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Showing papers on "Biodiversity published in 2014"


Journal ArticleDOI
25 Jul 2014-Science
TL;DR: Defaunation is both a pervasive component of the planet’s sixth mass extinction and also a major driver of global ecological change.
Abstract: We live amid a global wave of anthropogenically driven biodiversity loss: species and population extirpations and, critically, declines in local species abundance. Particularly, human impacts on animal biodiversity are an under-recognized form of global environmental change. Among terrestrial vertebrates, 322 species have become extinct since 1500, and populations of the remaining species show 25% average decline in abundance. Invertebrate patterns are equally dire: 67% of monitored populations show 45% mean abundance decline. Such animal declines will cascade onto ecosystem functioning and human well-being. Much remains unknown about this “Anthropocene defaunation”; these knowledge gaps hinder our capacity to predict and limit defaunation impacts. Clearly, however, defaunation is both a pervasive component of the planet’s sixth mass extinction and also a major driver of global ecological change.

2,697 citations


Journal ArticleDOI
30 May 2014-Science
TL;DR: The biodiversity of eukaryote species and their extinction rates, distributions, and protection is reviewed, and what the future rates of species extinction will be, how well protected areas will slow extinction Rates, and how the remaining gaps in knowledge might be filled are reviewed.
Abstract: Background A principal function of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES) is to “perform regular and timely assessments of knowledge on biodiversity.” In December 2013, its second plenary session approved a program to begin a global assessment in 2015. The Convention on Biological Diversity (CBD) and five other biodiversity-related conventions have adopted IPBES as their science-policy interface, so these assessments will be important in evaluating progress toward the CBD’s Aichi Targets of the Strategic Plan for Biodiversity 2011–2020. As a contribution toward such assessment, we review the biodiversity of eukaryote species and their extinction rates, distributions, and protection. We document what we know, how it likely differs from what we do not, and how these differences affect biodiversity statistics. Interestingly, several targets explicitly mention “known species”—a strong, if implicit, statement of incomplete knowledge. We start by asking how many species are known and how many remain undescribed. We then consider by how much human actions inflate extinction rates. Much depends on where species are, because different biomes contain different numbers of species of different susceptibilities. Biomes also suffer different levels of damage and have unequal levels of protection. How extinction rates will change depends on how and where threats expand and whether greater protection counters them. Different visualizations of species biodiversity. ( A ) The distributions of 9927 bird species. ( B ) The 4964 species with smaller than the median geographical range size. ( C ) The 1308 species assessed as threatened with a high risk of extinction by BirdLife International for the Red List of Threatened Species of the International Union for Conservation of Nature. ( D ) The 1080 threatened species with less than the median range size. (D) provides a strong geographical focus on where local conservation actions can have the greatest global impact. Additional biodiversity maps are available at www.biodiversitymapping.org. Advances Recent studies have clarified where the most vulnerable species live, where and how humanity changes the planet, and how this drives extinctions. These data are increasingly accessible, bringing greater transparency to science and governance. Taxonomic catalogs of plants, terrestrial vertebrates, freshwater fish, and some marine taxa are sufficient to assess their status and the limitations of our knowledge. Most species are undescribed, however. The species we know best have large geographical ranges and are often common within them. Most known species have small ranges, however, and such species are typically newer discoveries. The numbers of known species with very small ranges are increasing quickly, even in well-known taxa. They are geographically concentrated and are disproportionately likely to be threatened or already extinct. We expect unknown species to share these characteristics. Current rates of extinction are about 1000 times the background rate of extinction. These are higher than previously estimated and likely still underestimated. Future rates will depend on many factors and are poised to increase. Finally, although there has been rapid progress in developing protected areas, such efforts are not ecologically representative, nor do they optimally protect biodiversity. Outlook Progress on assessing biodiversity will emerge from continued expansion of the many recently created online databases, combining them with new global data sources on changing land and ocean use and with increasingly crowdsourced data on species’ distributions. Examples of practical conservation that follow from using combined data in Colombia and Brazil can be found at www.savingspecies.org and www.youtube.com/watch?v=R3zjeJW2NVk.

2,360 citations


Journal ArticleDOI
28 Nov 2014-Science
TL;DR: Diversity of most fungal groups peaked in tropical ecosystems, but ectomycorrhizal fungi and several fungal classes were most diverse in temperate or boreal ecosystems, and manyfungal groups exhibited distinct preferences for specific edaphic conditions (such as pH, calcium, or phosphorus).
Abstract: Fungi play major roles in ecosystem processes, but the determinants of fungal diversity and biogeographic patterns remain poorly understood. Using DNA metabarcoding data from hundreds of globally distributed soil samples, we demonstrate that fungal richness is decoupled from plant diversity. The plant-to-fungus richness ratio declines exponentially toward the poles. Climatic factors, followed by edaphic and spatial variables, constitute the best predictors of fungal richness and community composition at the global scale. Fungi show similar latitudinal diversity gradients to other organisms, with several notable exceptions. These findings advance our understanding of global fungal diversity patterns and permit integration of fungi into a general macroecological framework.

