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Showing papers on "Genus published in 2017"


Book
01 Nov 2017

1,943 citations


Journal ArticleDOI
TL;DR: Type and reference strains of members of the onygenalean family Arthrodermataceae have been sequenced for rDNA ITS and partial LSU, and fragments of β-tubulin and translation elongation factor 3 showed Trichophyton to be polyphyletic.
Abstract: Type and reference strains of members of the onygenalean family Arthrodermataceae have been sequenced for rDNA ITS and partial LSU, the ribosomal 60S protein, and fragments of β-tubulin and translation elongation factor 3. The resulting phylogenetic trees showed a large degree of correspondence, and topologies matched those of earlier published phylogenies demonstrating that the phylogenetic representation of dermatophytes and dermatophyte-like fungi has reached an acceptable level of stability. All trees showed Trichophyton to be polyphyletic. In the present paper, Trichophyton is restricted to mainly the derived clade, resulting in classification of nearly all anthropophilic dermatophytes in Trichophyton and Epidermophyton, along with some zoophilic species that regularly infect humans. Microsporum is restricted to some species around M. canis, while the geophilic species and zoophilic species that are more remote from the human sphere are divided over Arthroderma, Lophophyton and Nannizzia. A new genus Guarromyces is proposed for Keratinomyces ceretanicus. Thirteen new combinations are proposed; in an overview of all described species it is noted that the largest number of novelties was introduced during the decades 1920-1940, when morphological characters were used in addition to clinical features. Species are neo- or epi-typified where necessary, which was the case in Arthroderma curreyi, Epidermophyton floccosum, Lophophyton gallinae, Trichophyton equinum, T. mentagrophytes, T. quinckeanum, T. schoenleinii, T. soudanense, and T. verrucosum. In the newly proposed taxonomy, Trichophyton contains 16 species, Epidermophyton one species, Nannizzia 9 species, Microsporum 3 species, Lophophyton 1 species, Arthroderma 21 species and Ctenomyces 1 species, but more detailed studies remain needed to establish species borderlines. Each species now has a single valid name. Two new genera are introduced: Guarromyces and Paraphyton. The number of genera has increased, but species that are relevant to routine diagnostics now belong to smaller groups, which enhances their identification.

407 citations


Journal ArticleDOI
Washington University in St. Louis1, National Institutes of Health2, Georgia State University3, United States Army Medical Research Institute of Infectious Diseases4, Friedrich Loeffler Institute5, Commonwealth Scientific and Industrial Research Organisation6, Columbia University7, University of Texas Medical Branch8, Colorado State University9, Yeshiva University10, University of Queensland11, University of Marburg12, University of Warwick13, Mayo Clinic14, Zhejiang University15, World Health Organization16, Erasmus University Rotterdam17, New York University18, Queensland University of Technology19, Public Health England20, Auckland University of Technology21, Kyoto University22, Huazhong Agricultural University23, Laval University24, Okayama University25, United States Geological Survey26, Northwestern University27, Icahn School of Medicine at Mount Sinai28, Boston University29, Novosibirsk State University30, University of Medicine and Health Sciences31, University of Veterinary Medicine Vienna32, Texas Biomedical Research Institute33, Texas A&M University34, University of Auckland35, University of St Andrews36, University of Melbourne37, Queen's University Belfast38, Centers for Disease Control and Prevention39, University of Freiburg40, Defence Science and Technology Laboratory41, University of Missouri42, Hokkaido University43, Pasteur Institute44, Claude Bernard University Lyon 145, National University of Singapore46, University of Rochester47, Kansas State University48
TL;DR: The updated taxonomy of the order Mononegavirales is presented, with non-Latinized binomial species names replaced all paramyxovirus and pneumovirus species names, thereby accomplishing application of binomial Species names throughout the entire order.
Abstract: In 2017, the order Mononegavirales was expanded by the inclusion of a total of 69 novel species. Five new rhabdovirus genera and one new nyamivirus genus were established to harbor 41 of these species, whereas the remaining new species were assigned to already established genera. Furthermore, non-Latinized binomial species names replaced all paramyxovirus and pneumovirus species names, thereby accomplishing application of binomial species names throughout the entire order. This article presents the updated taxonomy of the order Mononegavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV).

