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Methanosarcina barkeri

About: Methanosarcina barkeri is a research topic. Over the lifetime, 703 publications have been published within this topic receiving 32151 citations.


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Journal ArticleDOI
TL;DR: Three new ether phospholipids, in addition to five lipids that had already been reported, accounted for 88% of the total polar lipids of this organism, and were shared with extremely halophilic Archaea.

12 citations

Journal ArticleDOI
TL;DR: It is demonstrated that the Methanomethylophilus alvus PylRS (MaPylRS) and its cognate tRNACUAMaPyl support the incorporation of ncAAs into proteins produced in Saccharomyces cerevisiae using stop codon suppression methodologies.
Abstract: Archaeal pyrrolysyl-tRNA synthetases (PylRSs) have been used to genetically encode over 200 distinct noncanonical amino acids (ncAAs) in proteins in Escherichia coli and mammalian cells. This vastly expands the range of chemical functionality accessible within proteins produced in these organisms. Despite these clear successes, explorations of PylRS function in yeast remain limited. In this work, we demonstrate that the Methanomethylophilus alvus PylRS (MaPylRS) and its cognate tRNACUAMaPyl support the incorporation of ncAAs into proteins produced in Saccharomyces cerevisiae using stop codon suppression methodologies. Additionally, we prepared three MaPylRS mutants originally engineered in E. coli and determined that all three were active with one or more ncAAs, although with low efficiencies of ncAA incorporation in comparison to the parent MaPylRS. Alongside MaPylRS variants, we evaluated the activity of previously reported Methanosarcina mazei, Methanosarcina barkeri, and chimeric M. mazei and M. barkeri PylRSs. Using S. cerevisiae RJY100 and pairing these PylRSs with the M. mazei tRNACUA, we did not observe any detectable stop codon suppression activity under the same conditions that produced moderately efficient ncAA incorporation with MaPylRS. The addition of MaPylRS/tRNACUAMaPyl to the orthogonal translation machinery toolkit in S. cerevisiae potentially opens the door to hundreds of ncAAs that have not previously been genetically encodable using other aminoacyl-tRNA synthetase/tRNA pairs. Extending the scope of ncAA incorporation in yeast could powerfully advance chemical and biological research for applications ranging from basic biological discovery to enzyme engineering and therapeutic protein lead discovery.

12 citations

Journal ArticleDOI
TL;DR: The conversion of trimethylamine to methane, carbon dioxide and ammonia as catalyzed by cell suspensions of Methanosarcina barkeri was coupled to the generation of a protonmotive force and to the synthesis of ATP.
Abstract: The conversion of trimethylamine to methane, carbon dioxide and ammonia as catalyzed by cell suspensions of Methanosarcina barkeri was coupled to the generation of a protonmotive force and to the synthesis of ATP. Methanogenesis as well as ATP formation and protonmotive force generation was abolished by the uncoupler tetrachloro-salicylanilide (TCS). Inhibition of methane formation was reversed by addition of formaldehyde, which was predominantly oxidized to carbon dioxide, whereas trimethylamine was predominantly reduced to methane and ammonia under these conditions. Cell extracts of M. barkeri were unable to convert trimethylamine to methane, carbon dioxide and ammonia independent from the presence or absence of ATP.

12 citations

Journal ArticleDOI
TL;DR: Semicontinuous anaerobic digestion of cattle dung using brackish waters with conductivity from 1000–15000 μS/cm was carried out in 25 l biogas plants of floating-dome design and Methanobacterium bryantii was found to tolerate water of the highest conductivity.

11 citations

Journal ArticleDOI
TL;DR: The purpose of the present study was to investigate whether the rumen simulation technique (RUSITEC) would be a suitable model to evaluate the methanogenic or acidogenic potential of methanol during ruminal fermentation.
Abstract: Introduction Major methanol sources in ruminant feeds are pectins esterified with methoxyl groups. Methanol can be released by pectin esterase activity of rumen bacteria (R exova-B enkova and M arkovic 1976). It has been detected in rumen fluid of cows in vivo and in vitro (V antcheva et al. 1970, 1972). It is, however, not likely to accumulate in the rumen fluid since it can be readily used by methylotrophic organisms. Methanogenic archaebacteria such as Methanosarcina barkeri (H utten et al. 1980; M& uuml; ller et al. 1986) are able to use methanol as energy and carbon source. Two equations have been reported for this conversion: 4CH4 → 3CH4 + CO2 + 2 H2O (1) CH3OH + H2 → CH4 + H2O (2) Methanogenesis from methanol has been shown to occur during in vitro fermentations with rumen fluid as inoculum (C zerkawski and B reckenridge 1972; P ol and D emeyer 1988). However, acidogenic micro-organisms, such as Eubacterium limosum or Butyribacterium methylotrophicum, may also utilize methanol. In rumen fluid of sheep fed a molasses-rich diet, Eubacterium limosum was the predominant methanol-utilizing bacterium (G enthner et al. 1981). Major products of these acidogenic methylotrophs are acetate and butyrate. These different fermentation end-products, methane versus fatty acids, will affect the metabolizable energy content of feedstuffs that are rich in highly methoxylated pectins or other methyl group-containing compounds. The purpose of the present study was to investigate whether the rumen simulation technique (RUSITEC) would be a suitable model to evaluate the methanogenic or acidogenic potential of methanol during ruminal fermentation. The study focused on methane production, fermentation characteristics and methanol turnover. Fermentation traits included pH, redox potential, ammonia and volatile fatty acid production, and degradation of feed constituents.

11 citations


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Performance
Metrics
No. of papers in the topic in previous years
YearPapers
20237
202212
202112
202012
20197
201818