2,346 citations


Journal ArticleDOI
27 Nov 2014-Nature
TL;DR: Recent progress in understanding belowground biodiversity and its role in determining the ecological and evolutionary responses of terrestrial ecosystems to current and future environmental change are reviewed.
Abstract: Evidence is mounting that the immense diversity of microorganisms and animals that live belowground contributes significantly to shaping aboveground biodiversity and the functioning of terrestrial ecosystems. Our understanding of how this belowground biodiversity is distributed, and how it regulates the structure and functioning of terrestrial ecosystems, is rapidly growing. Evidence also points to soil biodiversity as having a key role in determining the ecological and evolutionary responses of terrestrial ecosystems to current and future environmental change. Here we review recent progress and propose avenues for further research in this field.

2,074 citations


Journal ArticleDOI
TL;DR: Diversity loss has an effect as great as, or greater than, the effects of herbivory, fire, drought, nitrogen addition, elevated CO2, and other drivers of environm...
Abstract: Species diversity is a major determinant of ecosystem productivity, stability, invasibility, and nutrient dynamics. Hundreds of studies spanning terrestrial, aquatic, and marine ecosystems show that high-diversity mixtures are approximately twice as productive as monocultures of the same species and that this difference increases through time. These impacts of higher diversity have multiple causes, including interspecific complementarity, greater use of limiting resources, decreased herbivory and disease, and nutrient-cycling feedbacks that increase nutrient stores and supply rates over the long term. These experimentally observed effects of diversity are consistent with predictions based on a variety of theories that share a common feature: All have trade-off-based mechanisms that allow long-term coexistence of many different competing species. Diversity loss has an effect as great as, or greater than, the effects of herbivory, fire, drought, nitrogen addition, elevated CO2, and other drivers of environm...

1,631 citations


Journal ArticleDOI
21 Jan 2014-eLife
TL;DR: In this article, the authors present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes (sharks, rays, and chimaeras).
Abstract: The rapid expansion of human activities threatens ocean-wide biodiversity. Numerous marine animal populations have declined, yet it remains unclear whether these trends are symptomatic of a chronic accumulation of global marine extinction risk. We present the first systematic analysis of threat for a globally distributed lineage of 1,041 chondrichthyan fishes—sharks, rays, and chimaeras. We estimate that one-quarter are threatened according to IUCN Red List criteria due to overfishing (targeted and incidental). Large-bodied, shallow-water species are at greatest risk and five out of the seven most threatened families are rays. Overall chondrichthyan extinction risk is substantially higher than for most other vertebrates, and only one-third of species are considered safe. Population depletion has occurred throughout the world's ice-free waters, but is particularly prevalent in the Indo-Pacific Biodiversity Triangle and Mediterranean Sea. Improved management of fisheries and trade is urgently needed to avoid extinctions and promote population recovery.

1,467 citations


Journal ArticleDOI
TL;DR: It is found that the majority of urban bird and plant species are native in the world's cities, with the most common being Columba livia and Poa annua and few plants and birds are cosmopolitan.
Abstract: Urbanization contributes to the loss of the world's biodiversity and the homogenization of its biota. However, comparative studies of urban biodiversity leading to robust generalities of the status and drivers of biodiversity in cities at the global scale are lacking. Here, we compiled the largest global dataset to date of two diverse taxa in cities: birds (54 cities) and plants (110 cities). We found that the majority of urban bird and plant species are native in the world's cities. Few plants and birds are cosmopolitan, the most common being Columba livia and Poa annua. The density of bird and plant species (the number of species per km2) has declined substantially: only 8% of native bird and 25% of native plant species are currently present compared with estimates of non-urban density of species. The current density of species in cities and the loss in density of species was best explained by anthropogenic features (landcover, city age) rather than by non-anthropogenic factors (geography, climate, topography). As urbanization continues to expand, efforts directed towards the conservation of intact vegetation within urban landscapes could support higher concentrations of both bird and plant species. Despite declines in the density of species, cities still retain endemic native species, thus providing opportunities for regional and global biodiversity conservation, restoration and education.