222 citations


Book
19 Apr 2017
TL;DR: The Neotropical caddisfly (Trichoptera) fauna is cataloged from a review of over 1,000 literature citations through 2015 to include 3,262 currently recognized, valid species-group names in 25 families and 155 extant genera.
Abstract: The Neotropical caddisfly (Trichoptera) fauna is cataloged from a review of over 1,000 literature citations through 2015 (partial 2016) to include 3,262 currently recognized, valid species-group names in 25 families and 155 extant genera. Fourteen subspecies are included in the total as well as 35 fossil species and 1 fossil genus. The region covered includes all of Mexico, Central America, the Caribbean, and South America. Genus-group and species-group synonyms are listed. For each nominal species, information on the type locality, type depository, sex of type, distribution by country, and other pertinent taxonomic or biological information is included. Summary information on taxonomy, phylogeny, distribution, immature stages, and biology are provided for each family and genus where known. An extensive index to all nominal taxa is included to facilitate use of the catalog. The glossosomatid species Mexitrichia usseglioi Rueda Martin & Gibon, is transferred to Mortoniellacomb. n.

117 citations


MonographDOI
28 Aug 2017
TL;DR: A comprehensive work covering the about 100,000 species of Coleoptera known to occur in the Palaearctic Region, the complete work is planned for 8 volumes that will be published in intervals of about 18 months.
Abstract: A comprehensive work covering the about 100,000 species of Coleoptera known to occur in the Palaearctic Region. The complete work is planned for 8 volumes that will be published in intervals of about 18 months. The information provided for each species will be the following: * Primary taxonomic information of all available names in the genus and species levels published by the end of 1999. * The taxonomic information below subfamily will be organized alphabetically. * The type species of genera and subgenera, incl. synonyms, are given. * The area covered also includes the Arabian Peninsula, Himalayas and China. * The distributional data of species and subspecies is given per country. * Detailed distributional information for strict endemics is given. * Introduced species are indicated. The catalogue is a collective work of about one hundred coleopterists from Europe, Japan, America and Australia. A revised edition of this work will be published in October 2017.

115 citations


Journal ArticleDOI
TL;DR: A new family, Pseudocoleodictyosporaceae is introduced based on its distinct lineage in the Dothideomycetes and its unique morphology as compared to Roussoellaceae and Torulaceae, and three species of uncertain taxonomic placement were identified.
Abstract: To date there is virtually no information available concerning the fungi associated with Tectona grandis (teak) (Lamiaceae) in Thailand. In this study, samples of microfungi were collected from both asymptomatic stems and dead wood, and symptomatic branches, stem and leaves of T. grandis from 27 sites in six provinces (Chiang Mai, Chiang Rai, Phayao, Phitsanulok, Phrae and Uttaradit Provinces). Morphology and combined multi-gene phylogeny (CAL, GAPDH, ITS, LSU, RPB2, SSU, TEF1 and TUB) were used to identify taxa. A total of 270 collections, representing 28 fungal species residing in 12 families, 7 orders and 21 genera, with three species of uncertain taxonomic placement were identified. Of these, one family, three genera and 14 species are new to science. The new family, Pseudocoleodictyosporaceae is introduced based on its distinct lineage in the Dothideomycetes and its unique morphology as compared to Roussoellaceae and Torulaceae. The new genera are Neooccultibambusa, Pseudocoleodictyospora and Subglobosporium. The newly described species are Diaporthe neoraonikayaporum, D. tectonendophytica, D. tectonae, D. tectonigena, Hermatomyces tectonae, H. thailandica, Manoharachariella tectonae, Neooccultibambusa chiangraiensis, Pseudocoleodictyospora sukhothaiensis, Ps. tectonae, Ps. thailandica, Rhytidhysteron tectonae, Subglobosporium tectonae and Tubeufia tectonae. Fourteen species are known published taxa including Alternaria tillandsiae, Berkleasmium talaumae, Boerlagiomyces macrospora, Ceratocladium purpureogriseum, Fusarium solani, Helicoma siamense, Lasiodiplodia theobromae, Macrovalsaria megalospora, Paradictyoarthrinium diffractum, Phaeoacremonium italicum, Sphaeropsis eucalypticola, Stachybotrys levispora, St. renispora and Thaxteriellopsis lignicola. Epitypifications or reference specimens are designated for Boerlagiomyces macrospora and Macrovalsaria megalospora. Macrovalsaria megalospora is transferred from Botryosphaeriaceae to Dothideomycetes genus, incertae sedis based on taxonomy and phylogenetic analysis, which indicate it is distinct from Botryosphaeriaceae. All fungal species represent first reports on T. grandis in Thailand. New taxa and taxa incertae sedis, as well as known taxa which are established as reference specimens or epitypes, are presented with phylogenetic tree analyses, habitat, known distribution, material examined, full descriptions, notes and figures. Information is also provided for known taxa to add to the body of knowledge and to assist those wishing to study fungi occurring on T. grandis in future.

