Ionic bonding

About: Ionic bonding is a research topic. Over the lifetime, 31107 publications have been published within this topic receiving 789634 citations. The topic is also known as: ionic bonding & chemical bond (ionic).

Natural population analysis

Abstract: A method of ‘‘natural population analysis’’ has been developed to calculate atomic charges and orbital populations of molecular wave functions in general atomic orbital basis sets. The natural analysis is an alternative to conventional Mulliken population analysis, and seems to exhibit improved numerical stability and to better describe the electron distribution in compounds of high ionic character, such as those containing metal atoms. We calculated ab initio SCF‐MO wave functions for compounds of type CH3X and LiX (X=F, OH, NH2, CH3, BH2, BeH, Li, H) in a variety of basis sets to illustrate the generality of the method, and to compare the natural populations with results of Mulliken analysis, density integration, and empirical measures of ionic character. Natural populations are found to give a satisfactory description of these molecules, providing a unified treatment of covalent and extreme ionic limits at modest computational cost.

Ionic Liquids-New "Solutions" for Transition Metal Catalysis.

Abstract: Ionic liquids are salts that are liquid at low temperature (<100 degrees C) which represent a new class of solvents with nonmolecular, ionic character. Even though the first representative has been known since 1914, ionic liquids have only been investigated as solvents for transition metal catalysis in the past ten years. Publications to date show that replacing an organic solvent by an ionic liquid can lead to remarkable improvements in well-known processes. Ionic liquids form biphasic systems with many organic product mixtures. This gives rise to the possibility of a multiphase reaction procedure with easy isolation and recovery of homogeneous catalysts. In addition, ionic liquids have practically no vapor pressure which facilitates product separation by distillation. There are also indications that switching from a normal organic solvent to an ionic liquid can lead to novel and unusual chemical reactivity. This opens up a wide field for future investigations into this new class of solvents in catalytic applications.

On the Theory of Oxidation‐Reduction Reactions Involving Electron Transfer. I

Abstract: A mechanism for electron transfer reactions is described, in which there is very little spatial overlap of the electronic orbitals of the two reacting molecules in the activated complex. Assuming such a mechanism, a quantitative theory of the rates of oxidation‐reduction reactions involving electron transfer in solution is presented. The assumption of "slight‐overlap" is shown to lead to a reaction path which involves an intermediate state X* in which the electrical polarization of the solvent does not have the usual value appropriate for the given ionic charges (i.e., it does not have an equilibrium value). Using an equation developed elsewhere for the electrostatic free energy of nonequilibrium states, the free energy of all possible intermediate states is calculated. The characteristics of the most probable state are then determined with the aid of the calculus of variations by minimizing its free energy subject to certain restraints. A simple expression for the electrostatic contribution to the free energy of formation of the intermediate state from the reactants, ΔF*, is thereby obtained in terms of known quantities, such as ionic radii, charges, and the standard free energy of reaction. This intermediate state X* can either disappear to reform the reactants, or by an electronic jump mechanism to form a state X in which the ions are characteristic of the products. When the latter process is more probable than the former, the over‐all reaction rate is shown to be simply the rate of formation of the intermediate state, namely the collision number in solution multiplied by exp(—ΔF*/kT). Evidence in favor of this is cited. In a detailed quantitative comparison, given elsewhere, with the kinetic data, no arbitrary parameters are needed to obtain reasonable agreement of calculated and experimental results.

A new force field for molecular mechanical simulation of nucleic acids and proteins

Abstract: We present the development of a force field for simulation of nucleic acids and proteins. Our approach began by obtaining equilibrium bond lengths and angles from microwave, neutron diffraction, and prior molecular mechanical calculations, torsional constants from microwave, NMR, and molecular mechanical studies, nonbonded parameters from crystal packing calculations, and atomic charges from the fit of a partial charge model to electrostatic potentials calculated by ab initio quantum mechanical theory. The parameters were then refined with molecular mechanical studies on the structures and energies of model compounds. For nucleic acids, we focused on methyl ethyl ether, tetrahydrofuran, deoxyadenosine, dimethyl phosphate, 9-methylguanine-l-methylcytosine hydrogen-bonded complex, 9-methyladenine-l-methylthymine hydrogen-bonded complex, and 1,3-dimethyluracil base-stacked dimer. Bond, angle, torsional, nonbonded, and hydrogen-bond parameters were varied to optimize the agreement between calculated and experimental values for sugar pucker energies and structures, vibrational frequencies of dimethyl phosphate and tetrahydrofuran, and energies for base pairing and base stacking. For proteins, we focused on 4>,'lt maps of glycyl and alanyl dipeptides, hydrogen-bonding interactions involving the various protein polar groups, and energy refinement calculations on insulin. Unlike the models for hydrogen bonding involving nitrogen and oxygen electron donors, an adequate description of sulfur hydrogen bonding required explicit inclusion of lone pairs. There are two fundamental problems in simulating the struc­ tural and energetic properties of molecules: the first is how to choose an analytical been placed E(R) which correctly describes the energy of the system in terms of its 3N degrees of freedom. The second is how the simulation can search or span conforma­ tional space (R) in order to answer questions posed by the scientist interested in the properties of the system. For complex systems, solution to the first problem are an es­ sential first step in attacking the second problem, and thus, considerable effort has been placed in developing analytical functions that are simple enough to allow one to simulate the properties of complex molecules yet accurate enough to obtain meaningful estimates for structures and energies. In the case of the structures and thermodynamic stabilities of saturated hydrocarbons in inert solvents or the gas phase, the first problem has been essentially solved by molecular mechanics ap­ proaches of Allinger, I Ermer and Lifson,2 and their co-workers. However, for polar and ionic molecules in condensed phases, unsolved questions remain as to the best form of the analytical function E(R). In the area of proteins and peptides, seminal work has come from the Scheraga 3 and Lifson 4 schools. The Scheraga group has used both crystal packing (intermolecular) and con­ formational properties of peptides to arrive at force fields ECEPP, UNECEPP, and EPEN for modeling structural and thermodynamic properties of peptides and proteins. Levitt, using the energy refinement software developed in the Lifson group, has proposed a force field for proteins based on calculations on lysozyme,S and Gelin and Karplus have adapted this software along with many parameters from the Scheraga studies to do molecular dynamics