinyintan Hospital and 56 from Wuhan Pulmonary Hospital) were included in this study, of whom 137 were discharged and 54 died in hospital. 91 (48%) patients had a comorbidity, with hypertension being the most common (58 [30%] patients), followed by diabetes (36 [19%] patients) and coronary heart disease (15 [8%] patients). Multivariable regression showed increasing odds of in-hospital death associated with older age (odds ratio 1·10, 95% CI 1·03–1·17, per year increase; p=0·0043), higher Sequential Organ Failure Assessment (SOFA) score (5·65, 2·61–12·23; p Interpretation The potential risk factors of older age, high SOFA score, and d-dimer greater than 1 μg/mL could help clinicians to identify patients with poor prognosis at an early stage. Prolonged viral shedding provides the rationale for a strategy of isolation of infected patients and optimal antiviral interventions in the future. Funding Chinese Academy of Medical Sciences Innovation Fund for Medical Sciences; National Science Grant for Distinguished Young Scholars; National Key Research and Development Program of China; The Beijing Science and Technology Project; and Major Projects of National Science and Technology on New Drug Creation and Development.

4,408 citations

Journal ArticleDOI
TL;DR: In this article, the authors focused on studies related to the COVID-19 contagion simulation through transport networks and found 15 spread models of contagion with the SEIR model being the most widely used, followed by mathematical-based risk models.
Abstract: The COVID-19 pandemic has generated a huge volume of research from various disciplines, such as health sciences, social sciences, mathematical modeling, social network analysis, complex systems, decision-making processes, computer simulation, economics, among many others. One of the key problems has been to understand the diffusion processes of the virus, which quickly spread worldwide through transport networks, mainly air flights. Almost two years after start the pandemic, it is necessary to collect and synthesize the existing work on this matter. This work focuses on studies related to the COVID-19 contagion simulation through transport networks. In particular, we are specially interested in the different datasets and epidemiological models used. The search methodology consists of four exhaustive searches in Google Scholar carried out between January 2020 and January 2021. Of the 1786 findings, we chose 54 articles related to Covid-19 contagion modeling and simulation through transport networks. The results show 30 different data sources for the collection of air flights and 11 additional sources for maritime and land transport. These datasets are usually complemented with other data sources, local and international, with demographic information, economic data, and statistics of traceability of the pandemic. The findings also found 15 spread models of contagion, with the SEIR model being the most widely used, followed by mathematical-based risk models. This diversity of results validates the need for these types of compilation efforts since researchers do not have a single centralized repository to collect air flight data.

3 citations

Posted ContentDOI
22 Apr 2020
TL;DR: It is found that in Lombardy restrictive containment measures should be prolonged at least until early July to avoid a resurgence of hospitalizations; on the other hand, in Emilia-Romagna the number of hospitalized cases could be kept under a reasonable amount with a higher contact rate.
Abstract: The outbreak of coronavirus disease 2019 (COVID-19) was identified in Wuhan, China, in December 2019. As of 17 April 2020, more than 2 million cases of COVID-19 have been reported worldwide. Northern Italy is one of the world’s centers of active coronavirus cases. In this study, we predicted the spread of COVID-19 and its burden on hospital care under different conditions of social distancing in Lombardy and Emilia-Romagna, the two regions of Italy most affected by the epidemic. To do this, we used a Susceptible-Exposed-Infectious-Recovered (SEIR) deterministic model, which encompasses compartments relevant to public health interventions such as quarantine. A new compartment L was added to the model for isolated infected population, i.e., individuals tested positives that do not need hospital care. We found that in Lombardy restrictive containment measures should be prolonged at least until early July to avoid a resurgence of hospitalizations; on the other hand, in Emilia-Romagna the number of hospitalized cases could be kept under a reasonable amount with a higher contact rate. Our results suggest that territory-specific forecasts under different scenarios are crucial to enhance or take new containment measures during the epidemic.

