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Showing papers on "Point spread function published in 2017"


Journal ArticleDOI
TL;DR: In this paper, a comprehensive set of techniques for quality control and authentication of packaged integrated circuits (IC) using terahertz (THz) time-domain spectroscopy (TDS) is developed.

151 citations


Journal ArticleDOI
TL;DR: In this article, a volumetric two-photon imaging of neurons using stereoscopy (vTwINS) is introduced, which uses an elongated, V-shaped point spread function to image a 3D brain volume.
Abstract: Two-photon laser scanning microscopy of calcium dynamics using fluorescent indicators is a widely used imaging method for large-scale recording of neural activity in vivo. Here, we introduce volumetric two-photon imaging of neurons using stereoscopy (vTwINS), a volumetric calcium imaging method that uses an elongated, V-shaped point spread function to image a 3D brain volume. Single neurons project to spatially displaced 'image pairs' in the resulting 2D image, and the separation distance between projections is proportional to depth in the volume. To demix the fluorescence time series of individual neurons, we introduce a modified orthogonal matching pursuit algorithm that also infers source locations within the 3D volume. We illustrated vTwINS by imaging neural population activity in the mouse primary visual cortex and hippocampus. Our results demonstrated that vTwINS provides an effective method for volumetric two-photon calcium imaging that increases the number of neurons recorded while maintaining a high frame rate.

120 citations


Journal ArticleDOI
TL;DR: In this article, the phase and amplitude of the electric field point spread function (E-field PSF) is measured in three dimensions, and a non-invasive scattering compensation method is proposed to cancel sample turbulence.
Abstract: A long-standing goal in biomedical imaging, the control of light inside turbid media, requires knowledge of how the phase and amplitude of an illuminating wavefront are transformed as the electric field propagates inside a scattering sample onto a target plane. So far, it has proved challenging to non-invasively characterize the scattered optical wavefront inside a disordered medium. Here, we present a non-invasive scattering compensation method, termed F-SHARP, which allows us to measure the scattered electric-field point spread function (E-field PSF) in three dimensions. Knowledge of the phase and amplitude of the E-field PSF makes it possible to optically cancel sample turbulence. We demonstrate the imaging capabilities of this technique on a variety of samples and notably through vertebrate brains and across thinned skull in vivo. A non-invasive scattering compensation method, termed F-SHARP, gives direct access to the phase and amplitude of the electric-field point spread function, enabling fast and high-resolution correction of aberrations and scattering in living tissue.

112 citations


Journal ArticleDOI
TL;DR: A comprehensive theory for cohesive mathematical modeling and simulation of THz imaging systems and simulated transmission THz images, showing great accuracy in terms of the location of the details and structural similarity are presented.
Abstract: This paper presents a comprehensive theory for cohesive mathematical modeling and simulation of THz imaging systems. For mathematical modeling of the point spread function (PSF), system and transmission variables such as spectrum, absorption coefficient, beam divergence, and depth of focus are incorporated into the Gaussian beam distribution. The raster scanning process is mathematically modeled as the convolution of the object function and the PSF. Simulated transmission THz images are achieved as a result. The simulated THz images, compared to the experimental THz images, show great accuracy in terms of the location of the details and structural similarity.

98 citations


Journal ArticleDOI
TL;DR: In this paper, the authors applied the tools used in super-resolution optical fluctuation imaging (SOFI) to contrastenhance ultrasound (CEUS) plane-wave scans.
Abstract: Ultrasound super-localization microscopy techniques presented in the last few years enable non-invasive imaging of vascular structures at the capillary level by tracking the flow of ultrasound contrast agents (gas microbubbles). However, these techniques are currently limited by low temporal resolution and long acquisition times. Super-resolution optical fluctuation imaging (SOFI) is a fluorescence microscopy technique enabling sub-diffraction limit imaging with high temporal resolution by calculating high order statistics of the fluctuating optical signal. The aim of this work is to achieve fast acoustic imaging with enhanced resolution by applying the tools used in SOFI to contrast-enhance ultrasound (CEUS) plane-wave scans. The proposed method was tested using numerical simulations and evaluated using two in-vivo rabbit models: scans of healthy kidneys and VX-2 tumor xenografts. Improved spatial resolution was observed with a reduction of up to 50% in the full width half max of the point spread function. In addition, substantial reduction in the background level was achieved compared to standard mean amplitude persistence images, revealing small vascular structures within tumors. The scan duration of the proposed method is less than a second while current super-localization techniques require acquisition duration of several minutes. As a result, the proposed technique may be used to obtain scans with enhanced spatial resolution and high temporal resolution, facilitating flow-dynamics monitoring. Our method can also be applied during a breath-hold, reducing the sensitivity to motion artifacts.