106 citations


Journal ArticleDOI
01 Oct 2017
TL;DR: A revised list of freshwater mussels of the United States and Canada, incorporating changes in nomenclature and systematic taxonomy since publication of the most recent checklist in 1998 is presented.
Abstract: We present a revised list of freshwater mussels (order Unionida, families Margaritiferidae and Unionidae) of the United States and Canada, incorporating changes in nomenclature and systematic taxonomy since publication of the most recent checklist in 1998. We recognize a total of 298 species in 55 genera in the families Margaritiferidae (one genus, five species) and Unionidae (54 genera, 293 species). We propose one change in the Margaritiferidae: the placement of the formerly monotypic genus Cumberlandia in the synonymy of Margaritifera. In the Unionidae, we recognize three new genera, elevate four genera from synonymy, and place three previously recognized genera in synonymy. We recognize for the first time two species (one native and one nonindigenous) in the Asian genus Sinanodonta as occurring in North America. We recognize four new species and one subspecies and elevate 21 species from synonymy. We elevate 10 subspecies to species status and no longer recognize four subspecies. We change common names for five taxa, correct spelling for eight species, and correct the date of publication of original descriptions for four species.

106 citations


Journal ArticleDOI
TL;DR: A recently developed temporal approach that uses time-calibrated chronograms to identify temporal bands for specific ranks in Parmeliaceae and allied groups with the overarching goal of establishing a consistent, stable classification is used.
Abstract: Although classification at supra-specific ranks is inherently arbitrary, comparable taxonomic ranks within clades can facilitate more consistent classifications and objective comparisons among taxa. Different circumscriptions of the hyper-diverse lichen-forming fungal family Parmeliaceae and widely different generic circumscriptions among authors have been proposed. For this study, we use a recently developed temporal approach that uses time-calibrated chronograms to identify temporal bands for specific ranks in Parmeliaceae and allied groups with the overarching goal of establishing a consistent, stable classification. A data set of 330 species, representing 73 genera in the family and 52 species of related families was used to address the circumscription of Parmeliaceae and its genera following the proposed temporal approach. Based on the results of this study, we propose a revised, temporal-based classification for Parmeliaceae, including all clades that share a common ancestor 102.13–112.88 Ma for families and a time window of 29.45–32.55 Ma for genera. Forty-five of the currently accepted genera in Parmeliaceae were supported in their current circumscription. Two subfamilies are accepted within Parmeliaceae: Protoparmelioideae Divakar et al. subfam. nov., including Protoparmelia and the resurrected genus Maronina, and Parmelioideae, including the bulk of genera in the family. The new genus Austromelanelixia Divakar et al. is proposed to accommodate a clade of southern Hemisphere species previously included in Melanelixia. Eumitria and tentatively Dolichousnea are resurrected as genera separate from Usnea. The following genera are reduced to synonymy: Allocetraria, Cetrariella, Usnocetraria, and Vulpicida with Cetraria; Arctocetraria, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Tuckermanella, and Tuckermannopsis with Nephromopsis; and the lichenicolous genera Nesolechia and Raesaenenia with the lichen-forming genera Punctelia and Protousnea, respectively. A total of 47 new combinations and three new names at the species level are proposed.

77 citations


Journal ArticleDOI
TL;DR: The aim of this study was the identification of well-supported clades that provide the basis for evolutionary and taxonomic conclusions and the combination of different data sets allows a comprehensive reconstruction of taxa and characteristic evolution, both of which are a precondition for future revision.

73 citations


Journal ArticleDOI
TL;DR: The present phylogenetic analyses as well as several former studies show that the myrtle rust Puccinia psidii does not belong to the genus PuCCinia and appears outside of the family Pucciniales, and is, however, closely related to the genera Dasyspora, Puccorchidium, Sphen orchidium and Sphaerophragmium.
Abstract: The myrtle rust Puccinia psidii originates from South America but is nowadays a very important and invasive pathogen on several genera of Myrtaceae outside of its native area, and especially in Australia, a biodiversity hotspot of Myrtaceae. To date, the taxonomic position of P. psidii has been unclear. The present phylogenetic analyses as well as several former studies show that it does not belong to the genus Puccinia and appears outside of the family Pucciniales. It is, however, closely related to the genera Dasyspora , Puccorchidium, Sphenorchidium and Sphaerophragmium . Consequently, the new genus Austropuccinia has been erected and placed in the newly circumscribed family Sphaerophragmiaceae.

