Topic

# Mixed model

About: Mixed model is a(n) research topic. Over the lifetime, 3367 publication(s) have been published within this topic receiving 159129 citation(s). The topic is also known as: mixed effects model.

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30 May 2017

Abstract: LINEAR MODELS A simple linear model Linear models in general The theory of linear models The geometry of linear modelling Practical linear models Practical modelling with factors General linear model specification in R Further linear modelling theory Exercises GENERALIZED LINEAR MODELS The theory of GLMs Geometry of GLMs GLMs with R Likelihood Exercises INTRODUCING GAMS Introduction Univariate smooth functions Additive models Generalized additive models Summary Exercises SOME GAM THEORY Smoothing bases Setting up GAMs as penalized GLMs Justifying P-IRLS Degrees of freedom and residual variance estimation Smoothing Parameter Estimation Criteria Numerical GCV/UBRE: performance iteration Numerical GCV/UBRE optimization by outer iteration Distributional results Confidence interval performance Further GAM theory Other approaches to GAMs Exercises GAMs IN PRACTICE: mgcv Cherry trees again Brain imaging example Air pollution in Chicago example Mackerel egg survey example Portuguese larks example Other packages Exercises MIXED MODELS and GAMMs Mixed models for balanced data Linear mixed models in general Linear mixed models in R Generalized linear mixed models GLMMs with R Generalized additive mixed models GAMMs with R Exercises APPENDICES A Some matrix algebra B Solutions to exercises Bibliography Index

8,137 citations

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TL;DR: The lmerTest package extends the 'lmerMod' class of the lme4 package, by overloading the anova and summary functions by providing p values for tests for fixed effects, and implementing the Satterthwaite's method for approximating degrees of freedom for the t and F tests.

Abstract: One of the frequent questions by users of the mixed model function lmer of the lme4 package has been: How can I get p values for the F and t tests for objects returned by lmer? The lmerTest package extends the 'lmerMod' class of the lme4 package, by overloading the anova and summary functions by providing p values for tests for fixed effects. We have implemented the Satterthwaite's method for approximating degrees of freedom for the t and F tests. We have also implemented the construction of Type I - III ANOVA tables. Furthermore, one may also obtain the summary as well as the anova table using the Kenward-Roger approximation for denominator degrees of freedom (based on the KRmodcomp function from the pbkrtest package). Some other convenient mixed model analysis tools such as a step method, that performs backward elimination of nonsignificant effects - both random and fixed, calculation of population means and multiple comparison tests together with plot facilities are provided by the package as well.

7,633 citations

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TL;DR: This paper is written as a step-by-step tutorial that shows how to fit the two most common multilevel models: (a) school effects models, designed for data on individuals nested within naturally occurring hierarchies (e.g., students within classes); and (b) individual growth models,designed for exploring longitudinal data (on individuals) over time.

Abstract: SAS PROC MIXED is a flexible program suitable for fitting multilevel models, hierarchical linear models, and individual growth models. Its position as an integrated program within the SAS statistic...