97 citations


Journal ArticleDOI
TL;DR: The conditions to attain the ultimate resolution predicted by quantum estimation theory for the case of two incoherent point sources using a linear imaging system are established.
Abstract: We establish the conditions to attain the ultimate resolution predicted by quantum estimation theory for the case of two incoherent point sources using a linear imaging system. The solution is closely related to the spatial symmetries of the detection scheme. In particular, for real symmetric point spread functions, any complete set of projections with definite parity achieves the goal.

85 citations


Journal ArticleDOI
TL;DR: It is demonstrated that cubic splines can capture the shape of any PSF with high accuracy and that they can be used for fitting thePSF with only a 2–3x increase in computation time as compared to Gaussian fitting.
Abstract: The resolution of super-resolution microscopy based on single molecule localization is in part determined by the accuracy of the localization algorithm. In most published approaches to date this localization is done by fitting an analytical function that approximates the point spread function (PSF) of the microscope. However, particularly for localization in 3D, analytical functions such as a Gaussian, which are computationally inexpensive, may not accurately capture the PSF shape leading to reduced fitting accuracy. On the other hand, analytical functions that can accurately capture the PSF shape, such as those based on pupil functions, can be computationally expensive. Here we investigate the use of cubic splines as an alternative fitting approach. We demonstrate that cubic splines can capture the shape of any PSF with high accuracy and that they can be used for fitting the PSF with only a 2–3x increase in computation time as compared to Gaussian fitting. We provide an open-source software package that measures the PSF of any microscope and uses the measured PSF to perform 3D single molecule localization microscopy analysis with reasonable accuracy and speed.

81 citations


Journal ArticleDOI
20 Jan 2017
TL;DR: In this paper, the spatial profile of transmitted coherent light after propagation through a strongly scattering sample is designed at will based on the experimentally measured transmission matrix, obtained by numerically adding an arbitrary mask in the Fourier domain prior to focusing.
Abstract: PSF engineering is of utmost interest, in particular for microscopy, but remains mostly restricted to weakly scattering or transparent samples. We report a method to design at will the spatial profile of transmitted coherent light after propagation through a strongly scattering sample. We compute an operator based on the experimentally measured transmission matrix, obtained by numerically adding an arbitrary mask in the Fourier domain prior to focusing. We demonstrate the strength of the technique through several examples: propagating Bessel beams, thus generating foci smaller than the diffraction-limited speckle grain; donut beams; and helical beams. We characterize the three-dimensional profile of the achieved foci and analyze the fundamental limitations of the technique. Our approach generalizes Fourier optics concepts for random media and opens in particular interesting perspectives for super-resolution imaging through turbid media.

71 citations


Journal ArticleDOI
TL;DR: A phase retrieval procedure based on maximum likelihood estimation (MLE) is used to produce an improved, experimentally calibrated model of a point spread function (PSF) for use in three-dimensional (3D) localization microscopy experiments.
Abstract: We report the use of a phase retrieval procedure based on maximum likelihood estimation (MLE) to produce an improved, experimentally calibrated model of a point spread function (PSF) for use in three-dimensional (3D) localization microscopy experiments. The method estimates a global pupil phase function (which includes both the PSF and system aberrations) over the full axial range from a simple calibration scan. The pupil function is used to refine the PSF model and hence enable superior localizations from experimental data. To demonstrate the utility of the procedure, we apply it to experimental data acquired with a microscope employing a tetrapod PSF with a 6 µm axial range. The phase-retrieved model demonstrates significant improvements in both accuracy and precision of 3D localizations relative to the model based on scalar diffraction theory. The localization precision of the phase-retrieved model is shown to be near the limits imposed by estimation theory, and the reproducibility of the procedure is characterized and discussed. Code which performs the phase retrieval algorithm is provided.