2 citations

Journal ArticleDOI
TL;DR: A Dynamic Bayesian Network (DBN) is developed to predict community-level relative risk of COVID-19 infection at the census tract scale in the U.S. state of Indiana.
Abstract: As COVID-19 continues to impact the United States and the world at large it is becoming increasingly necessary to develop methods which predict local scale spread of the disease. This is especially important as newer variants of the virus are likely to emerge and threaten community spread. We develop a Dynamic Bayesian Network (DBN) to predict community-level relative risk of COVID-19 infection at the census tract scale in the U.S. state of Indiana. The model incorporates measures of social and environmental vulnerability—including environmental determinants of COVID-19 infection—into a spatial temporal prediction of infection relative risk 1-month into the future. The DBN significantly outperforms five other modeling techniques used for comparison and which are typically applied in spatial epidemiological applications. The logic behind the DBN also makes it very well-suited for spatial-temporal prediction and for “what-if” analysis. The research results also highlight the need for further research using DBN-type approaches that incorporate methods of artificial intelligence into modeling dynamic processes, especially prominent within spatial epidemiologic applications.

2 citations

Journal ArticleDOI
TL;DR: In this paper, the spatial differentiation of the structure and homogeneity of the system in which SARS-CoV-2 occurs, as well as spatial concentration of people infected was investigated in a period of two infection waves in Germany.
Abstract: Among numerous publications about the SARS-CoV-2, many articles present research from the geographic point of view The cartographic research method used in this area of science can be successfully applied to analyze the spatiotemporal characteristics of the pandemic using limited data and can be useful for a quick and preliminary assessment of the spread of infections In this paper, research on the spatial differentiation of the structure and homogeneity of the system in which SARS-CoV-2 occurs, as well as spatial concentration of people infected was undertaken The phenomena were investigated in a period of two infection waves in Germany: in spring and autumn 2020 We applied the potential model, entropy, centrographic method, and Lorenz curve in spatial analysis The potentials model made it possible to distinguish core regions with a high level of the growth of new infections, along with areas of their impact, and regions with a low level of generation of new infections The entropy showed the spatial distribution of differentiation of the studied system and the change of these characteristics between spring and autumn The concentration method allowed for spatial and numerical demonstration of the concentration of infected population in a given area We wanted to show that it is possible to draw meaningful conclusions about the pandemic characteristics using only basic data about infections, along with proper cartographic methods The results can be used to designate the zones of the greatest threats, and thus, the areas where the most intense actions should be taken

2 citations

References
More filters
Proceedings Article
03 Dec 2012
TL;DR: The state-of-the-art performance of CNNs was achieved by Deep Convolutional Neural Networks (DCNNs) as discussed by the authors, which consists of five convolutional layers, some of which are followed by max-pooling layers, and three fully-connected layers with a final 1000-way softmax.
Abstract: We trained a large, deep convolutional neural network to classify the 1.2 million high-resolution images in the ImageNet LSVRC-2010 contest into the 1000 different classes. On the test data, we achieved top-1 and top-5 error rates of 37.5% and 17.0% which is considerably better than the previous state-of-the-art. The neural network, which has 60 million parameters and 650,000 neurons, consists of five convolutional layers, some of which are followed by max-pooling layers, and three fully-connected layers with a final 1000-way softmax. To make training faster, we used non-saturating neurons and a very efficient GPU implementation of the convolution operation. To reduce overriding in the fully-connected layers we employed a recently-developed regularization method called "dropout" that proved to be very effective. We also entered a variant of this model in the ILSVRC-2012 competition and achieved a winning top-5 test error rate of 15.3%, compared to 26.2% achieved by the second-best entry.

73,978 citations

Proceedings Article
12 Jun 2017
TL;DR: This paper proposed a simple network architecture based solely on an attention mechanism, dispensing with recurrence and convolutions entirely and achieved state-of-the-art performance on English-to-French translation.
Abstract: The dominant sequence transduction models are based on complex recurrent orconvolutional neural networks in an encoder and decoder configuration. The best performing such models also connect the encoder and decoder through an attentionm echanisms. We propose a novel, simple network architecture based solely onan attention mechanism, dispensing with recurrence and convolutions entirely.Experiments on two machine translation tasks show these models to be superiorin quality while being more parallelizable and requiring significantly less timeto train. Our single model with 165 million parameters, achieves 27.5 BLEU onEnglish-to-German translation, improving over the existing best ensemble result by over 1 BLEU. On English-to-French translation, we outperform the previoussingle state-of-the-art with model by 0.7 BLEU, achieving a BLEU score of 41.1.