73 citations



Journal ArticleDOI
TL;DR: The fungal phylogeny confirms that Sericomyrmex fungi are generalized higher‐attine cultivars, interspersed with Trachymyrmex‐associated fungal species, indicating cultivar sharing and horizontal transfer between these two genera.
Abstract: Ants in the Neotropical genus Sericomyrmex Mayr cultivate fungi for food. Both ants and fungi are obligate, coevolved symbionts. The taxonomy of Sericomyrmex is problematic because the morphology of the worker caste is generally homogeneous across all of the species within the genus, species limits are vague, and the relationships between them are unknown. We used ultraconserved elements (UCEs) as genome-scale markers to reconstruct evolutionary history and to infer species boundaries in Sericomyrmex. We recovered an average of ∼990 UCE loci for 88 Sericomyrmex samples from across the geographical range of the genus as well as for five outgroup taxa. Using maximum likelihood and species-tree approaches, we recovered nearly identical topologies across datasets with 50–95% matrix completeness. We identify nine species-level lineages in Sericomyrmex, including two new species. This is less than the previously described 19 species, even accounting for two species for which we had no UCE samples, which brings the total number of Sericomyrmex species to 11. Divergence-dating analyses recovered 4.3 Ma as the crown-group age estimates for Sericomyrmex, indicating a recent, rapid radiation. We also sequenced mitochondrial cytochrome oxidase subunit I (COI) for 125 specimens. Resolution and support for clades in our COI phylogeny are weak, indicating that COI is not an appropriate species-delimitation tool. However, taxa within species consistently cluster together, suggesting that COI is useful as a species identification (‘DNA barcoding’) tool. We also sequenced internal transcribed spacer (ITS) and large subunit (LSU) for 32 Sericomyrmex fungal cultivars. The fungal phylogeny confirms that Sericomyrmex fungi are generalized higher-attine cultivars, interspersed with Trachymyrmex-associated fungal species, indicating cultivar sharing and horizontal transfer between these two genera. Our results indicate that UCEs offer immense potential for delimiting and resolving relationships of problematic, recently diverged species.

Journal ArticleDOI
TL;DR: This work used ddRADseq data from all of the described and potentially undescribed taxa of Xenosaurus to investigate species limits, and reconstructed a well-resolved and generally well-supported phylogeny for this group of knob-scaled lizards.

Journal ArticleDOI
TL;DR: A phylogenetic β-tubulin tree in conjunction with stromatal HPLC profiles clearly shows that Annulohypoxylon comprises two distinct lineages, and the A. cohaerens/multiforme group might eventually warrant segregation into a new genus as further molecular data become available.
Abstract: This study deals with an extensive evaluation focusing on phylogenetic and chemotaxonomic infrageneric relationships of the genus Annulohypoxylon (Xylariaceae, Ascomycota), whose species are ubiquitously associated with seed plants as endophytes and saprotrophs in all forested areas of the world. Using evidence from phylogenetic, chemotaxonomic and morphological data, various varieties within the genus are raised to species level, leading to the new combinations for A. areolatum (≡ A. bovei var. microsporum), A. macrosporum (≡ A. leptascum var. macrosporum), and A. microdiscum (≡ A. moriforme var. microdiscum). Annulohypoxylon substygium nom. nov. is applied for A. stygium var. annulatum and the four new tropical and subtropical species A. massivum, A. violaceopigmentum, A. viridistratum and A. yungensis are introduced. Furthermore, A. leucadendri is excluded from the genus as its morphological characters disagree with the generic concept, the recently erected A. palmicola is synonymized with A. leptascum and A. austrobahiense has been reassigned to the genus Hypoxylon. In addition, the key taxa A. annulatum and A. truncatum have been reinvestigated and epitypes have been defined. For the first time, a dichotomous key to the genus is provided. A phylogenetic β-tubulin tree in conjunction with stromatal HPLC profiles clearly shows that Annulohypoxylon comprises two distinct lineages. The A. cohaerens/multiforme group might eventually warrant segregation into a new genus as further molecular data become available.

Book
11 Dec 2017
TL;DR: "A contribution from the Department of Botany, University of Illinois."
Abstract: "A contribution from the Department of Botany, University of Illinois. Distributed: December 15, 1959."