1,100 citations


Journal ArticleDOI
TL;DR: Key priorities are to improve technologies and policies that promote more ecologically efficient food production while optimizing the allocation of lands to conservation and agriculture.
Abstract: The human population is projected to reach 11 billion this century, with the greatest increases in tropical developing nations. This growth, in concert with rising per-capita consumption, will require large increases in food and biofuel production. How will these megatrends affect tropical terrestrial and aquatic ecosystems and biodiversity? We foresee (i) major expansion and intensification of tropical agriculture, especially in Sub-Saharan Africa and South America; (ii) continuing rapid loss and alteration of tropical old-growth forests, woodlands, and semi-arid environments; (iii) a pivotal role for new roadways in determining the spatial extent of agriculture; and (iv) intensified conflicts between food production and nature conservation. Key priorities are to improve technologies and policies that promote more ecologically efficient food production while optimizing the allocation of lands to conservation and agriculture.

1,066 citations


Journal ArticleDOI
18 Apr 2014-Science
TL;DR: This work analyzes 100 time series from biomes across Earth to ask how diversity within assemblages is changing through time and detects systematic loss of α diversity, but community composition changed systematically through time, in excess of predictions from null models.
Abstract: The extent to which biodiversity change in local assemblages contributes to global biodiversity loss is poorly understood. We analyzed 100 time series from biomes across Earth to ask how diversity within assemblages is changing through time. We quantified patterns of temporal α diversity, measured as change in local diversity, and temporal β diversity, measured as change in community composition. Contrary to our expectations, we did not detect systematic loss of α diversity. However, community composition changed systematically through time, in excess of predictions from null models. Heterogeneous rates of environmental change, species range shifts associated with climate change, and biotic homogenization may explain the different patterns of temporal α and β diversity. Monitoring and understanding change in species composition should be a conservation priority.

990 citations


Journal ArticleDOI
TL;DR: In this paper, the authors report a spatially and temporally explicit quantification of Indonesian primary forest loss, which totalled over 602 Mha from 2000 to 2012 and increased on average by 47,600 ha per year.
Abstract: Extensive clearing of Indonesian primary forests results in increased greenhouse gas emissions and biodiversity loss However, there is no consensus on the areal extent and temporal trends of primary forest clearing in Indonesia Here we report a spatially and temporally explicit quantification of Indonesian primary forest loss, which totalled over 602 Mha from 2000 to 2012 and increased on average by 47,600 ha per year By 2012, annual primary forest loss in Indonesia was estimated to be higher than in Brazil (084 Mha and 046 Mha, respectively) Proportional loss of primary forests in wetland landforms increased and almost all clearing of primary forests occurred within degraded types, meaning logging preceded conversion processes Loss within official forest land uses that restrict or prohibit clearing totalled 40% of all loss within national forest land The increasing loss of Indonesian primary forests has significant implications for climate change mitigation and biodiversity conservation efforts Deforestation affects climate, biodiversity and other ecosystem services This study quantifies Indonesia’s increasing rate of primary forest loss, which runs counter to the declining rates of loss in Brazil The results highlight the value of thematically consistent and spatially and temporally explicit information in tracking forest change

810 citations


01 Jan 2014
TL;DR: The current frontiers of eDNA are examined, key aspects requiring improvement are outlined, and future developments and innovations for research are suggested.

Journal ArticleDOI
TL;DR: This work used path analysis to determine whether compound indices detected more relationships between diversities of different organisms and traits than more basic indices, and demonstrated that while common diversity indices may appear interchangeable in simple analyses, when considering complex interactions, the choice of index can profoundly alter the interpretation of results.
Abstract: Biodiversity, a multidimensional property of natural systems, is difficult to quantify partly because of the multitude of indices proposed for this purpose. Indices aim to describe general properties of communities that allow us to compare different regions, taxa, and trophic levels. Therefore, they are of fundamental importance for environmental monitoring and conservation, although there is no consensus about which indices are more appropriate and informative. We tested several common diversity indices in a range of simple to complex statistical analyses in order to determine whether some were better suited for certain analyses than others. We used data collected around the focal plant Plantago lanceolata on 60 temperate grassland plots embedded in an agricultural landscape to explore relationships between the common diversity indices of species richness (S), Shannon's diversity (H'), Simpson's diversity (D-1), Simpson's dominance (D-2), Simpson's evenness (E), and Berger-Parker dominance (BP). We calculated each of these indices for herbaceous plants, arbuscular mycorrhizal fungi, aboveground arthropods, belowground insect larvae, and P.lanceolata molecular and chemical diversity. Including these trait-based measures of diversity allowed us to test whether or not they behaved similarly to the better studied species diversity. We used path analysis to determine whether compound indices detected more relationships between diversities of different organisms and traits than more basic indices. In the path models, more paths were significant when using H', even though all models except that with E were equally reliable. This demonstrates that while common diversity indices may appear interchangeable in simple analyses, when considering complex interactions, the choice of index can profoundly alter the interpretation of results. Data mining in order to identify the index producing the most significant results should be avoided, but simultaneously considering analyses using multiple indices can provide greater insight into the interactions in a system.

