How to read a maximum likelihood phylogenetic tree?
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59 Citations | The new approach is a valuable alternative to existing treeevaluating methods, because it integrates phylogenetic information from the ML tree with that of trees that do not differ significantly from the ML tree. |
58 Citations | This work also guarantees the consistency of the ML estimate of the branch lengths of a phylogenetic tree, given the correct tree topology and nucleotide substitution model. |
Bayesian inference provides a general framework for phylogenetic analysis, able to implement complex models of sequence evolution and to provide a coherent treatment of uncertainty for the groups on the tree. | |
Our results rely on novel mathematical understanding of the log-likelihood function on the space of phylogenetic trees. | |
45 Citations | We demonstrate that tree topologies used to estimate likelihood model parameters can materially affect phylogenetic searches. |
60 Citations | The model also meshes well with maximum likelihood methods for phylogenetic analysis. |
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