52,856 citations

Journal ArticleDOI
TL;DR: Wang et al. as discussed by the authors used univariable and multivariable logistic regression methods to explore the risk factors associated with in-hospital death, including older age, high SOFA score and d-dimer greater than 1 μg/mL.

20,189 citations

Journal ArticleDOI
TL;DR: These early estimates give an indication of the fatality ratio across the spectrum of COVID-19 disease and show a strong age gradient in risk of death.
Abstract: Background In the face of rapidly changing data, a range of case fatality ratio estimates for coronavirus disease 2019 (COVID-19) have been produced that differ substantially in magnitude. We aimed to provide robust estimates, accounting for censoring and ascertainment biases. Methods We collected individual-case data for patients who died from COVID-19 in Hubei, mainland China (reported by national and provincial health commissions to Feb 8, 2020), and for cases outside of mainland China (from government or ministry of health websites and media reports for 37 countries, as well as Hong Kong and Macau, until Feb 25, 2020). These individual-case data were used to estimate the time between onset of symptoms and outcome (death or discharge from hospital). We next obtained age-stratified estimates of the case fatality ratio by relating the aggregate distribution of cases to the observed cumulative deaths in China, assuming a constant attack rate by age and adjusting for demography and age-based and location-based under-ascertainment. We also estimated the case fatality ratio from individual line-list data on 1334 cases identified outside of mainland China. Using data on the prevalence of PCR-confirmed cases in international residents repatriated from China, we obtained age-stratified estimates of the infection fatality ratio. Furthermore, data on age-stratified severity in a subset of 3665 cases from China were used to estimate the proportion of infected individuals who are likely to require hospitalisation. Findings Using data on 24 deaths that occurred in mainland China and 165 recoveries outside of China, we estimated the mean duration from onset of symptoms to death to be 17·8 days (95% credible interval [CrI] 16·9-19·2) and to hospital discharge to be 24·7 days (22·9-28·1). In all laboratory confirmed and clinically diagnosed cases from mainland China (n=70 117), we estimated a crude case fatality ratio (adjusted for censoring) of 3·67% (95% CrI 3·56-3·80). However, after further adjusting for demography and under-ascertainment, we obtained a best estimate of the case fatality ratio in China of 1·38% (1·23-1·53), with substantially higher ratios in older age groups (0·32% [0·27-0·38] in those aged Interpretation These early estimates give an indication of the fatality ratio across the spectrum of COVID-19 disease and show a strong age gradient in risk of death. Funding UK Medical Research Council.

3,271 citations

Journal ArticleDOI
06 Mar 2020-Science
TL;DR: The results suggest that early detection, hand washing, self-isolation, and household quarantine will likely be more effective than travel restrictions at mitigating this pandemic, and sustained 90% travel restrictions to and from mainland China only modestly affect the epidemic trajectory unless combined with a 50% or higher reduction of transmission in the community.
Abstract: Motivated by the rapid spread of coronavirus disease 2019 (COVID-19) in mainland China, we use a global metapopulation disease transmission model to project the impact of travel limitations on the national and international spread of the epidemic. The model is calibrated on the basis of internationally reported cases and shows that, at the start of the travel ban from Wuhan on 23 January 2020, most Chinese cities had already received many infected travelers. The travel quarantine of Wuhan delayed the overall epidemic progression by only 3 to 5 days in mainland China but had a more marked effect on the international scale, where case importations were reduced by nearly 80% until mid-February. Modeling results also indicate that sustained 90% travel restrictions to and from mainland China only modestly affect the epidemic trajectory unless combined with a 50% or higher reduction of transmission in the community.

