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Showing papers on "Oyster published in 2015"


Journal ArticleDOI
TL;DR: In 2007, the US west coast shellfish industry began to feel the effects of unprecedented levels of larval mortality in commercial hatcheries producing the Pacific oyster Crassostrea gigas as discussed by the authors.
Abstract: In 2007, the US west coast shellfish industry began to feel the effects of unprecedented levels of larval mortality in commercial hatcheries producing the Pacific oyster Crassostrea gigas. Subsequently, researchers at Whiskey Creek Shellfish Hatchery, working with academic and government scientists, showed a high correlation between aragonite saturation state (Ωarag) of inflowing seawater and survival of larval groups, clearly linking increased CO2 to hatchery failures. This work led the Pacific Coast Shellfish Growers Association (PCSGA) to instrument shellfish hatcheries and coastal waters, establishing a monitoring network in collaboration with university researchers and the US Integrated Ocean Observing System. Analytical developments, such as the ability to monitor Ωarag in real time, have greatly improved the industry’s understanding of carbonate chemistry and its variability and informed the development of commercial-scale water treatment systems. These treatment systems have generally proven effective, resulting in billions of additional oyster larvae supplied to Pacific Northwest oyster growers. However, significant challenges remain, and a multifaceted approach, including selective breeding of oyster stocks, expansion of hatchery capacity, continued monitoring of coastal water chemistry, and improved understanding of biological responses will all be essential to the survival of the US west coast shellfish industry. Full text: 0865_CoastalAcidImpactsShellfish.pdf

176 citations


Journal ArticleDOI
TL;DR: The great diversity in immune and stress response genes exhibited by expanded gene families as well as high sequence and structural polymorphisms may be central to oyster's adaptation to highly stressful and widely changing environments.

138 citations


Journal ArticleDOI
TL;DR: The mobilization and complex regulation of expanded innate immune-gene families highlights the oyster genome's adaptation to a virus-rich marine environment and provides unprecedented insights into antiviral response in a mollusc.

121 citations


Journal ArticleDOI
TL;DR: It is demonstrated that oysters are a reservoir of putative pathogens, and that the geographic origin, age, and cultivation method of oysters influence disease expression, as well as that juvenile mortalities can occur in the absence of herpes virus.
Abstract: Successive disease outbreaks in oyster (Crassostrea gigas) beds in France have resulted in dramatic losses in production, and subsequent decline in the oyster-farming industry. Deaths of juvenile oysters have been associated with the presence of a herpes virus (OsHV-1 μvar) and bacterial populations of the genus Vibrio. Although the pathogenicity of OsHV-1 μvar, as well as several strains of Vibrio has been demonstrated by experimental infections, our understanding of the complexity of infections occurring in the natural environment remains limited. In the present study, we use specific-pathogen-free (SPF) oysters infected in an estuarine environment to study the diversity and dynamics of cultured microbial populations during disease expression. We observe that rapid Vibrio colonization followed by viral replication precedes oyster death. No correlation was found between the vibrio concentration and viral load in co-infected animals. We show that the quantity of viral DNA is a predictor of mortality, however, in the absence of bacteria, a high load of herpes virus is not sufficient to induce the full expression of the disease. In addition, we demonstrate that juvenile mortalities can occur in the absence of herpes virus, indicating that the herpes virus appears neither essential nor sufficient to cause juvenile deaths; whereas bacteria are necessary for the disease. Finally, we demonstrate that oysters are a reservoir of putative pathogens, and that the geographic origin, age, and cultivation method of oysters influence disease expression.

