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Journal ArticleDOI

White matter fiber tractography: why we need to move beyond DTI.

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TLDR
This comprehensive study shows that the most widely used clinical tractography method results in systematically unreliable and clinically misleading information, and needs to move beyond the diffusion tensor framework to begin to provide neurosurgeons with biologically reliable tractography information.
Abstract
Object Diffusion-based MRI tractography is an imaging tool increasingly used in neurosurgical procedures to generate 3D maps of white matter pathways as an aid to identifying safe margins of resection. The majority of white matter fiber tractography software packages currently available to clinicians rely on a fundamentally flawed framework to generate fiber orientations from diffusion-weighted data, namely diffusion tensor imaging (DTI). This work provides the first extensive and systematic exploration of the practical limitations of DTI-based tractography and investigates whether the higher-order tractography model constrained spherical deconvolution provides a reasonable solution to these problems within a clinically feasible timeframe. Methods Comparison of tractography methodologies in visualizing the corticospinal tracts was made using the diffusion-weighted data sets from 45 healthy controls and 10 patients undergoing presurgical imaging assessment. Tensor-based and constrained spherical deconvolut...

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Citations
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Journal ArticleDOI

Multi-tissue constrained spherical deconvolution for improved analysis of multi-shell diffusion MRI data

TL;DR: The aim of this study is to incorporate support for multi-shell data into the CSD approach as well as to exploit the unique b-value dependencies of the different tissue types to estimate a multi-tissue ODF.
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Anatomical accuracy of brain connections derived from diffusion MRI tractography is inherently limited

TL;DR: The results indicate that, even with high-quality data, DWI tractography alone is unlikely to provide an anatomically accurate map of the brain connectome, and suggest that there is an inherent limitation in determining long-range anatomical projections based on voxel-averaged estimates of local fiber orientation obtained from DWI data that is likely to be overcome by improvements in data acquisition and analysis alone.
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Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation

TL;DR: In this article, the authors review, systematize and discuss models of diffusion in neuronal tissue, by putting them into an overarching physical context of coarse-graining over an increasing diffusion length scale.
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Diffusion MRI fiber tractography of the brain

TL;DR: An overview of the key concepts of tractography, the technical considerations at play, and the different types of tractographic algorithm, as well as the common misconceptions and mistakes that surround them are provided.
Journal ArticleDOI

Current Clinical Brain Tumor Imaging.

TL;DR: An overview of current magnetic resonance imaging methods routinely employed in the care of the brain tumor patient focuses on advanced techniques including diffusion, perfusion, spectroscopy, tractography, and functional MRI as they pertain to noninvasive characterization of brain tumors and pretreatment evaluation.
References
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Journal ArticleDOI

User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability

TL;DR: The methods and software engineering philosophy behind this new tool, ITK-SNAP, are described and the results of validation experiments performed in the context of an ongoing child autism neuroimaging study are provided, finding that SNAP is a highly reliable and efficient alternative to manual tracing.
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MR diffusion tensor spectroscopy and imaging.

TL;DR: Once Deff is estimated from a series of NMR pulsed-gradient, spin-echo experiments, a tissue's three orthotropic axes can be determined and the effective diffusivities along these orthotropic directions are the eigenvalues of Deff.
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Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.

TL;DR: This study indicates that SyN, with cross-correlation, is a reliable method for normalizing and making anatomical measurements in volumetric MRI of patients and at-risk elderly individuals.
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Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging.

TL;DR: It is shown that neuronal pathways in the rat brain can be probed in situ using high‐resolution three‐dimensional diffusion magnetic resonance imaging and a newly designed tracking approach.
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Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?

TL;DR: It is shown that multi-fibre tractography offers significant advantages in sensitivity when tracking non-dominant fibre populations, but does not dramatically change tractography results for the dominant pathways.
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