Journal ArticleDOI
TL;DR: The phylogenetic placement of Aliinostoc along with some other related sequences of Nostoc clearly separated this clade from Nostoc sensu stricto with high bootstrap support and robust topology in all the methods tested, thus providing strong proof of the taxa being representative of a new genus which morphologically appears to be Nostoc-like.
Abstract: Nostoc is a complex and tough genus to differentiate, and its morphological plasticity makes it taxonomically complicated. Its cryptic diversity and almost no distinguishable morphological characteristics make this genus incredibly heterogeneous to evaluate on taxonomic scales. The strain NOS, isolated from a eutrophic water body, is being described as a new genus Aliinostoc with the strain showing motile hormogonia with gas vesicles as an atypical feature, which is currently considered as the diacritical feature of the genus but should be subjected to critical evaluation in the near future. The phylogenetic placement of Aliinostoc along with some other related sequences of Nostoc clearly separated this clade from Nostoc sensu stricto with high bootstrap support and robust topology in all the methods tested, thus providing strong proof of the taxa being representative of a new genus which morphologically appears to be Nostoc-like. Subsequent phylogenetic assessment using the rbcL, psbA, rpoC1 and tufA genes was done with the aim of facilitating future multi-locus studies on the proposed genus for better taxonomic clarity and resolution. Folding of the 16S-23S internal transcribed spacer region and subsequent comparisons with members of the genera Nostoc, Anabaena, Aulosira, Cylindrospermum, Sphaerospermopsis, Raphidiopsis, Desmonostoc and Mojavia gave entirely new secondary structures for the D1-D1' and box-B helix. Clear and separate clustering from Nostoc sensu stricto supports the establishment of Aliinostoc gen. nov. with the type species being Aliinostoc morphoplasticum sp. nov. in accordance with the International Code of Nomenclature for algae, fungi and plants.

Journal ArticleDOI
TL;DR: Pistacia genus is a trove of phenolic compounds, terpenoids, monoterpenes, flavonoids, alkaloids, saponins, fatty acids, and sterols, which has garnered pharmaceutical attention in recent times.

Journal ArticleDOI
TL;DR: Seven strains from the Portuguese foreshore were extensively characterized and their classification was re-evaluated, leading to the proposal of five new taxa, three genera (Geminobacterium, Lusitaniella, and Calenema) and two species (Hyella patelloides and Jaaginema litorale).

Journal ArticleDOI
01 Nov 2017-Protist
TL;DR: The authors performed a detailed analysis of variations in morphology, pigment content, and sequences of the nuclear-encoded small-subunit rRNA gene and the second internal transcribed spacer (ITS2) from strains isolated worldwide.

Journal ArticleDOI
TL;DR: The genus Photobacterium, one of the eight genera included in the family Vibrionaceae, contains 27 species with valid names and has received attention because of the bioluminescence and pathogenesis mechanisms that some of its species exhibit.
Abstract: The genus Photobacterium, one of the eight genera included in the family Vibrionaceae, contains 27 species with valid names and it has received attention because of the bioluminescence and pathogenesis mechanisms that some of its species exhibit. However, the taxonomy and phylogeny of this genus are not completely elucidated; for example, P. logei and P. fischeri are now considered members of the genus Aliivibrio, and previously were included in the genus Vibrio. In addition, P. damselae subsp. piscicida was formed as a new combination for former Vibrio damsela and Pasteurella piscicida. Moreover, P. damselae subsp. damselae is an earlier heterotypic synonym of P. histaminum. To avoid these incovenences draft and complete genomic sequences of members of Photobacterium are increasingly becoming available and their use is now routine for many research laboratories to address diverse goals: species delineation with overall genomic indexes, phylogenetic analyses, comparative genomics, and phenotypic inference. The habitats and isolation source of the Photobacterium species include seawater, sea sediments, saline lake waters, and a variety of marine organisms with which the photobacteria establish different relationships, from symbiosis to pathogenic interactions. Several species of this genus contain bioluminescent strains in symbiosis with marine fish and cephalopods; in addition, other species enhance its growth at pressures above 1 atmosphere, by means of several high-pressure adaptation mechanisms and for this, they may be considered as piezophilic (former barophilic) bacteria. Until now, only P. jeanii, P. rosenbergii, P. sanctipauli, and the two subspecies of P. damselae have been reported as responsible agents of several pathologies on animal hosts, such as corals, sponges, fish and homeothermic animals. In this review we have revised and updated the taxonomy, ecology and pathogenicity of several members of this genus. [Int Microbiol 20(1): 1-10 (2017)].