120 citations


Journal ArticleDOI
TL;DR: The present study identified factors associated with dis- ease-induced oyster mortality and proposed mitigation strategies in terms of the regu- lation of oyster movements between sites, timing of seeding and spatial planning, taking into account seawater temperature and seed origin.
Abstract: Mortalities of oyster Crassostrea gigas seed associated with ostreid herpesvirus OsHV-1 μVar have been observed in many oyster-producing countries since 2008. The present study, comprised of 4 complementary experiments, aimed to identify factors associated with dis- ease-induced oyster mortality in order to propose mitigation strategies. Our first experiment com- pared survival of oysters from natural spatfall with others sampled from nurseries, after thermal elevation in the laboratory from <14 to 21°C. A total of 60% of the tested wild seed batches (n = 51) were infected by OsHV-1, exhibited mortality and were able to transmit the disease to cohab- ited naive oysters. Comparatively, only 1 out of the 32 tested batches sampled from nurseries pre- sented similar characteristics. In a second experiment, we studied the effects that timing and dura- tion of exposure to field conditions had on risk of infection and mortality in the laboratory at 21°C. Naive oysters deployed in the field during winter and spring, when seawater temperatures were <14.7°C, showed no mortality in the laboratory, and OsHV-1 DNA was not detected by PCR. How- ever, in oysters transferred to the field, OsHV-1 was observed when seawater temperature reached ~15.3°C. Our third experiment showed that the odds of mortality decreased with age of oysters when facing the disease. Further, we observed that odds of disease mortality decreased with water renewal and increased with the biomass of neighbouring infected oysters under con- trolled conditions. Based on these findings, we propose mitigation strategies in terms of the regu- lation of oyster movements between sites, timing of seeding and spatial planning, taking into account seawater temperature and seed origin.

113 citations


Journal ArticleDOI
TL;DR: The results of the experiment indicated that potato dextrose agar (PDA) and YDA were the most suitable media for the mycelium growth of oyster mushroom PO while four media were not significantly different in supporting mycelia growth of Oyster mushroom PC.
Abstract: The influences of temperature and nutritional conditions on the mycelium growth of oyster mushroom Pleurotus ostreatus (PO) and Pleurotus cystidiosus (PC) were investigated in laboratory experiment during the summer season of 2014. The results of the experiment indicated that potato dextrose agar (PDA) and yam dextrose agar (YDA) were the most suitable media for the mycelium growth of oyster mushroom PO while four media (PDA, YDA, sweet potato dextrose agar, and malt extract agar medium) were not significantly different in supporting mycelium growth of oyster mushroom PC. The optimal temperature for mycelium growth of both oyster mushroom species was obtained at 28℃. Mycelium growth of oyster mushroom PO was improved by carbon sources such as glucose, molasses, and at 1~5% sucrose concentration, mycelium colony diameter of mushroom PO was achieved the highest value. Whereas glucose, dextrose, and sucrose as carbon sources gave the good mycelium growth of oyster mushroom PC, and at 1~3% sucrose concentration, mycelium colony diameter of PC was achieved the maximum value. Ammonium chloride concentrations at 0.03~0.09% and 0.03~0.05% also gave the greatest values in mycelium colony diameter of mushroom PO and PC. Brown rice was found to be the most favourable for mycelium growth of two oyster mushroom species. In addition, sugarcane residue, acasia sawdust and corn cob were selected as favourable lignocellulosic substrate sources for mycelium growth of both oyster mushrooms.

105 citations


Journal ArticleDOI
TL;DR: The collapse and extirpation of native oyster reefs (Ostrea angasi) over the course of a commercial fishery in Australia is evaluated and a model of generational amnesia is considered to reflect a collective, intergenerational amnesia.
Abstract: Oyster reefs form over extensive areas and the diversity and productivity of sheltered coasts depend on them. Due to the relatively recent population growth of coastal settlements in Australia, we were able to evaluate the collapse and extirpation of native oyster reefs (Ostrea angasi) over the course of a commercial fishery. We used historical records to quantify commercial catch of O. angasi in southern Australia from early colonization, around 1836, to some of the last recorded catches in 1944 and used our estimates of catch and effort to map their past distribution and assess oyster abundance over 180 years. Significant declines in catch and effort occurred from 1886 to 1946 and no native oyster reefs occur today, but historically oyster reefs extended across more than 1,500 km of coastline. That oyster reefs were characteristic of much of the coastline of South Australia from 1836 to 1910 appears not to be known because there is no contemporary consideration of their ecological and economic value. Based on the concept of a shifted baseline, we consider this contemporary state to reflect a collective, intergenerational amnesia. Our model of generational amnesia accounts for differences in intergenerational expectations of food, economic value, and ecosystem services of nearshore areas. An ecological system that once surrounded much of the coast and possibly the past presence of oyster reefs altogether may be forgotten and could not only undermine progress towards their recovery, but also reduce our expectations of these coastal ecosystems.