61 citations


Journal ArticleDOI
21 Jul 2017
TL;DR: High-resolution-CLEAN-SC takes advantage of the fact that source components can likewise be derived from points at some distance from the peak, as long as these ‘source markers’ are on the main lobe of the point spread function.
Abstract: In this article, a high-resolution extension of CLEAN-SC is proposed: high-resolution-CLEAN-SC Where CLEAN-SC uses peak sources in ‘dirty maps’ to define so-called source components, high-resolution-CLEAN-SC takes advantage of the fact that source components can likewise be derived from points at some distance from the peak, as long as these ‘source markers’ are on the main lobe of the point spread function This is very useful when sources are closely spaced together, such that their point spread functions interfere Then, alternative markers can be sought in which the relative influence by point spread functions of other source locations is minimised For those markers, the source components agree better with the actual sources, which allows for better estimation of their locations and strengths This article outlines the theory needed to understand this approach and discusses applications to 2D and 3D microphone array simulations with closely spaced sources An experimental validation was performed with two closely spaced loudspeakers in an anechoic chamber

60 citations


Journal ArticleDOI
Chuanlong Xu1, Wenchao Zhao1, Hu Jianghai1, Biao Zhang1, Shimin Wang1 
15 May 2017-Fuel
TL;DR: In this paper, the authors proposed a novel optical sectioning tomography for the measurement of three-dimensional temperature of flame through a single camera in combination with an ionic electrowetting-based variable focus liquid lens.

Journal ArticleDOI
TL;DR: It is confirmed that ultrafast Doppler imaging can be achieved with reduced performances when compared against the equivalent 2D matrix, and OPW compound imaging using emulated RCA matrix can achieve a power doppler with sufficient contrast to recover the vein shape and provides an accurate Dopplers spectrum.
Abstract: 4D ultrafast ultrasound imaging was recently shown using a 2D matrix (i.e. fully populated) connected to a 1024-channel ultrafast ultrasound scanner. In this study, we investigate the row-column addressing (RCA) matrix approach, which allows a reduction of independent channels from N × N to N + N, with a dedicated beamforming strategy for ultrafast ultrasound imaging based on the coherent compounding of orthogonal plane wave (OPW). OPW is based on coherent compounding of plane wave transmissions in one direction with receive beamforming along the orthogonal direction and its orthogonal companion sequence. Such coherent recombination of complementary orthogonal sequences leads to the virtual transmit focusing in both directions which results into a final isotropic point spread function (PSF). In this study, a 32 × 32 2D matrix array probe (1024 channels), centered at 5 MHz was considered. An RCA array, of same footprint with 32 + 32 elements (64 channels), was emulated by summing the elements either along a line or a column in software prior to beamforming. This approach allowed for the direct comparison of the 32 + 32 RCA scheme to the optimal fully sampled 32 × 32 2D matrix configuration, which served as the gold standard. This approach was first studied through PSF simulations and then validated experimentally on a phantom consisting of anechoic cysts and echogenic wires. The contrast-to-noise ratio and the lateral resolution of the RCA approach were found to be approximately equal to half (in decibel) and twice the values, respectively, obtained when using the 2D matrix approach. Results in a Doppler phantom and the human humeral artery in vivo confirmed that ultrafast Doppler imaging can be achieved with reduced performances when compared against the equivalent 2D matrix. Volumetric anatomic Doppler rendering and voxel-based pulsed Doppler quantification are presented as well. OPW compound imaging using emulated RCA matrix can achieve a power Doppler with sufficient contrast to recover the vein shape and provides an accurate Doppler spectrum.

Journal ArticleDOI
20 Sep 2017
TL;DR: This work introduces a new class of superoscillation waveform—which consists of a diffraction-limited hotspot surrounded by low-energy superoscillating sidelobe ripples that enables superresolution imaging for complex objects over a larger viewing area while maintaining a practical level of sensitivity.
Abstract: Superoscillation is a phenomenon where a wave oscillates locally faster than its highest Fourier component. While previous reports have shown attractive possibilities for a superoscillation-based far-field superresolution imaging device, it has also been recognized that a high-energy “sideband” region coexists with the superresolution features. This sideband causes strong restrictions and necessitates trade-offs in achievable resolution, viewing area, and sensitivity of the imaging device. In this work, we introduce a new class of superoscillation waveform—which consists of a diffraction-limited hotspot surrounded by low-energy superoscillating sidelobe ripples. This waveform alleviates the aforementioned trade-off and enables superresolution imaging for complex objects over a larger viewing area while maintaining a practical level of sensitivity. Using this waveform as the point spread function of an imaging system, we demonstrate the successful superresolution of Latin letters without performing scanning and/or post-processing operations.