Journal ArticleDOI
TL;DR: An exploratory mapping of larval host‐use traits on the phylogeny shows strong conservation of modes of leaf mining but much higher lability of associations with host plant orders and families, suggesting that host shifts could play a significant role in gracillariid diversification.
Abstract: Gracillariidae are one of the most diverse families of internally feeding insects, and many species are economically important. Study of this family has been hampered by lack of a robust and comprehensive phylogeny. In the present paper, we sequenced up to 22 genes in 96 gracillariid species, representing all previously recognized subfamilies and genus groups, plus 20 outgroups representing other families and superfamilies. Following objective identification and removal of two rogue taxa, two datasets were constructed: dataset 1, which included 12 loci totalling 9927 bp for 94 taxa, and dataset 2, which supplemented dataset 1 with 10 additional loci for 10 taxa, for a total of 22 loci and 16 167 bp. Maximum likelihood analyses strongly supported the monophyly of Gracillariidae and most previously recognized subfamilies and genus groups. On this basis, we propose a new classification consisting of eight subfamilies, four of which are newly recognized or resurrected: Acrocercopinae Kawahara & Ohshima subfam. n.; Gracillariinae Stainton; Lithocolletinae Stainton; Marmarinae Kawahara & Ohshima subfam. n.; Oecophyllembiinae Real & Balachowsky; Parornichinae Kawahara & Ohshima subfam. n.; Ornixolinae Kuznetzov & Baryshnikova stat. rev.; and Phyllocnistinae Zeller. The subfamily Gracillariinae is restricted to the monophyletic group comprising Gracillaria Haworth and closely related genera. We also formally transfer Acrocercops scriptulata Meyrick to Ornixolinae and use the name Diphtheroptila Vari, creating Diphtheroptila scriptulata comb. n. An exploratory mapping of larval host-use traits on the phylogeny shows strong conservation of modes of leaf mining but much higher lability of associations with host plant orders and families, suggesting that host shifts could play a significant role in gracillariid diversification. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:942814A2-DE66-41D4-8AB6-FF0B18C87EDB.

Journal ArticleDOI
TL;DR: Two new genera Neomicrosphaeropsis (Didymellaceae) and Tamaricicola (Pleosporaceae) are introduced and a comprehensive account of microfungi on Tamarix is provided, which includes a list with data from the literature, as well as those identified in the present study.
Abstract: Tamarix species are small trees that grow in various natural habitats and have a wide geographic distribution. Microfungal species previously found on Tamarix and recently collected in Italy and Russia were identified based on morphological characters and analyses of gene sequence data. The sexual morph of the coelomycetous genus Homortomyces was collected for the first time and is described and illustrated. A new family, Homortomycetaceae (Dothideomycetes, families incertae sedis) is introduced to accommodate Homortomyces. Two new genera Neomicrosphaeropsis (Didymellaceae) and Tamaricicola (Pleosporaceae) are introduced in this paper. Phoma tamaricicola was recollected and is placed in Neomicrosphaeropsis based on morphology and molecular data. Ten new species, Cytospora italica, C. unilocularis, Diaporthe ravennica, Eutypella tamaricis, Neomicrosphaeropsis italica, N. novorossica, N. rossica, Keissleriella tamaricicola, Paracamarosporium tamaricis and Tamaricicola muriformis are introduced, while Alternaria tenuissima, Dothiorella sarmentorum, Neofusicoccum luteum, Paraepicoccum amazonense, Pleospora herbarum and Pseudocamarosporium propinquum are reported for the first time on Tamarix spp. with descriptions and illustrations. Multi-gene analyses show that Paraepicoccum amazonense should be placed in Pleosporineae, Pleosporales, where it is closely related to Camarosporium sensu stricto. Several herbarium specimens were studied to illustrate other fungal species recorded on Tamarix species. A comprehensive account of microfungi on Tamarix is provided, which includes a list with data from the literature, as well as those identified in the present study. The taxonomic placement of most taxa discussed in this study is based on a modern taxonomic framework based on analysis of multi-gene sequence data.