103 citations


Journal ArticleDOI
TL;DR: This work reviews the literature on selective breeding programs for disease resistance in oyster species, and the impact of triploidy on such resistance, and it seems breeding for higher resistance to one disease does not confer higher resistance or susceptibility to another disease.

102 citations


Journal ArticleDOI
TL;DR: There was a high consistency between the expression levels determined by iTRAQ and Western blotting, highlighting the high reproducibility of the proteomic approach and its great value in revealing molecular mechanisms of stress responses.
Abstract: The Pacific oyster Crassostrea gigas is one of the dominant sessile inhabitants of the estuarine intertidal zone, which is a physically harsh environment due to the presence of a number of stressors. Oysters have adapted to highly dynamic and stressful environments, but the molecular mechanisms underlying such stress adaptation are largely unknown. In the present study, we examined the proteomic responses in the gills of C. gigas exposed to three stressors (high temperature, low salinity, and aerial exposure) they often encounter in the field. We quantitatively compared the gill proteome profiles using iTRAQ-coupled 2-D LC–MS/MS. There were 3165 identified proteins among which 2379 proteins could be quantified. Heat shock, hyposalinity, and aerial exposure resulted in 50, 15, and 33 differentially expressed gill proteins, respectively. Venn diagram analysis revealed substantial different responses to the three stressors. Only xanthine dehydrogenase/oxidase showed a similar expression pattern across the th...

91 citations


Journal ArticleDOI
TL;DR: This study demonstrates that mass selection for survival and OsHV-1 resistance was successful after four generations of selection, thus indicating a significant genetic improvement for the selected trait.

89 citations


Journal ArticleDOI
TL;DR: A broad description of the functionally relevant features of oyster C1qDC genes, their comparative expression levels and new evidence confirming that a gene family expansion event has occurred during the course of Bivalve evolution, leading to the diversification of hundreds of different C1QDC genes in both the Pteriomorphia and Heterodonta subclasses are provided.
Abstract: C1q domain-containing (C1qDC) proteins are regarded as important players in the innate immunity of bivalve mollusks and other invertebrates and their highly adaptive binding properties indicate them as efficient pathogen recognition molecules. Although experimental studies support this view, the molecular data available at the present time are not sufficient to fully explain the great molecular diversification of this family, present in bivalves with hundreds of C1q coding genes. Taking advantage of the fully sequenced genome of the Pacific oyster Crassostrea gigas and more than 100 transcriptomic datasets, we: (i) re-annotated the oyster C1qDC loci, thus identifying the correct genomic organization of 337 C1qDC genes, (ii) explored the expression pattern of oyster C1qDC genes in diverse developmental stages and adult tissues of unchallenged and experimentally treated animals; (iii) investigated the expansion of the C1qDC gene family in all major bivalve subclasses. Overall, we provide a broad description of the functionally relevant features of oyster C1qDC genes, their comparative expression levels and new evidence confirming that a gene family expansion event has occurred during the course of Bivalve evolution, leading to the diversification of hundreds of different C1qDC genes in both the Pteriomorphia and Heterodonta subclasses.

Journal ArticleDOI
TL;DR: Cellular and molecular insights are given into the Crassostrea gigas antimicrobial defense system with focus on antimicrobial peptides and proteins (AMPs), and the central role of the hemocytes in the modulation and control of oyster antimicrobial response is highlighted.

Journal ArticleDOI
01 May 2015-Talanta
TL;DR: The most ubiquitous compounds detected were the psychiatric drug venlanfaxine and the antibiotic azithromycin, with the highest concentrations found in mussel and oyster and 2.7ng/g dw, to the best of the authors' knowledge, this is the first time that azithromecin has been reported in environmental samples of marine biota.