Journal ArticleDOI
24 Apr 2014-Nature
TL;DR: Testing the hypothesis that herbaceous plant species losses caused by eutrophication may be offset by increased light availability due to herbivory demonstrates that nutrients and herbivores can serve as counteracting forces to control local plant diversity through light limitation, independent of site productivity, soil nitrogen, herbivore type and climate.
Abstract: Human alterations to nutrient cycles and herbivore communities are affecting global biodiversity dramatically. Ecological theory predicts these changes should be strongly counteractive: nutrient addition drives plant species loss through intensified competition for light, whereas herbivores prevent competitive exclusion by increasing ground-level light, particularly in productive systems. Here we use experimental data spanning a globally relevant range of conditions to test the hypothesis that herbaceous plant species losses caused by eutrophication may be offset by increased light availability due to herbivory. This experiment, replicated in 40 grasslands on 6 continents, demonstrates that nutrients and herbivores can serve as counteracting forces to control local plant diversity through light limitation, independent of site productivity, soil nitrogen, herbivore type and climate. Nutrient addition consistently reduced local diversity through light limitation, and herbivory rescued diversity at sites where it alleviated light limitation. Thus, species loss from anthropogenic eutrophication can be ameliorated in grasslands where herbivory increases ground-level light.

Journal ArticleDOI
TL;DR: Accumulating theoretical and empirical studies suggest that the single most important factor is kinetics: the temperature dependence of ecological and evolutionary rates.
Abstract: Known for centuries, the geographical pattern of increasing biodiversity from the poles to the equator is one of the most pervasive features of life on Earth. A longstanding goal of biogeographers has been to understand the primary factors that generate and maintain high diversity in the tropics. Many ‘historical’ and ‘ecological’ hypotheses have been proposed and debated, but there is still little consensus. Recent discussions have centred around two main phenomena: phylogenetic niche conservatism and ecological productivity. These two factors play important roles, but accumulating theoretical and empirical studies suggest that the single most important factor is kinetics: the temperature dependence of ecological and evolutionary rates. The relatively high temperatures in the tropics generate and maintain high diversity because ‘the Red Queen runs faster when she is hot’.

Journal ArticleDOI
08 May 2014-Nature
TL;DR: Reducing the functional diversity of decomposer organisms and plant litter types slowed the cycling of litter carbon and nitrogen, and the emergence of this general mechanism and the coherence of patterns across contrasting terrestrial and aquatic ecosystems suggest that biodiversity loss has consistent consequences for litter decomposition and the Cycling of major elements on broad spatial scales.
Abstract: The decomposition of dead organic matter is a major determinant of carbon and nutrient cycling in ecosystems, and of carbon fluxes between the biosphere and the atmosphere. Decomposition is driven by a vast diversity of organisms that are structured in complex food webs. Identifying the mechanisms underlying the effects of biodiversity on decomposition is critical given the rapid loss of species worldwide and the effects of this loss on human well-being. Yet despite comprehensive syntheses of studies on how biodiversity affects litter decomposition, key questions remain, including when, where and how biodiversity has a role and whether general patterns and mechanisms occur across ecosystems and different functional types of organism. Here, in field experiments across five terrestrial and aquatic locations, ranging from the subarctic to the tropics, we show that reducing the functional diversity of decomposer organisms and plant litter types slowed the cycling of litter carbon and nitrogen. Moreover, we found evidence of nitrogen transfer from the litter of nitrogen-fixing plants to that of rapidly decomposing plants, but not between other plant functional types, highlighting that specific interactions in litter mixtures control carbon and nitrogen cycling during decomposition. The emergence of this general mechanism and the coherence of patterns across contrasting terrestrial and aquatic ecosystems suggest that biodiversity loss has consistent consequences for litter decomposition and the cycling of major elements on broad spatial scales.