Journal ArticleDOI
TL;DR: Two speciose genera are recognized: Vertebrata and Melanothamnus, both of which are distinguished from other members of the Polysiphonieae by synapomorphic characters, the emergence of which could have provided evolutionarily selective advantages for these two lineages.
Abstract: Polysiphonia is the largest genus of red algae, and several schemes subdividing it into smaller taxa have been proposed since its original description. Most of these proposals were not generally accepted, and currently the tribe Polysiphonieae consists of the large genus Polysiphonia (190 species), the segregate genus Neosiphonia (43 species) and 13 smaller genera (< 10 species each). In this paper, phylogenetic relationships of the tribe Polysiphonieae are analysed, with particular emphasis on the genera Carradoriella, Fernandosiphonia, Melanothamnus, Neosiphonia, Polysiphonia sensu stricto, Streblocladia and Vertebrata. We evaluated the consistency of 14 selected morphological characters in the identified clades. Based on molecular phylogenetic (rbcL and 18S genes) and morphological evidence, two speciose genera are recognized: Vertebrata (including the type species of the genera Ctenosiphonia, Enelittosiphonia, Boergeseniella and Brongniartella) and Melanothamnus (including the type species of ...

Journal ArticleDOI
TL;DR: The molecular clock analysis and ancestral range estimation suggest the most recent common ancestor to the armillarioid lineage arose 51 million years ago in Eurasia, a time marked by a warm and wet global climate.
Abstract: Armillaria is a globally distributed mushroom-forming genus composed primarily of plant pathogens. Species in this genus are prolific producers of rhizomorphs, or vegetative structures, which, when found, are often associated with infection. Because of their importance as plant pathogens, understanding the evolutionary origins of this genus and how it gained a worldwide distribution is of interest. The first gasteroid fungus with close affinities to Armillaria—Guyanagaster necrorhizus—was described from the Neotropical rainforests of Guyana. In this study, we conducted phylogenetic analyses to fully resolve the relationship of G. necrorhizus with Armillaria. Data sets containing Guyanagaster from two collecting localities, along with a global sampling of 21 Armillaria species—including newly collected specimens from Guyana and Africa—at six loci (28S, EF1α, RPB2, TUB, actin-1 and gpd) were used. Three loci—28S, EF1α and RPB2—were analyzed in a partitioned nucleotide data set to infer divergence dates and ancestral range estimations for well-supported, monophyletic lineages. The six-locus phylogenetic analysis resolves Guyanagaster as the earliest diverging lineage in the armillarioid clade. The next lineage to diverge is that composed of species in Armillaria subgenus Desarmillaria. This subgenus is elevated to genus level to accommodate the exannulate mushroom-forming armillarioid species. The final lineage to diverge is that composed of annulate mushroom-forming armillarioid species, in what is now Armillaria sensu stricto. The molecular clock analysis and ancestral range estimation suggest the most recent common ancestor to the armillarioid lineage arose 51 million years ago in Eurasia. A new species, Guyanagaster lucianii sp. nov. from Guyana, is described. The armillarioid lineage evolved in Eurasia during the height of tropical rainforest expansion about 51 million years ago, a time marked by a warm and wet global climate. Species of Guyanagaster and Desarmillaria represent extant taxa of these early diverging lineages. Desarmillaria represents an armillarioid lineage that was likely much more widespread in the past. Guyanagaster likely evolved from a gilled mushroom ancestor and could represent a highly specialized endemic in the Guiana Shield. Armillaria species represent those that evolved after the shift in climate from warm and tropical to cool and arid during the late Eocene. No species in either Desarmillaria or Guyanagaster are known to produce melanized rhizomorphs in nature, whereas almost all Armillaria species are known to produce them. The production of rhizomorphs is an adaptation to harsh environments, and could be a driver of diversification in Armillaria by conferring a competitive advantage to the species that produce them.

Journal ArticleDOI
TL;DR: This study reconstructed a multi-gene phylogeny of the Penetrans group using nuclear ribosomal and mitochondrial gene sequences and reveals a remarkable amount of cryptic biodiversity within the genus Pratylenchus confirming that identification on morphology alone can be inconclusive in this taxonomically confusing genus.

