African lungfish

About: African lungfish is a research topic. Over the lifetime, 175 publications have been published within this topic receiving 3661 citations.

Nuclear protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates

Abstract: The colonization of land by tetrapod ancestors is one of the major questions in the evolution of vertebrates. Despite intense molecular phylogenetic research on this problem during the last 15 years, there is, until now, no statistically supported answer to the question of whether coelacanths or lungfish are the closest living relatives of tetrapods. We determined DNA sequences of the nuclear-encoded recombination activating genes (Rag1 and Rag2) from all three major lungfish groups, the Australian Neoceratodis forsteri, the South American Lepidosiren paradoxa and the African lungfish Protopterus dolloi, and the Indonesian coelacanth Latimeria menadoensis. Phylogenetic analyses of both the single gene and the concatenated data sets of RAG1 and RAG2 found that the lungfishes are the closest living relatives of the land vertebrates. These results are supported by high bootstrap values, Bayesian posterior probabilities, and likelihood ratio tests.

Respiration in the African lungfish Protopterus aethiopicus. I. Respiratory properties of blood and normal patterns of breathing and gas exchange.

Abstract: 1. Respiratory properties of blood and pattern of aerial and aquatic breathing and gas exchange have been studied in the African lungfish, Protopterus aethiopicus . 2. The mean value for haematocrit was 25%. Haemoglobin concentration was 6.2 g% and O2 capacity 6.8 vol. %. 3. The affinity of haemoglobin for O2 was high. P 50 was 10 mm. Hg at P COCO2, 6 mm. Hg and 25 °C. The Bohr effect was smaller than for the Australian lungfish, Neoceratodus , but exceeded that for the South American lungfish, Lepidosiren . The O2 affinity showed a larger temperature shift in Protopterus than Neoceratodus . 4. The CO2 combining power and the over-all buffering capacity of the blood exceeded values for the other lungfishes. 5. Both aerial and aquatic breathing showed a labile frequency. Air exposure elicited a marked increase in the rate of air breathing. 6. When resting in aerated water, air breathing accounted for about 90% of the O2 absorption. Aquatic gas exchange with gills and skin was 2.5 times more effective than pulmonary gas exchange in removing CO2. The low gas-exchange ratio for the lung diminished further in the interval between breaths. 7. Protopterus showed respiratory independence and a maintained O2 uptake until the ambient O2 and CO2 tensions were 85 and 35 mm. Hg respectively. A further reduction in O2 tension caused an abrupt fall in the oxygen uptake. 8. Gas analysis of blood samples drawn from unanaesthetized, free-swimming fishes attested to the important role of the lung in gas exchange and the high degree of functional separation in the circulation of oxygenated and deoxygenated blood. This work was supported by grant GB 4038 from the National Science Foundation and grant HE-08405 from the National Institute of Health. Established Investigator, American Heart Association. Work supported by Northeastern Chapter, Washington State Heart Association.

The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates.

Abstract: The complete DNA sequence (16,646 bp) of the mitochondrial genome of the African lungfish, Protopterus dolloi, was determined. The evolutionary position of lungfish as possibly the closest living relative among fish of land vertebrates made its mitochondrial DNA sequence particularly interesting. Its mitochondrial gene order conforms to the consensus vertebrate gene order. Several sequence motifs and secondary structures likely involved in the regulation of the initiation of replication and transcription of the mitochondrial genome are conserved in the lungfish and are more similar to those of land vertebrates than those of ray-finned fish. A novel feature discovered is that the putative origin of L-strand replication partially overlaps the adjacent tRNA(Cys). The phylogenetic analyses of genes coding for tRNAs and proteins confirm the intermediate phylogenetic position of lungfish between ray-finned fishes and tetrapods. The complete nucleotide sequence of the African lungfish mitochondrial genome was used to estimate which mitochondrial genes are most appropriate to elucidate deep branch phylogenies. Only a combined set of either protein or tRNA mitochondrial genes (but not each gene alone) is able to confidently recover the expected phylogeny among vertebrates that have diverged up to but not over ~400 mya.

Searching for the closest living relative(s) of tetrapods through evolutionary analyses of mitochondrial and nuclear data.

Abstract: The phylogenetic relationships of the African lungfish (Protopterus dolloi) and the coelacanth (Latimeria chalumnae) with respect to tetrapods were analyzed using complete mitochondrial genome DNA sequences. A lungfish + coelancanth clade was favored by maximum parsimony (although this result is dependent on which transition:transversion weights are applied), and a lungfish + tetrapod clade was supported by neighbor-joining and maximum-likelihood analyses. These two hypotheses received the strongest statistical and bootstrap support to the exclusion of the third alternative, the coelacanth + tetrapod sister group relationship. All mitochondrial protein coding genes combined favor a lungfish + tetrapod grouping. We can confidently reject the hypothesis that the coelacanth is the closest living relative of tetrapods. When the complete mitochondrial sequence data were combined with nuclear 28S rRNA gene data, a lungfish + coelacanth clade was supported by maximum parsimony and maximum likelihood, but a lungfish + tetrapod clade was favored by neighbor-joining. The seeming conflicting results based on different data sets and phylogenetic methods were typically not statistically strongly supported based on Kishino-Hasegawa and Templeton tests, although they were often supported by strong bootstrap values. Differences in rate of evolution of the different mitochondrial genes (slowly evolving genes such as the cytochrome oxidase and tRNA genes favored a lungfish + coelacanth clade, whereas genes of relatively faster substitution rate, such as several NADH dehydrogenase genes, supported a lungfish + tetrapod grouping), as well as the rapid radiation of the lineages back in the Devonian, rather than base compositional biases among taxa seem to be directly responsible for the remaining uncertainty in accepting one of the two alternate hypotheses.