Journal ArticleDOI
TL;DR: The identification of several highly induced and defence-related oyster transcripts supports the crucial role played by the innate immune system against the virus and opportunistic microbes possibly contributing to subsequent spat mortality.
Abstract: Summary Ostreid herpesvirus type 1 (OsHV-1) has become a problematic infective agent for the Pacific oyster Crassostrea gigas. In particular, the OsHV-1 μVar subtype has been associated with severe mortality episodes in oyster spat and juvenile oysters in France and other regions of the world. Factors enhancing the infectivity of the virus and its interactions with susceptible and resistant bivalve hosts are still to be understood, and only few studies have explored the expression of oyster or viral genes during productive infections. In this work, we have performed a dual RNA sequencing analysis on an oyster sample with a high viral load. High sequence coverage allowed us to thoroughly explore the OsHV-1 transcriptome and identify the activated molecular pathways in C. gigas. The identification of several highly induced and defence-related oyster transcripts supports the crucial role played by the innate immune system against the virus and opportunistic microbes possibly contributing to subsequent spat mortality.

Journal ArticleDOI
TL;DR: A team of genome and bioinformatics experts, in collaboration with the oyster research community, is sequencing, assembling, and annotating the first reference genome for the eastern oyster and producing an exhaustive transcriptome from a variety of oyster developmental stages and tissues in response to a diverse set of environmentally-relevant stimuli.

Journal ArticleDOI
Dandan Feng1, Qi Li1, Hong Yu1, Xuelin Zhao1, Lingfeng Kong1 
22 Dec 2015-PLOS ONE
TL;DR: This study discovered some potential shell coloration genes and related molecular mechanisms by the RNA-seq, which would provide foundational information to further study onshell coloration and assist in selective breeding in C. gigas.
Abstract: Background Shell color polymorphisms of Mollusca have contributed to development of evolutionary biology and population genetics, while the genetic bases and molecular mechanisms underlying shell pigmentation are poorly understood. The Pacific oyster (Crassostrea gigas) is one of the most important farmed oysters worldwide. Through successive family selection, four shell color variants (white, golden, black and partially pigmented) of C. gigas have been developed. To elucidate the genetic mechanisms of shell coloration in C. gigas and facilitate the selection of elite oyster lines with desired coloration patterns, differentially expressed genes (DEGs) were identified among the four shell color variants by RNA-seq.

Journal ArticleDOI
TL;DR: It is elucidated that marine oysters had high ability to accumulate, biotransform, and detoxify inorganic As.

Journal ArticleDOI
TL;DR: Results indicated that CgIntegrin served as a pattern recognition receptor with LPS binding activity, which could directly bind to V. splendidus and enhance the phagocytosis of oyster hemocytes.
Abstract: Integrins are a family of cell adhesion molecules which play important roles in the regulation of cell adhesion, migration, proliferation, apoptosis and phagocytosis. In the present study, the immune function of an integrin from the oyster Crassostrea gigas (designated CgIntegrin) was characterized to understand the regulatory mechanism of hemocyte phagocytosis toward different microbes. The full-length cDNA of CgIntegrin was 2571 bp with an open reading frame (ORF) of 2397 bp, encoding a polypeptide of 799 amino acids. The mRNA transcripts of CgIntegrin were predominantly detected in hemocytes, gonad and adductor muscle, while lowly in hepatopancreas, mantle and gill. The mRNA expression level was up-regulated at 6 h post lipopolysaccharide (LPS) stimulation (p < 0.01), while no significant change was observed after peptidoglycan (PGN) stimulation. The oyster hemocytes with relative high CgIntegrin expression level exhibited different phagocytic abilities towards different microorganism and particles, such as Gram-positive bacteria Vibrio splendidus, Gram-negative bacteria Staphylococcus aureus and latex beads. Moreover, the phagocytic rate towards V. splendidus was significantly decreased after the blockade of CgIntegrin using the polyclonal antibody. The recombinant CgIntegrin (rCgIntegrin) displayed agglutinating activity towards V. splendidus but not S. aureus and Y. lipolytica. It also exhibited a higher binding affinity towards LPS (compared to rTrx group) in a dose-dependent manner with the apparent dissociation constant (Kd) of 5.53 × 10−6 M. The results indicated that CgIntegrin served as a pattern recognition receptor with LPS binding activity, which could directly bind to V. splendidus and enhance the phagocytosis of oyster hemocytes.