Journal ArticleDOI
TL;DR: It is affirmed that organic farming has large positive effects on biodiversity compared with conventional farming, but that the effect size varies with the organism group and crop studied, and is greater in landscapes with higher land‐use intensity.
Abstract: Summary 1. The benefits of organic farming to biodiversity in agricultural landscapes continue to be hotly debated, emphasizing the importance of precisely quantifying the effect of organic vs. conventional farming. 2. We conducted an updated hierarchical meta-analysis of studies that compared biodiversity under organic and conventional farming methods, measured as species richness. We calculated effect sizes for 184 observations garnered from 94 studies, and for each study, we obtained three standardized measures reflecting land-use intensity. We investigated the stability of effect sizes through time, publication bias due to the ‘file drawer’ problem, and consider whether the current literature is representative of global organic farming patterns. 3. On average, organic farming increased species richness by about 30%. This result has been robust over the last 30 years of published studies and shows no sign of diminishing. 4. Organic farming had a greater effect on biodiversity as the percentage of the landscape consisting of arable fields increased, that is, it is higher in intensively farmed regions. The average effect size and the response to agricultural intensification depend on taxonomic group, functional group and crop type. 5. There is some evidence for publication bias in the literature; however, our results are robust to its impact. Current studies are heavily biased towards northern and western Europe and North America, while other regions with large areas of organic farming remain poorly investigated. 6. Synthesis and applications. Our analysis affirms that organic farming has large positive effects on biodiversity compared with conventional farming, but that the effect size varies with the organism group and crop studied, and is greater in landscapes with higher land-use intensity. Decisions about where to site organic farms to maximize biodiversity will, however, depend on the costs as well as the potential benefits. Current studies have been heavily biased towards agricultural systems in the developed world. We recommend that future studies pay greater attention to other regions, in particular, areas with tropical, subtropical and Mediterranean climates, in which very few studies have been conducted.

Journal ArticleDOI
06 Feb 2014-Nature
TL;DR: This study shows experimentally that changes in plant diversity and species composition are caused by fungal pathogens and insect herbivores, and provides an overall test of the Janzen–Connell hypothesis.
Abstract: Tropical forests are important reservoirs of biodiversity, but the processes that maintain this diversity remain poorly understood. The Janzen-Connell hypothesis suggests that specialized natural enemies such as insect herbivores and fungal pathogens maintain high diversity by elevating mortality when plant species occur at high density (negative density dependence; NDD). NDD has been detected widely in tropical forests, but the prediction that NDD caused by insects and pathogens has a community-wide role in maintaining tropical plant diversity remains untested. We show experimentally that changes in plant diversity and species composition are caused by fungal pathogens and insect herbivores. Effective plant species richness increased across the seed-to-seedling transition, corresponding to large changes in species composition. Treating seeds and young seedlings with fungicides significantly reduced the diversity of the seedling assemblage, consistent with the Janzen-Connell hypothesis. Although suppressing insect herbivores using insecticides did not alter species diversity, it greatly increased seedling recruitment and caused a marked shift in seedling species composition. Overall, seedling recruitment was significantly reduced at high conspecific seed densities and this NDD was greatest for the species that were most abundant as seeds. Suppressing fungi reduced the negative effects of density on recruitment, confirming that the diversity-enhancing effect of fungi is mediated by NDD. Our study provides an overall test of the Janzen-Connell hypothesis and demonstrates the crucial role that insects and pathogens have both in structuring tropical plant communities and in maintaining their remarkable diversity.

Journal ArticleDOI
TL;DR: In this article, a systematic literature review was undertaken to analyse the linkages between different biodiversity attributes and 11 ecosystem services, and the majority of relationships between attributes and ecosystem services cited in the 530 studies were positive.
Abstract: A systematic literature review was undertaken to analyse the linkages between different biodiversity attributes and 11 ecosystem services. The majority of relationships between attributes and ecosystem services cited in the 530 studies were positive. For example, the services of water quality regulation, water flow regulation, mass flow regulation and landscape aesthetics were improved by increases in community and habitat area. Functional traits, such as richness and diversity, also displayed a predominantly positive relationship across the services, most commonly discussed for atmospheric regulation, pest regulation and pollination. A number of studies also discussed a positive correlation with stand age, particularly for atmospheric regulation. Species level traits were found to benefit a number of ecosystem services, with species abundance being particularly important for pest regulation, pollination and recreation, and species richness for timber production and freshwater fishing. Instances of biodiversity negatively affecting the examined ecosystem services were few in number for all ecosystem services, except freshwater provision. The review showed that ecosystem services are generated from numerous interactions occurring in complex systems. However, improving understanding of at least some of the key relationships between biodiversity and service provision will help guide effective management and protection strategies.

Journal ArticleDOI
TL;DR: In this article, the authors evaluated how congruent three commonly used metrics of diversity were among taxa for six groups of freshwater species and found that broad-scale patterns of species richness, threatened-species richness and endemism lack congruence among these metrics.
Abstract: Aim Global-scale studies are required to identify broad-scale patterns in the distributions of species, to evaluate the processes that determine diversity and to determine how similar or different these patterns and processes are among different groups of freshwater species. Broad-scale patterns of spatial variation in species distribution are central to many fundamental questions in macroecology and conservation biology. We aimed to evaluate how congruent three commonly used metrics of diversity were among taxa for six groups of freshwater species. Location Global. Methods We compiled geographical range data on 7083 freshwater species of mammals, amphibians, reptiles, fishes, crabs and crayfish to evaluate how species richness, richness of threatened species and endemism are distributed across freshwater ecosystems. We evaluated how congruent these measures of diversity were among taxa at a global level for a grid cell size of just under 1°. Results We showed that although the risk of extinction faced by freshwater decapods is quite similar to that of freshwater vertebrates, there is a distinct lack of spatial congruence in geographical range between different taxonomic groups at this spatial scale, and a lack of congruence among three commonly used metrics of biodiversity. The risk of extinction for freshwater species was consistently higher than for their terrestrial counterparts. Main conclusions We demonstrate that broad-scale patterns of species richness, threatened-species richness and endemism lack congruence among the six freshwater taxonomic groups examined. Invertebrate species are seldom taken into account in conservation planning. Our study suggests that both the metric of biodiversity and the identity of the taxa on which conservation decisions are based require careful consideration. As geographical range information becomes available for further sets of species, further testing will be warranted into the extent to which geographical variation in the richness of these six freshwater groups reflects broader patterns of biodiversity in fresh water.