2,949 citations

Frequently Asked Questions (20)
Q1. What contributions have the authors mentioned in the paper "Use of artificial intelligence on spatio-temporal data to generate insights during covid-19 pandemic: a review" ?

In this review, the authors present a comprehensive analysis of the use of AI techniques for spatio-temporal modeling and forecasting and impact modeling on diverse populations as it relates to COVID-19. Furthermore, the authors catalogue the articles in these areas based on spatio-temporal modeling, intrinsic parameters, extrinsic parameters, dynamic parameters and multivariate inputs ( to ascertain the penetration of AI usage in each sub area ). It is made available under a is the author/funder, who has granted medRxiv a license to display the preprint in perpetuity. This preprint reports new research that has not been certified by peer review and should not be used to guide clinical practice. The authors conclude by listing potential paths of research for which AI based techniques can be used for greater impact in tackling the pandemic. 

The literature survey has uncovered two key application areas in which AI is used -- predicting the future impact of COVID-19 on populations and uncovering the differential impact of COVID-19 on diverse segments of the population. Table 3 lists a few COVID-19 related issues for which AI may be an ideal candidate. 66 Due to the improvement in processing power of mobile devices, AI algorithms can be adapted to solving problems such as proximity identification and improve the accuracy and reliability of these systems through adaptation and real-time learning. Graph Neural Networks ( GNN ) can be used to model and identify specific events in the spatial and/or temporal domain. 

Key challenges in this domain are handling non-uniformly sampled data, incomplete data and figuring out the context without it being readily fed into the models. 

Models developed to handle diversity awareness are mostly mappings between higher dimensional spaces (in cases where the context is passed as an input) with the capability to capture the multi-modal behavioral of data. 

The spatial information can be modelled through graphs and the information can be propagated within the nodes through message passing. 

In addition, a machine learning based random forest model has been used to forecast the number of COVID-19 cases with a mean correlation coefficient R2 of 0·914.22A novel statistical method has been developed to forecast the spread of COVID-19 globally. 

The literature survey for research papers on existing work on COVID-19 (or pandemics in general) and AI was done using IEEE Xplore, PubMed and Google Scholar for articles published between the time period 2019 and 2020 September. 

A large portion of annual investment (US$ 1·7 billion in 201869) for R&D in the intersection of AI and healthcare comes from tech corporations such as Google and Facebook.70 

Deep clustering techniques based on convolution neural networks have outperformed traditional methods64 for such clustering problems. 

Another study developed a real-time risk assessment method for future cases in terms of fatality rate ofan affected country, using population density, healthcare resources, and government enforced preventive measures. 

The study concludes that the best parameter to assess the effectiveness ofconfinement and risk of virus diffusion, is the average number of daily contacts in a population (c). 

Since a major portion of the AI research and development ends up in commercial deployment, they are not made available to the public. 

with further proliferation of articles, a need for more rigorous review has emerged, specifically, reviews that catalogue projects based on their specific utilization of AI i.e. cataloguing based on which tasks are achieved by AI and how. 

This shows that similar to attributes such as population, underlying spatio-temporal attributes such as inter-state travel can be employed to predict the dynamic spread of the pandemic. 

In an attempt to solve the patient triage problem related to COVID-19, researchers in Italy have formulated a discrete time markov chain model to predict the number of COVID-19 cases, to thereby, efficiently allocate ICU resources across the country. 

The number of future cases was predicted using an ARIMA model, and a regression tree algorithm was used to validate the argument that the aforementioned variables have the highest impact on fatality rates in those countries. 

A data driven forecasting method has been developed to estimate the number of positive cases of COVID-19 in India for the next 30 days. 

Another similar study (using ANN based differential equations and particle swarm algorithms) shows that population density (followed by relative humidity) has a higher impact on the spread of COVID-19 in comparison to temperature and wind speed. 

Modeling the effect of population flow with consideration on to the geography has outperformed the naive population flow models in terms of accuracy. 

This data is also crucial in instructing the authorities involved in policy and decision making, and will thereby ensure efficient containment of the virus spread.