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Monte Carlo molecular modeling

About: Monte Carlo molecular modeling is a research topic. Over the lifetime, 11307 publications have been published within this topic receiving 409122 citations.


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Journal ArticleDOI
TL;DR: In this article, the statistical error due to finite sampling in the presence of thermal fluctuations in molecular simulation algorithms is analyzed and the errors depend on Mach number, Knudsen number, number of particles, etc.

276 citations

Journal ArticleDOI
TL;DR: In this paper, the authors apply the variational Monte Carlo method to the atoms He through Ne to calculate the first and second derivatives of an unreweighted variance and apply Newton's method to minimize this variance.
Abstract: We apply the variational Monte Carlo method to the atoms He through Ne. Our trial wave function is of the form introduced by Boys and Handy. We use the Monte Carlo method to calculate the first and second derivatives of an unreweighted variance and apply Newton’s method to minimize this variance. We motivate the form of the correlation function using the local current conservation arguments of Feynman and Cohen. Using a self‐consistent field wave function multiplied by a Boys and Handy correlation function, we recover a large fraction of the correlation energy of these atoms. We give the value of all variational parameters necessary to reproduce our wave functions. The method can be extended easily to other atoms and to molecules.

275 citations

Journal ArticleDOI
TL;DR: In this article, the relationship between Monte Carlo and quasi-Monte Carlo methods is analyzed from both theoretical and practical points of view with special emphasis on high-dimensional integration with a focus on high dimensional integration.

274 citations

Journal ArticleDOI
TL;DR: Prokof'ev and Svistunov as mentioned in this paper performed a detailed study of the Fr\"ohlich polaron model on the basis of diagrammatic quantum Monte Carlo method.
Abstract: A detailed study of the Fr\"ohlich polaron model is performed on the basis of diagrammatic quantum Monte Carlo method [N. V. Prokof'ev and B. V. Svistunov, Phys. Rev. Lett. $81,$ 2514 (1998)]. The method is further developed both quantitatively (performance) and qualitatively (new estimators), and is enhanced by spectral analysis of the polaron Green's function, within an approach developed in the present paper. We present up to date results for the binding energy, and make available precise data for the effective mass, including the region of intermediate and strong couplings. We look at the structure of the polaron cloud and answer such questions as the average number of phonons in the cloud and their number/momentum distribution. The spectral analysis reveals nontrivial structure of the spectral density at intermediate and large coupling: the spectral continuum features pronounced peaks that we attribute to unstable excited states of the polaron.

273 citations

Journal ArticleDOI
TL;DR: In this article, an approach for directly determining the liquid-vapor phase equilibrium of a model system at any temperature along the coexistence line is described, which relies on transition matrix Monte Carlo ideas developed by Fitzgerald, Picard and Silver.
Abstract: An approach for directly determining the liquid–vapor phase equilibrium of a model system at any temperature along the coexistence line is described. The method relies on transition matrix Monte Carlo ideas developed by Fitzgerald, Picard, and Silver [Europhys. Lett. 46, 282 (1999)]. During a Monte Carlo simulation attempted transitions between states along the Markov chain are monitored as opposed to tracking the number of times the chain visits a given state as is done in conventional simulations. Data collection is highly efficient and very precise results are obtained. The method is implemented in both the grand canonical and isothermal–isobaric ensemble. The main result from a simulation conducted at a given temperature is a density probability distribution for a range of densities that includes both liquid and vapor states. Vapor pressures and coexisting densities are calculated in a straightforward manner from the probability distribution. The approach is demonstrated with the Lennard-Jones fluid. Coexistence properties are directly calculated at temperatures spanning from the triple point to the critical point.

273 citations


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Performance
Metrics
No. of papers in the topic in previous years
YearPapers
202313
202242
20212
20203
20198
201853