BookDOI
23 May 2014
TL;DR: In this paper, Robin L. Chazdon reveals that these assumptions to be largely false, bringing to the fore the previously overlooked counterpart to old-growth forest: second growth.
Abstract: For decades, conservation and research initiatives in tropical forests have focused almost exclusively on old-growth forests because scientists believed that these pristiner ecosystems housed superior levels of biodiversity. With Second Growth, Robin L. Chazdon reveals those assumptions to be largely false, bringing to the fore the previously overlooked counterpart to old-growth forest: second growth. Even as human activities result in extensive fragmentation and deforestation, tropical forests demonstrate a great capacity for natural and human-aided regeneration. Although these damaged landscapes can take centuries to regain the characteristics of old growth, Chazdon shows here that regenerating or second-growth forests are vital, dynamic reservoirs of biodiversity and environmental services. What is more, they always have been. With chapters on the roles these forests play in carbon and nutrient cycling, sustaining biodiversity, providing timber and non-timber products, and integrated agriculture, Second Growth not only offers a thorough and wide-ranging overview of successional and restoration pathways, but also underscores the need to conserve, and further study, regenerating tropical forests in an attempt to inspire a new age of local and global stewardship.

Journal ArticleDOI
TL;DR: In this paper, a review examines climate change effects on groundwater and dependent ecosystems, focusing on the impacts of changes to groundwater on GDE biodiversity and future threats posed by climate change.

Journal ArticleDOI
TL;DR: In this article, the authors introduce a special issue on biodiversity of Palaearctic grasslands and provide a synthesis of the current knowledge on this topic and provide some promising conservation and management approaches and call for a strong and comprehensive Convention on Grassland Conservation.

Journal ArticleDOI
TL;DR: It is hypotheses that mobilization-based facilitative interactions may be an unsuspected, but potentially important mechanism enhancing productivity in both natural ecosystems and biodiversity experiments, and cases in which nutrient mobilization might be occurring in natural ecosystems.
Abstract: Despite increasing evidence that plant diversity in experimental systems may enhance ecosystem productivity, the mechanisms causing this overyielding remain debated. Here, we review studies of overyielding observed in agricultural intercropping systems, and show that a potentially important mechanism underlying such facilitation is the ability of some crop species to chemically mobilize otherwise-unavailable forms of one or more limiting soil nutrients such as phosphorus (P) and micronutrients (iron (Fe), zinc (Zn) and manganese (Mn)). Phosphorus-mobilizing crop species improve P nutrition for themselves and neighboring non-P-mobilizing species by releasing acid phosphatases, protons and/or carboxylates into the rhizosphere which increases the concentration of soluble inorganic P in soil. Similarly, on calcareous soils with a very low availability of Fe and Zn, Fe- and Zn-mobilizing species, such as graminaceous monocotyledonous and cluster-rooted species, benefit themselves, and also reduce Fe or Zn deficiency in neighboring species, by releasing chelating substances. Based on this review, we hypothesize that mobilization-based facilitative interactions may be an unsuspected, but potentially important mechanism enhancing productivity in both natural ecosystems and biodiversity experiments. We discuss cases in which nutrient mobilization might be occurring in natural ecosystems, and suggest that the nutrient mobilization hypothesis merits formal testing in natural ecosystems.