Journal ArticleDOI
TL;DR: Results are consistent with field data collected during a 2-year sampling campaign in the northern Adriatic Sea and provide background information on the mechanisms promoting V.splendidus and V. aestuarianus persistence in coastal water, thus contributing to a better understanding of the epidemiology of the associated diseases.
Abstract: Summary The ecology of the oyster pathogens Vibrio splendidus and Vibrio aestuarianus in the brackish aquatic environment was extensively investigated in this study. By conducting laboratory experiments under natural setting conditions, it was shown that V. splendidus LGP32 strain generally exhibits longer persistence in both seawater and sediment than V. aestuarianus 01/32 strain. Both strains maintained viability and culturability for longer times in the sediment, suggesting that this compartment may represent a suitable niche for their persistence in the environment. In addition, both strains attached to chitin particles and copepods, the efficiency of attachment being higher in V. splendidus than in V. aestuarianus. Similarly, LGP32 strain showed a greater capability to form biofilm on poly-vinyl chloride (PVC) surfaces than 01/32 strain. LGP32 and 01/32 strains were also capable of entering a viable but non-culturable state after extended incubation at 5°C, a condition commonly found during cold season in the aquatic brackish environment. These results are consistent with field data collected during a 2-year sampling campaign in the northern Adriatic Sea and provide background information on the mechanisms promoting V. splendidus and V. aestuarianus persistence in coastal water, thus contributing to a better understanding of the epidemiology of the associated diseases.

Journal ArticleDOI
TL;DR: In this article, the authors collected intact sediment cores adjacent to and 15-20m away from two oyster reefs (Crassostrea virginica) in Great Bay, New Hampshire, USA: one reference site and one site with cultural eutrophication.
Abstract: Benthic deposition of carbon (C) and nitrogen (N)-rich oyster biodeposits may increase denitrification, or anaerobic respiration of nitrate (NO3 −) to di-nitrogen gas (N2). However, environmental drivers of C and N dynamics in oyster biodeposits and reef-adjacent sediments require clarification. In July 2012, we collected intact sediment cores adjacent to and 15–20 m away from two oyster reefs (Crassostrea virginica) in Great Bay, New Hampshire, USA: one reference site and one site with cultural eutrophication. We also measured seston, chlorophyll a, and in situ oyster feeding and biodeposition. Cores were incubated in continuous-flow chambers where inflow water received 15N-ammonium (NH4 +), 15NO3 −, or no isotopes (control). We quantified fluxes of dissolved nutrients and gasses (oxygen, 28N2, 29N2, 30N2, and argon) after 24 h. Finally, we measured size-fractionated sediment organic matter. At the eutrophic site, abundant phytoplankton in the 5–28 µm size range was correlated with enhanced oyster feeding rates and biodeposit quality (lower C:N). This site had greater denitrification rates in reef-adjacent cores relative to distal cores. Low production of 29,30N2 in 15NH4 + amended cores suggested water column or biodeposit NH4 + were unlikely to be converted to N2. At both sites, reef-adjacent cores had more shell and higher 29,30N2 production with 15NO3 − addition relative to distal cores, suggesting direct denitrification enhancement near reefs. Oysters likely increased sediment N2 production via high quality biodeposits (eutrophic site), and NO3 − diffusion via structural complexity of reef-adjacent sediment (both sites). Overall, results suggest oyster-mediated ecosystems services may be expected to vary with environmental conditions.

