W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.
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W-IQ-TREE supports multiple sequence types in common alignment formats and a wide range of evolutionary models including mixture and partition models, performing fast model selection, partition scheme finding, efficient tree reconstruction, ultrafast bootstrapping, branch tests, and tree topology tests.Abstract:
This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE supports multiple sequence types (DNA, protein, codon, binary and morphology) in common alignment formats and a wide range of evolutionary models including mixture and partition models. W-IQ-TREE performs fast model selection, partition scheme finding, efficient tree reconstruction, ultrafast bootstrapping, branch tests, and tree topology tests. All computations are conducted on a dedicated computer cluster and the users receive the results via URL or email. W-IQ-TREE is available at http://iqtree.cibiv.univie.ac.at It is free and open to all users and there is no login requirement.read more
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Complete biosynthesis of cannabinoids and their unnatural analogues in yeast
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DRAM for distilling microbial metabolism to automate the curation of microbiome function
Michael Shaffer,Mikayla A. Borton,Bridget B. McGivern,Ahmed A. Zayed,Sabina Leanti La Rosa,Lindsey M. Solden,Pengfei Liu,Adrienne B. Narrowe,Josué Rodríguez-Ramos,Benjamin Bolduc,M. Consuelo Gazitúa,Rebecca A. Daly,Garrett J. Smith,Dean R. Vik,Phillip B. Pope,Matthew B. Sullivan,Simon Roux,Kelly C. Wrighton +17 more
TL;DR: DRAM (Distilled and Refined Annotation of Metabolism) is presented, a framework to translate the deluge of microbiome-based genomic information into a catalog of microbial traits and provides critical metabolic profiling capabilities that decipher mechanisms underpinning microbiome function.
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AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential.
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Journal Article
Complete biosynthesis of cannabinoids and their unnatural analogues in yeast (2019) (vol 567, pg 123, 2019)
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