Journal ArticleDOI
TL;DR: It is shown that perennial bioenergy crops provide an alternative to annual grains that increases biodiversity of multiple taxa and sustain a variety of ecosystem functions, promoting the creation of multifunctional agricultural landscapes.
Abstract: Agriculture is being challenged to provide food, and increasingly fuel, for an expanding global population. Producing bioenergy crops on marginal lands—farmland suboptimal for food crops—could help meet energy goals while minimizing competition with food production. However, the ecological costs and benefits of growing bioenergy feedstocks—primarily annual grain crops—on marginal lands have been questioned. Here we show that perennial bioenergy crops provide an alternative to annual grains that increases biodiversity of multiple taxa and sustain a variety of ecosystem functions, promoting the creation of multifunctional agricultural landscapes. We found that switchgrass and prairie plantings harbored significantly greater plant, methanotrophic bacteria, arthropod, and bird diversity than maize. Although biomass production was greater in maize, all other ecosystem services, including methane consumption, pest suppression, pollination, and conservation of grassland birds, were higher in perennial grasslands. Moreover, we found that the linkage between biodiversity and ecosystem services is dependent not only on the choice of bioenergy crop but also on its location relative to other habitats, with local landscape context as important as crop choice in determining provision of some services. Our study suggests that bioenergy policy that supports coordinated land use can diversify agricultural landscapes and sustain multiple critical ecosystem services.

Journal ArticleDOI
TL;DR: This paper reviewed 276 published studies describing various effects of farmland abandonment on biodiversity and found that a study's geographic region, selected metrics, assessed taxa, and conservation focus significantly affected how those impacts were reported.
Abstract: Farmland abandonment is changing rural landscapes worldwide, but its impacts on biodiversity are still being debated in the scientific literature. While some researchers see it as a threat to biodiversity, others view it as an opportunity for habitat regeneration. We reviewed 276 published studies describing various effects of farmland abandonment on biodiversity and found that a study's geographic region, selected metrics, assessed taxa, and conservation focus significantly affected how those impacts were reported. Countries in Eurasia and the New World reported mainly negative and positive effects of farmland abandonment on biodiversity, respectively. Notably, contrasting impacts were recorded in different agricultural regions of the world that were otherwise similar in land-use and biodiversity characteristics. We showed that the conservation focus (pre- or post-abandonment) in different regions is an important factor influencing how scientists address the abandonment issue, and this may affect how lan...

Journal ArticleDOI
24 Apr 2014-Nature
TL;DR: This paper analyzed diversity-stability relationships from 41 grasslands on five continents and examined how these relationships are affected by chronic fertilization, one of the strongest drivers of species loss globally.
Abstract: Studies of experimental grassland communities have demonstrated that plant diversity can stabilize productivity through species asynchrony, in which decreases in the biomass of some species are compensated for by increases in others. However, it remains unknown whether these findings are relevant to natural ecosystems, especially those for which species diversity is threatened by anthropogenic global change. Here we analyse diversity-stability relationships from 41 grasslands on five continents and examine how these relationships are affected by chronic fertilization, one of the strongest drivers of species loss globally. Unmanipulated communities with more species had greater species asynchrony, resulting in more stable biomass production, generalizing a result from biodiversity experiments to real-world grasslands. However, fertilization weakened the positive effect of diversity on stability. Contrary to expectations, this was not due to species loss after eutrophication but rather to an increase in the temporal variation of productivity in combination with a decrease in species asynchrony in diverse communities. Our results demonstrate separate and synergistic effects of diversity and eutrophication on stability, emphasizing the need to understand how drivers of global change interactively affect the reliable provisioning of ecosystem services in real-world systems.

Journal ArticleDOI
TL;DR: In this paper, the authors reviewed empirical findings on the species richness in urban parks across all species groups that have been studied and discussed the overall species richness of urban parks, its community attributes and drivers.
Abstract: There is growing recognition of urban areas as hosts for innovative ways to conserve and promote biodiversity. Parks, as one specific type of urban green space, constitute particularly important biodiversity hotspots in the cityscape. We reviewed empirical findings on the species richness in urban parks across all species groups that have been studied. The aim was to assess and discuss the overall species richness of urban parks, its community attributes and drivers. Search and subsequent selection process resulted in 62 papers from 25 different countries. For all examined species groups, the findings consistently show that parks are among the most species rich types of urban green spaces, but also that exotics constitute large shares, especially of plant species. Key ecological theories like the gradient approach and the island habitat ecological theory, and fundamental ecological relationships such as the species-area relationship are valid despite the manipulated ‘nature’ of parks and the surrounding urban matrix. Most studies surveyed large number of parks and applied ‘multi-scale’ approaches in tests of confounding variables, providing methodological strength. While matrix effects are consistently found to affect species richness negatively, the diversity of habitats and microhabitat heterogeneity contained in urban parks appears as the most decisive factor for the overall species richness. However, a constraint of research to date is the limitation of individual studies to one or a few species groups, rarely bridging between flora and fauna. Adopting ‘multi-species group’ approaches in future research is needed to further advance the understanding of the overall biodiversity of urban parks, and its drivers.