Journal ArticleDOI
03 Jun 2015-PLOS ONE
TL;DR: This is the first study demonstrating a large additive genetic variation for resistance to OsHV-1 infection in C. gigas, regardless of the methods used, which should help in selective breeding to improve resistance to viral infection in the Pacific oyster.
Abstract: The Pacific oyster, Crassostrea gigas, is the most important commercial oyster species cultivated in the world. Meanwhile, the ostreid herpesvirus 1 (OsHV-1) is one of the major pathogens affecting the Pacific oyster, and numerous mortality outbreaks related to this pathogen are now reported worldwide. To assess the genetic basis of resistance to OsHV-1 infection in spat C. gigas and to facilitate breeding programs for such a trait, if any exist, we compared the mortality of half- and full-sib families using three field methods and a controlled challenge by OsHV-1 in the laboratory. In the field, three methods were tested: (A) one family per bag; (B) one family per small soft mesh bag and all families inside one bag; (C) same as the previous methods but the oysters were individually labelled and then mixed. The mean mortality ranged from 80 to 82% and was related to OsHV-1 based on viral DNA detection. The narrow-sense heritability for mortality, and thus OsHV-1 resistance, ranged from 0.49 to 0.60. The high positive genetic correlations across the field methods suggested no genotype by environment interaction. Ideally, selective breeding could use method B, which is less time- and space-consuming. The narrow sense heritability for mortality under OsHV-1 challenge was 0.61, and genetic correlation between the field and the laboratory was ranged from 0.68 to 0.75, suggesting a weak genotype by environment interaction. Thus, most of families showing the highest survival performed well in field and laboratory conditions, and a similar trend was also observed for families with the lowest survival. In conclusion, this is the first study demonstrating a large additive genetic variation for resistance to OsHV-1 infection in C. gigas, regardless of the methods used, which should help in selective breeding to improve resistance to viral infection in C. gigas.

Journal ArticleDOI
TL;DR: It is demonstrated that dead reefs are increasing in number and coverage within Mosquito Lagoon, but this trend can be reversed with restoration.
Abstract: Globally, 85% of shellfish reefs have been lost during the past century. The severe loss of the eastern oyster Crassostrea virginica has encouraged different types of restoration efforts in the United States. In Mosquito Lagoon (ML), a shallow-water estuary on the east coast of central Florida, restoration focuses on providing additional substrate for larval recruitment via deployment of stabilized oyster shell. To assess the current number and area of natural, dead, and restored oyster reefs within ML, aerial photographs from 2009 were digitized using ArcGIS software. All reefs were screen digitized using a reef “signature” to estimate the surface area of each reef type. The maps from 2009 were then used as a guide to digitizing the historical aerial photographs (1943, 1951, 1967, 1971, 1984, 1995, and 2006). Oyster habitat within ML has decreased by almost 15 hectares between 1943 and 2009, which constitutes 24%of the 1943 lagoon-wide coverage. The impacts were greater in Canaveral National Sea...

Journal ArticleDOI
TL;DR: In this paper, the effect of ultraviolet-B (UV-B) light irradiation on the vitamin D2 content of several edible fruit bodies and mycelia and their antioxidant properties was studied.

Journal ArticleDOI
TL;DR: These findings demonstrate that assumptions about the suitability of sites for oyster restoration based on individual processes can be severely flawed, and that in-depth examination of multiple processes and sources of information are required for Oyster reef restoration plans to maximize success.
Abstract: Restoration strategies for native oyster populations rely on multiple sources of information, which often conflict due to time- and space-varying patterns in abundance and distribution. For instance, strategies based on population connectivity and disease resistance can differ, and extant and historical records of abundance and distribution are often at odds, such that the optimal strategy is unclear and valuable restoration sites may be excluded from consideration. This was the case for the Lynnhaven River subestuary of lower Chesapeake Bay, which was deemed unsuitable for Eastern Oyster restoration based on physical conditions, disease challenge, and extant oyster abundance. Consequently, we (i) evaluated previously unknown historical data from the 1800s, (ii) quantified extant oyster recruitment and abundance, physical conditions, and disease presence on constructed restoration reefs and alternative substrates, and (iii) assessed simulations from biophysical models to identify potential restoration sites in the metapopulation. The collective data distinguished numerous restoration sites (i) in the polyhaline zone (salinity 18.4-22.2) where disease resistance is evolving, (ii) where oysters were abundant in the late 1800s-early 1900s, (iii) of recent high recruitment, abundance and survival, despite consistent and elevated disease challenge, and (iv) interconnected as a metapopulation via larval dispersal. Moreover, a network of constructed restoration reefs met size structure, abundance and biomass standards of restoration success. These findings demonstrate that assumptions about the suitability of sites for oyster restoration based on individual processes can be severely flawed, and that in-depth examination of multiple processes and sources of information are required for oyster reef restoration plans to maximize success. We use these findings and previous information to recommend a strategy for successful restoration of subtidal oyster reefs throughout the range of the Eastern Oyster.