Journal ArticleDOI
TL;DR: It is shown that water mites of the genus Hygrobates belong to six distinct lineages, two of them widely distributed in Central Europe and a species new to science, H. arenarius Smit & Pešić, which should be considered true cryptic species.
Abstract: Water mites of the genus Hygrobates are widely distributed in all biogeographic regions except the Antarctic. Palaearctic Hygrobates species with reticulated soft integument generally have been considered as representatives of one common and widely distributed species, Hygrobates fluviatilis Strom, 1768. Based on partial COI sequences (DNA-barcodes) and statistical analysis of morphological data, we show that these mites belong to six distinct lineages. Two of them are widely distributed in Central Europe: Hygrobates fluviatilis here redescribed based on a neotype designated from the type locality in Norway, and a species new to science, H. arenarius Smit & Pesic. The four remaining lineages represent additional species new to science that appear to have more restricted distributions: H. corsicus Pesic & Smit (Corsica, Sardinia), H. marezaensis Pesic & Dabert (Montenegro, Albania, Croatia), H. turcicus Pesic, Esen & Dabert (Turkey), and H. persicus Pesic & Asadi (Iran, E Turkey). Statistical morphometric analysis reveals that the latter two species cannot be separated on morphological characters and should be considered true cryptic species. We provide data concerning biology and geographical distributions together with a key to all species of the complex.


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TL;DR: A new genus of stingless bees (Apinae: Meliponini) is described and figured from Indonesia (Sulawesi), known from a single species previously placed in Geniotrigona Moure, but Wallacetrigona is presently not known beyond the Weber Line.
Abstract: A new genus of stingless bees (Apinae: Meliponini) is described and figured from Indonesia (Sulawesi), known from a single species previously placed in Geniotrigona Moure. Based on recent phylogenetic studies, Trigona (Geniotrigona) incisa Sakagami and Inoue renders Geniotrigona polyphyletic and is more closely related to Lepidotrigona Moure. The species is transferred to Wallacetrigona Engel and Rasmussen, new genus, and differentiated from Geniotrigona proper as well as all other meliponines occurring in Sundaland, Wallacea, and Sahul (Australinea). The new genus occurs east of the Wallace Line and separate from the distribution of Geniotrigona, which is otherwise restricted to Sundaland, but Wallacetrigona is presently not known beyond the Weber Line. A hierarchical classification of Indomalayan and Australasian stingless bees is tabulated and a revised key to the genera and subgenera provided, as well as an appendix tabulating the species and synonyms. The following new combinations are established: Wallacetrigona incisa (Sakagami and Inoue), Homotrigona (Lophotrigona) canifrons (Smith), Homotrigona (Odontotrigona) haematoptera (Cockerell), Homotrigona (Tetrigona) apicalis (Smith), H. (T.) binghami (Schwarz), H. (T.) melanoleuca (Cockerell), H. (T.) peninsularis (Cockerell), and H. (T.) vidua (Lepeletier de Saint Fargeau).


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TL;DR: Phylogenetic analyses revealed Encoelia and Encoelioideae to be highly polyphyletic, with species distributed among eight major lineages and inclusion of en coelioid genera in Chaetomellaceae and Sclerotiniaceae added xylicolous saprotrophs to these families.
Abstract: This study focuses on the genus Encoelia and the subfamily Encoelioideae in the morphologically and ecologically diverse Helotiales. The 28S and 18S rDNA as well as tef1, rpb1 and rpb2 were sequenced for 70 species. Phylogenetic analyses revealed Encoelia and Encoelioideae to be highly polyphyletic, with species distributed among eight major lineages. Encoelia fascicularis and E. pruinosa belonged to Sclerotiniaceae and were combined in a new genus, Sclerencoelia. Rutstroemiaceae comprised E. tiliacea and Dencoeliopsis johnstonii, both accepted in Rutstroemia. The type of Encoelia, E. furfuracea, was closely related to species of Velutarina, Cenangiopsis and Crumenulopsis. These species together with members of Hemiphacidiaceae formed a clade conforming to the emended concept of Cenangiaceae, introduced here. Another resurrected family, Cordieritidaceae, comprised E. fimbriata, E. heteromera and species of Ameghiniella, Cordierites, Diplocarpa and Ionomidotis, characterised by inamyloid asci and a positive ionomidotic reaction. Encoelia glauca showed closest affinities with Chlorociboria species in Chlorociboriaceae. A new genus, Xeropilidium, with sporodochial and pycnidial synanamorphs, was described for the distinct encoelioid member of the Chaetomellaceae, previously known as E. fuckelii. Morphological and ecological synapomorphies were distinguished from convergent characters to delimit monophyletic taxa including encoelioid fungi. Incorporation of public sequences from various biological samples in ITS rDNA analyses allowed identification of sequenced organisms at species, genus, or family level and added information on the ecology of seversal taxa. Members of Cenangiaceae appeared to be widespread as endophytes. Inclusion of encoelioid genera in Chaetomellaceae and Sclerotiniaceae added xylicolous saprotrophs to these families.