Journal ArticleDOI
01 May 2014-Nature
TL;DR: Observational evidence for a widespread decline in forest greenness over the past decade is presented based on analyses of satellite data from several independent sensors over the Congo basin, suggesting a continued gradual decline of photosynthetic capacity and moisture content driven by the persistent drying trend could alter the composition and structure of the Congolese forest to favour the spread of drought-tolerant species.
Abstract: Tropical forests are global epicentres of biodiversity and important modulators of climate change, and are mainly constrained by rainfall patterns. The severe short-term droughts that occurred recently in Amazonia have drawn attention to the vulnerability of tropical forests to climatic disturbances. The central African rainforests, the second-largest on Earth, have experienced a long-term drying trend whose impacts on vegetation dynamics remain mostly unknown because in situ observations are very limited. The Congolese forest, with its drier conditions and higher percentage of semi-evergreen trees, may be more tolerant to short-term rainfall reduction than are wetter tropical forests, but for a long-term drought there may be critical thresholds of water availability below which higher-biomass, closed-canopy forests transition to more open, lower-biomass forests. Here we present observational evidence for a widespread decline in forest greenness over the past decade based on analyses of satellite data (optical, thermal, microwave and gravity) from several independent sensors over the Congo basin. This decline in vegetation greenness, particularly in the northern Congolese forest, is generally consistent with decreases in rainfall, terrestrial water storage, water content in aboveground woody and leaf biomass, and the canopy backscatter anomaly caused by changes in structure and moisture in upper forest layers. It is also consistent with increases in photosynthetically active radiation and land surface temperature. These multiple lines of evidence indicate that this large-scale vegetation browning, or loss of photosynthetic capacity, may be partially attributable to the long-term drying trend. Our results suggest that a continued gradual decline of photosynthetic capacity and moisture content driven by the persistent drying trend could alter the composition and structure of the Congolese forest to favour the spread of drought-tolerant species.

Journal ArticleDOI
12 Dec 2014-Science
TL;DR: Using historical records, the rate of extinction of bee and flower-visiting wasp species in Britain from the mid-19th century to the present is assessed, finding the most rapid phase of extinction appears to be related to changes in agricultural policy and practice beginning in the 1920s.
Abstract: Pollinators are fundamental to maintaining both biodiversity and agricultural productivity, but habitat destruction, loss of flower resources, and increased use of pesticides are causing declines in their abundance and diversity. Using historical records, we assessed the rate of extinction of bee and flower-visiting wasp species in Britain from the mid-19th century to the present. The most rapid phase of extinction appears to be related to changes in agricultural policy and practice beginning in the 1920s, before the agricultural intensification prompted by the Second World War, often cited as the most important driver of biodiversity loss in Britain. Slowing of the extinction rate from the 1960s onward may be due to prior loss of the most sensitive species and/or effective conservation programs.

Journal ArticleDOI
TL;DR: A meta-analysis of 78 studies using a systematic review protocol provides support for wider use of retention forestry since it moderates negative harvesting impacts on biodiversity, a promising approach for integrating biodiversity conservation and production forestry, although identifying optimal solutions between these two goals may need further attention.
Abstract: Summary 1. Industrial forestry typically leads to a simplified forest structure and altered species composition. Retention of trees at harvest was introduced about 25 years ago to mitigate negative impacts on biodiversity, mainly from clearcutting, and is now widely practiced in boreal and temperate regions. Despite numerous studies on response of flora and fauna to retention, no comprehensive review has summarized its effects on biodiversity in comparison to clearcuts as well as un-harvested forests. 2. Using a systematic review protocol, we completed a meta-analysis of 78 studies including 944 comparisons of biodiversity between retention cuts and either clearcuts or un-harvested forests, with the main objective of assessing whether retention forestry helps, at least in the short term, to moderate the negative effects of clearcutting on flora and fauna. 3. Retention cuts supported higher richness and a greater abundance of forest species than clearcuts as well as higher richness and abundance of open-habitat species than un-harvested forests. For all species taken together (i.e. forest species, open-habitat species, generalist species and unclassified species), richness was higher in retention cuts than in clearcuts. 4. Retention cuts had negative impacts on some species compared to un-harvested forest, indicating that certain forest-interior species may not survive in retention cuts. Similarly, retention cuts were less suitable for some open-habitat species compared with clearcuts. 5. Positive effects of retention cuts on richness of forest species increased with proportion of retained trees and time since harvest, but there were not enough data to analyse possible threshold effects, that is, levels at which effects on biodiversity diminish. Spatial arrangement of the trees (aggregated vs. dispersed) had no effect on either forest species or open-habitat species, although limited data may have hindered our capacity to identify responses. Results for different comparisons were largely consistent among taxonomic groups for forest and open-habitat species, respectively. 6. Synthesis and applications. Our meta-analysis provides support for wider use of retention forestry since it moderates negative harvesting impacts on biodiversity. Hence, it is a promising