Journal ArticleDOI
TL;DR: This study describes the demographics of extant C. gigas reefs and provides a framework to predict reef accretion and population persistence under varying recruitment, growth and mortality scenarios.
Abstract: Marine species characterized as structure building, autogenic ecosystem engineers are recognized worldwide as potential tools for coastal adaptation efforts in the face of sea level rise. Successful employment of ecosystem engineers in coastal protection largely depends on long-term persistence of their structure, which is in turn dependent on the population dynamics of the individual species. Oysters, such as-the Pacific oyster (Crassostrea gigas), are recognized as ecosystem engineers with potential for use in coastal protection. Persistence of oyster reefs is strongly determined by recruitment and shell production (growth), processes facilitated by gregarious settlement on extant shell substrate. Although the Pacific oyster has been introduced world-wide, and has formed dense reefs in the receiving coastal waters, the population biology of live oysters and the quantitative mechanisms maintaining these reefs has rarely been studied, hence the aim of the present work. This study had two objectives: (1) to describe the demographics of extant C. gigas reefs, and (2) to estimate vertical reef accretion rates and carbonate production in these oyster reefs. Three long-living oyster reefs (>30 years old), which have not been exploited since their first occurrence, were examined in the Oosterschelde estuary in the Netherlands. A positive reef accretion rate (7.0-16.9 mm year(-1) shell material) was observed, consistent with self-maintenance and persistent structure. We provide a framework to predict reef accretion and population persistence under varying recruitment, growth and mortality scenarios. (C) 2015 Elsevier Ltd. All rights reserved.

Journal ArticleDOI
TL;DR: In this article, the authors collected triplicate intact sediment cores from restored oyster reefs located in different habitat contexts (adjacent to salt marshes, seagrass beds and mudflats), as well as salt marshhes and without reefs (controls), and measured sediment denitrification and fluxes of dissolved inorganic nitrogen were measured under ambient and experimentally elevated water column nitrate levels.
Abstract: Summary Like many ecosystem functions in marine and terrestrial environments, nutrient processing varies dramatically over small spatial scales, making efforts to apply findings within and across ecosystems challenging. In estuaries, information on the influence of habitat context on sediment nutrient cycling is lacking even though this is an important estuarine function with high societal value. We collected triplicate intact sediment cores from restored oyster reefs located in different habitat contexts (adjacent to salt marshes, seagrass beds and mudflats), as well as salt marshes, seagrass beds and mudflats without reefs (controls). Sediment denitrification and fluxes of dissolved inorganic nitrogen were measured under ambient and experimentally elevated water column nitrate levels. Under ambient nitrate, oyster reefs enhanced sediment denitrification by 18–275% over the controls, with highest rates of denitrification in the mudflat context. With experimentally elevated nitrate, the rate of denitrification was higher for oyster reefs compared to the controls in all contexts. This suggests that oyster reefs prime sediments to denitrify nitrate pulses by providing a labile carbon source for denitrifying bacteria. There was a weak positive relationship between oyster density and denitrification under ambient nitrate concentrations and a positive relationship with denitrification that became negative beyond ∼2400 individuals m−2 with elevated nitrate concentrations. The effect of the oyster reef on sediment denitrification was most pronounced in the mudflat context, due to the absence of other structured habitats and higher oyster density, compared to the other two habitat contexts investigated. The consistency of denitrification efficiency across the habitats and lack of difference between habitats with reefs and those without (controls) suggest oyster-mediated denitrification is an effective sink for nitrogen in coastal systems. Synthesis and applications. Our study indicates that oyster-mediated denitrification is dependent on the habitat context of the oyster reef, and variation in oyster density and the relative functional redundancy of oyster reefs where other structured habitats exist (e.g. seagrass and salt marshes) may explain this pattern. Efforts to model and predict ecosystem services provided through oyster reef restoration such as the removal of anthropogenically derived nitrogen should incorporate how habitat context influences ecosystem functions.

