Methanogen

About: Methanogen is a research topic. Over the lifetime, 1146 publications have been published within this topic receiving 48254 citations.

The short-term effects of salinization on anaerobic nutrient cycling and microbial community structure in sediment from a freshwater wetland

Abstract: Wetlands in many inland catchments are being subjected to increasing salinity. To expand our limited understanding of how increasing salinity will alter carbon and nutrient dynamics in freshwater sediments, we carried out microcosm experiments to examine the acute effects of increasing salinity on the anaerobic cycling of carbon, nutrients (N, P, and S), metals (Fe and Mn), and microbial community structure in sediments from a non-salt-impacted freshwater wetland. Sediments were collected from a wetland on the River Murray floodplain, south eastern Australia and incubated with NaCl concentrations ranging from 0 to 100 mmol L−1. Increasing NaCl concentration led to the immediate release of between about 80 and 190 μmol L−1 ammonium and 235 to 3300 μmol L−1 Fe(II) from the sediments, the amount released ‘increasing with NaCl concentration. Conversely, net phosphate release decreased with increasing NaCl concentration. The overall microbial community structure, determined from phospholipid fatty acid profiles, changed only at the highest NaCl loadings, with evidence of a decrease in microbial diversity. Bacterial community structure, determined by examining terminal restriction fragment length polymorphism (T-RFLP) of the bacterial 16S rRNA gene, showed little response to increasing NaCl concentration. Conversely, the archaeal (methanogen) population, determined by examining T-RFLP of the archaeal 16S rRNA gene, showed significant changes with increasing NaCl loading. This shift corresponded with a significant decrease in methane production from salt-impacted sediments and therefore shows a linkage between microbial community structure and an ecosystem process.

Isolation of a methanogen from deep marine sediments that contain methane hydrates, and description of Methanoculleus submarinus sp. nov.

Abstract: We isolated a methanogen from deep in the sediments of the Nankai Trough off the eastern coast of Japan. At the sampling site, the water was 950 m deep and the sediment core was collected at 247 m below the sediment surface. The isolated methanogen was named Nankai-1. Cells of Nankai-1 were nonmotile and highly irregular coccoids (average diameter, 0.8 to 2 m) and grew with hydrogen or formate as a catabolic substrate. Cells required acetate as a carbon source. Yeast extract and peptones were not required but increased the growth rate. The cells were mesophilic, growing most rapidly at 45°C (no growth at 55°C). Cells grew with a maximum specific growth rate of 2.43 day 1 at 45°C. Cells grew at pH values between 5.0 and 8.7 but did not grow at pH 4.7 or 9.0. Strain Nankai-1 grew in a wide range of salinities, from 0.1 to 1.5 M Na. The described phenotypic characteristics of this novel isolate were consistent with the in situ environment of the Nankai Trough. This is the first report of a methanogenic isolate from methane hydrate-bearing sediments. Phylogenetic analysis of its 16S rRNA gene sequence indicated that it is most closely related to Methanoculleus marisnigri (99.1% sequence similarity), but DNA hybridization experiments indicated a DNA sequence similarity of only 49%. Strain Nankai-1 was also found to be phenotypically similar to M. marisnigri, but two major phenotypic differences were found: strain Nankai-1 does not require peptones, and it grows fastest at a much higher temperature. We propose a new species, Methanoculleus submarinus, with strain Nankai-1 as the type strain.

Effects of algal and terrestrial carbon on methane production rates and methanogen community structure in a temperate lake sediment

Abstract: Summary 1. Sources of atmospheric CH4 are both naturally occurring and anthropogenic. In fact, some anthropogenic activities may influence the production of CH4 from natural sources, such as lakes. 2. Ongoing changes in the catchment of lakes, including eutrophication and increased terrestrial organic carbon export, may affect CH4 production rates as well as shape methanogen abundance and community structure. Therefore, inputs from catchments to lakes should be examined for their effects on CH4 production. 3. We added algal and terrestrial carbon separately to lake sediment cores and measured CH4 production. We also used quantitative polymerase chain reaction and terminal restriction fragment length polymorphism to determine the effects of these carbon additions on methanogen abundance and community composition. 4. Our results indicate that CH4 production rates were significantly elevated following the addition of algal biomass. Terrestrial carbon addition also appeared to increase methanogenesis rates; however, the observed increase was not statistically significant. 5. Interestingly, increased CH4 production rates resulted from increases in per-cell activity rather than an increase in methanogen abundance or community compositional shifts, as indicated by our molecular analyses. 6. Overall, anthropogenic impacts on aquatic ecosystems can influence methanogenesis rates and should be considered in models of global methane cycling and climate.

Methanobacterium subterraneum sp. nov., a new alkaliphilic, eurythermic and halotolerant methanogen isolated from deep granitic groundwater

Abstract: Deep subterranean granitic aquifers have not been explored regarding methanogens until now. Three autotrophic methane-producing Archaea were isolated from deep granitic groundwater at depths of 68, 409 and 420 m. These organisms were non-motile, small, thin rods, 0·1-0·15 μm in diameter, and they could use hydrogen and carbon dioxide or formate as substrates for growth and methanogenesis. One of the isolates, denoted A8p, was studied in detail. It grew with a doubling time of 2·5 h under optimal conditions (20–40 °C, pH 7·8–8·8 and 0·2–1·2 M NaCI). Strain A8p is eurythermic as it grew between 3·6 and 45 °C. It was resistant to up to 20 mg bacitracin I-1. The G+C content was 54·5 mol%, as determined by thermal denaturation. Phylogenetic studies based upon 16S rRNA gene sequence comparisons placed the isolate A8p in the genus Methanobacterium. Phenotypic and phylogenetic characters indicate that the alkaliphilic, halotolerant strain A8p represents a new species. We propose the name Methanobacterium subterraneum for this species, and strain A8p (= DSM 11074T) is the type strain.

Expression of barley SUSIBA2 transcription factor yields high-starch low-methane rice

Abstract: Atmospheric methane is the second most important greenhouse gas after carbon dioxide, and is responsible for about 20% of the global warming effect since pre-industrial times. Rice paddies are the largest anthropogenic methane source and produce 7-17% of atmospheric methane. Warm waterlogged soil and exuded nutrients from rice roots provide ideal conditions for methanogenesis in paddies with annual methane emissions of 25-100-million tonnes. This scenario will be exacerbated by an expansion in rice cultivation needed to meet the escalating demand for food in the coming decades. There is an urgent need to establish sustainable technologies for increasing rice production while reducing methane fluxes from rice paddies. However, ongoing efforts for methane mitigation in rice paddies are mainly based on farming practices and measures that are difficult to implement. Despite proposed strategies to increase rice productivity and reduce methane emissions, no high-starch low-methane-emission rice has been developed. Here we show that the addition of a single transcription factor gene, barley SUSIBA2 (refs 7, 8), conferred a shift of carbon flux to SUSIBA2 rice, favouring the allocation of photosynthates to aboveground biomass over allocation to roots. The altered allocation resulted in an increased biomass and starch content in the seeds and stems, and suppressed methanogenesis, possibly through a reduction in root exudates. Three-year field trials in China demonstrated that the cultivation of SUSIBA2 rice was associated with a significant reduction in methane emissions and a decrease in rhizospheric methanogen levels. SUSIBA2 rice offers a sustainable means of providing increased starch content for food production while reducing greenhouse gas emissions from rice cultivation. Approaches to increase rice productivity and reduce methane emissions as seen in SUSIBA2 rice may be particularly beneficial in a future climate with rising temperatures resulting in increased methane emissions from paddies.