Edit distance

Abstract: The string-to-string correction problem is to determine the distance between two strings as measured by the minimum cost sequence of “edit operations” needed to change the one string into the other. The edit operations investigated allow changing one symbol of a string into another single symbol, deleting one symbol from a string, or inserting a single symbol into a string. An algorithm is presented which solves this problem in time proportional to the product of the lengths of the two strings. Possible applications are to the problems of automatic spelling correction and determining the longest subsequence of characters common to two strings.

Abstract: We survey the current techniques to cope with the problem of string matching that allows errors. This is becoming a more and more relevant issue for many fast growing areas such as information retrieval and computational biology. We focus on online searching and mostly on edit distance, explaining the problem and its relevance, its statistical behavior, its history and current developments, and the central ideas of the algorithms and their complexities. We present a number of experiments to compare the performance of the different algorithms and show which are the best choices. We conclude with some directions for future work and open problems.

Abstract: Using an open-source, Java toolkit of name-matching methods, we experimentally compare string distance metrics on the task of matching entity names We investigate a number of different metrics proposed by different communities, including edit-distance metrics, fast heuristic string comparators, token-based distance metrics, and hybrid methods Overall, the best-performing method is a hybrid scheme combining a TFIDF weighting scheme, which is widely used in information retrieval, with the Jaro-Winkler string-distance scheme, which was developed in the probabilistic record linkage community

Abstract: We provide formal definitions and efficient secure techniques for turning noisy information into keys usable for any cryptographic application, and, in particular, reliably and securely authenticating biometric data. Our techniques apply not just to biometric information, but to any keying material that, unlike traditional cryptographic keys, is (1) not reproducible precisely and (2) not distributed uniformly. We propose two primitives: a fuzzy extractor reliably extracts nearly uniform randomness $R$ from its input; the extraction is error-tolerant in the sense that $R$ will be the same even if the input changes, as long as it remains reasonably close to the original. Thus, $R$ can be used as a key in a cryptographic application. A secure sketch produces public information about its input $w$ that does not reveal $w$ and yet allows exact recovery of $w$ given another value that is close to $w$. Thus, it can be used to reliably reproduce error-prone biometric inputs without incurring the security risk inherent in storing them. We define the primitives to be both formally secure and versatile, generalizing much prior work. In addition, we provide nearly optimal constructions of both primitives for various measures of “closeness” of input data, such as Hamming distance, edit distance, and set difference.

Abstract: An important consideration in similarity-based retrieval of moving object trajectories is the definition of a distance function. The existing distance functions are usually sensitive to noise, shifts and scaling of data that commonly occur due to sensor failures, errors in detection techniques, disturbance signals, and different sampling rates. Cleaning data to eliminate these is not always possible. In this paper, we introduce a novel distance function, Edit Distance on Real sequence (EDR) which is robust against these data imperfections. Analysis and comparison of EDR with other popular distance functions, such as Euclidean distance, Dynamic Time Warping (DTW), Edit distance with Real Penalty (ERP), and Longest Common Subsequences (LCSS), indicate that EDR is more robust than Euclidean distance, DTW and ERP, and it is on average 50% more accurate than LCSS. We also develop three pruning techniques to improve the retrieval efficiency of EDR and show that these techniques can be combined effectively in a search, increasing the pruning power significantly. The experimental results confirm the superior efficiency of the combined methods.