2,822 citations

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01 Jan 2001

Abstract: Preface. Preface to the First Edition. 1. Introduction. 1.1 Models. 1.2 Factors, Levels, Cells, Effects And Data. 1.3 Fixed Effects Models. 1.4 Random Effects Models. 1.5 Linear Mixed Models (Lmms). 1.6 Fixed Or Random? 1.7 Inference. 1.8 Computer Software. 1.9 Exercises. 2. One-Way Classifications. 2.1 Normality And Fixed Effects. 2.2 Normality, Random Effects And MLE. 2.3 Normality, Random Effects And REM1. 2.4 More On Random Effects And Normality. 2.5 Binary Data: Fixed Effects. 2.6 Binary Data: Random Effects. 2.7 Computing. 2.8 Exercises. 3. Single-Predictor Regression. 3.1 Introduction. 3.2 Normality: Simple Linear Regression. 3.3 Normality: A Nonlinear Model. 3.4 Transforming Versus Linking. 3.5 Random Intercepts: Balanced Data. 3.6 Random Intercepts: Unbalanced Data. 3.7 Bernoulli - Logistic Regression. 3.8 Bernoulli - Logistic With Random Intercepts. 3.9 Exercises. 4. Linear Models (LMs). 4.1 A General Model. 4.2 A Linear Model For Fixed Effects. 4.3 Mle Under Normality. 4.4 Sufficient Statistics. 4.5 Many Apparent Estimators. 4.6 Estimable Functions. 4.7 A Numerical Example. 4.8 Estimating Residual Variance. 4.9 Comments On The 1- And 2-Way Classifications. 4.10 Testing Linear Hypotheses. 4.11 T-Tests And Confidence Intervals. 4.12 Unique Estimation Using Restrictions. 4.13 Exercises. 5. Generalized Linear Models (GLMs). 5.1 Introduction. 5.2 Structure Of The Model. 5.3 Transforming Versus Linking. 5.4 Estimation By Maximum Likelihood. 5.5 Tests Of Hypotheses. 5.6 Maximum Quasi-Likelihood. 5.7 Exercises. 6. Linear Mixed Models (LMMs). 6.1 A General Model. 6.2 Attributing Structure To VAR(y). 6.3 Estimating Fixed Effects For V Known. 6.4 Estimating Fixed Effects For V Unknown. 6.5 Predicting Random Effects For V Known. 6.6 Predicting Random Effects For V Unknown. 6.7 Anova Estimation Of Variance Components. 6.8 Maximum Likelihood (Ml) Estimation. 6.9 Restricted Maximum Likelihood (REMl). 6.10 Notes And Extensions. 6.11 Appendix For Chapter 6. 6.12 Exercises. 7. Generalized Linear Mixed Models. 7.1 Introduction. 7.2 Structure Of The Model. 7.3 Consequences Of Having Random Effects. 7.4 Estimation By Maximum Likelihood. 7.5 Other Methods Of Estimation. 7.6 Tests Of Hypotheses. 7.7 Illustration: Chestnut Leaf Blight. 7.8 Exercises. 8. Models for Longitudinal data. 8.1 Introduction. 8.2 A Model For Balanced Data. 8.3 A Mixed Model Approach. 8.4 Random Intercept And Slope Models. 8.5 Predicting Random Effects. 8.6 Estimating Parameters. 8.7 Unbalanced Data. 8.8 Models For Non-Normal Responses. 8.9 A Summary Of Results. 8.10 Appendix. 8.11 Exercises. 9. Marginal Models. 9.1 Introduction. 9.2 Examples Of Marginal Regression Models. 9.3 Generalized Estimating Equations. 9.4 Contrasting Marginal And Conditional Models. 9.5 Exercises. 10. Multivariate Models. 10.1 Introduction. 10.2 Multivariate Normal Outcomes. 10.3 Non-Normally Distributed Outcomes. 10.4 Correlated Random Effects. 10.5 Likelihood Based Analysis. 10.6 Example: Osteoarthritis Initiative. 10.7 Notes And Extensions. 10.8 Exercises. 11. Nonlinear Models. 11.1 Introduction. 11.2 Example: Corn Photosynthesis. 11.3 Pharmacokinetic Models. 11.4 Computations For Nonlinear Mixed Models. 11.5 Exercises. 12. Departures From Assumptions. 12.1 Introduction. 12.2 Misspecifications Of Conditional Model For Response. 12.3 Misspecifications Of Random Effects Distribution. 12.4 Methods To Diagnose And Correct For Misspecifications. 12.5 Exercises. 13. Prediction. 13.1 Introduction. 13.2 Best Prediction (BP). 13.3 Best Linear Prediction (BLP). 13.4 Linear Mixed Model Prediction (BLUP). 13.5 Required Assumptions. 13.6 Estimated Best Prediction. 13.7 Henderson's Mixed Model Equations. 13.8 Appendix. 13.9 Exercises. 14. Computing. 14.1 Introduction. 14.2 Computing Ml Estimates For LMMs. 14.3 Computing Ml Estimates For GLMMs. 14.4 Penalized Quasi-Likelihood And Laplace. 14.5 Exercises. Appendix M: Some Matrix Results. M.1 Vectors And Matrices Of Ones. M.2 Kronecker (Or Direct) Products. M.3 A Matrix Notation. M.4 Generalized Inverses. M.5 Differential Calculus. Appendix S: Some Statistical Results. S.1 Moments. S.2 Normal Distributions. S.3 Exponential Families. S.4 Maximum Likelihood. S.5 Likelihood Ratio Tests. S.6 MLE Under Normality. References. Index.

2,742 citations