Journal ArticleDOI
TL;DR: In this paper, the authors quantified physical variables (temperature, salinity, duration and depth of water inundation), oyster reef properties (slope, vertical relief), and oyster recruitment, density, and biomass over a 1500 km scale across the South Atlantic Bight for one year.
Abstract: Physical-biological coupling helps structure aquatic communities, yet physical factors can vary widely across large, biogeographic scales. The eastern oyster (Crassostrea virginica) is an ecosystem engineer that creates intertidal reefs, filters water, promotes denitrification, stabilizes shorelines, and provides habitat throughout the inner waters of the U.S. South Atlantic Bight (SAB). We quantified physical variables (temperature, salinity, duration and depth of water inundation), oyster reef properties (slope, vertical relief), and oyster recruitment, density, and biomass over a 1500 km scale across the SAB for one year. All oyster-level and many reef-level variables exhibited unimodal patterns with latitude that peaked in Georgia and South Carolina estuaries. Of the physical variables, salinity and duration of water inundation over reefs were similar across all sites, and temperature declined linearly with increasing latitude, except during summer when it had no relationship with latitude. Depth of water inundation over reefs was the only physical variable with a prominent unimodal distribution that may explain the oyster’s biological responses. Similar durations of water inundation across all reefs coupled with higher water depths in the mid-latitude sites collectively indicate that these sites experience higher flow velocity, energy and net water volume delivery per unit time. The resultant higher accumulation of oyster biomass and heightened reef structure in areas of higher tidal energy emphasize that the physical forcing of the SAB (especially large cross-shelf gradients in tidal amplification) affects the biology of the eastern oyster, including its reef properties, with potential implications for community structure and ecosystem service delivery across a biogeographic scale.

Journal ArticleDOI
Lei Wei1, Qing Wang1, Huifeng Wu1, Chenglong Ji1, Jianmin Zhao1 
TL;DR: It is demonstrated that the combination of proteomics and metabolomics could provide an insightful view into the effects of OA on oyster C. gigas, hopefully shedding light on the physiological responses of marine mollusk to the OA stress.

Journal ArticleDOI
TL;DR: The filtration rate equations for three existing models (Cerco and Noel, 2005; Fulford et al., 2007; Powell et al, 1992) are reviewed and a newly developed function to describe temperature dependence is described.

Journal ArticleDOI
06 Oct 2015-PeerJ
TL;DR: The results demonstrate how site selection criteria, which include shoreline exposure and habitat suitability, are critical to ensuring greater positive impacts and longevity of oyster reef restoration projects.
Abstract: Oyster reefs provide valuable ecosystem services that contribute to coastal resilience. Unfortunately, many reefs have been degraded or removed completely, and there are increased efforts to restore oysters in many coastal areas. In particular, much attention has recently been given to the restoration of shellfish reefs along eroding shorelines to reduce erosion. Such fringing reef approaches, however, often lack empirical data to identify locations where reefs are most effective in reducing marsh erosion, or fully take into account habitat suitability. Using monitoring data from 5 separate fringing reef projects across coastal Louisiana, we quantify shoreline exposure (fetch + wind direction + wind speed) and reef impacts on shoreline retreat. Our results indicate that fringing oyster reefs have a higher impact on shoreline retreat at higher exposure shorelines. At higher exposures, fringing reefs reduced marsh edge erosion an average of 1.0 m y(-1). Using these data, we identify ranges of shoreline exposure values where oyster reefs are most effective at reducing marsh edge erosion and apply this knowledge to a case study within one Louisiana estuary. In Breton Sound estuary, we calculate shoreline exposure at 500 random points and then overlay a habitat suitability index for oysters. This method and the resulting visualization show areas most likely to support sustainable oyster populations as well as significantly reduce shoreline erosion. Our results demonstrate how site selection criteria, which include shoreline exposure and habitat suitability, are critical to ensuring greater positive impacts and longevity of oyster reef restoration projects.