Journal ArticleDOI
TL;DR: Analytical expressions are derived for the point spread function (PSF) that describes the radial distribution of the inelastic scattering of 60-300keV electrons in a thin specimen, for energy losses below 50eV where the delocalization length exceeds atomic dimensions.

Journal ArticleDOI
TL;DR: This paper addresses the code optimization problem for general tomography imaging based on the point spread function (PSF) of the system, which is used as a measure of the sensing matrix quality which connects to the restricted isometry property (RIP) and coherence of theensing matrix.
Abstract: Coded aperture X-ray computed tomography (CT) has the potential to revolutionize X-ray tomography systems in medical imaging and air and rail transit security - both areas of global importance. It allows either a reduced set of measurements in X-ray CT without degradation in image reconstruction, or measure multiplexed X-rays to simplify the sensing geometry. Measurement reduction is of particular interest in medical imaging to reduce radiation, and airport security often imposes practical constraints leading to limited angle geometries. Coded aperture compressive X-ray CT places a coded aperture pattern in front of the X-ray source in order to obtain patterned projections onto a detector. Compressive sensing (CS) reconstruction algorithms are then used to recover the image. To date, the coded illumination patterns used in conventional CT systems have been random. This paper addresses the code optimization problem for general tomography imaging based on the point spread function (PSF) of the system, which is used as a measure of the sensing matrix quality which connects to the restricted isometry property (RIP) and coherence of the sensing matrix. The methods presented are general, simple to use, and can be easily extended to other imaging systems. Simulations are presented where the peak signal to noise ratios (PSNR) of the reconstructed images using optimized coded apertures exhibit significant gain over those attained by random coded apertures. Additionally, results using real X-ray tomography projections are presented.

Journal ArticleDOI
De Cai1, Zhongfei Li1, Yao Li1, Zhendong Guo1, Sung-Liang Chen1 
TL;DR: The results suggest that SAFT+Deconv ARPAM may allow fine spatial resolution with deep penetration and extended depth of focus (DOF) for biomedical photoacoustic applications.
Abstract: Acoustic-resolution photoacoustic microscopy (ARPAM) plays an important role in studying the microcirculation system of biological tissues with deep penetration. High lateral resolution of ARPAM is achieved by using a high numerical aperture acoustic transducer. The deteriorated lateral resolution in the out-of-focus region can be alleviated by synthetic aperture focusing technique (SAFT). Previously, we reported a three-dimensional (3D) deconvolution ARPAM to improve both lateral and axial resolutions in the focus region. In this study, we present our extension of resolution enhancement to the out-of-focus region based on two-dimensional SAFT combined with the 3D deconvolution (SAFT+Deconv). In both the focus and out-of-focus regions, depth-independent lateral resolution provided by SAFT, together with inherently depth-independent axial resolution, ensures a depth-independent point spread function for 3D deconvolution algorithm. Imaging of 10 μm polymer beads shows that SAFT+Deconv ARPAM improves the -6 dB lateral resolutions from 65-700 μm to 20-29 μm, and the -6 dB axial resolutions from 35-42 μm to 12-19 μm in an extended depth of focus (DOF) of ∼2 mm. The signal-to-noise ratio is also increased by 6-30 dB. The resolution enhancement in three dimensions is validated by in vivo imaging of a mouse's dorsal subcutaneous microvasculature. Our results suggest that SAFT+Deconv ARPAM may allow fine spatial resolution with deep penetration and extended DOF for biomedical photoacoustic applications.

Journal ArticleDOI
TL;DR: The results show that there exists a limit above which deconvolution microscopy becomes superior to SIM and the effect of the sample movement on the reconstruction quality and the number of raw frames recordable.
Abstract: A theoretical framework for widefield structured illumination microscopy (SIM) reconstruction from fewer than the commonly used nine raw frame acquisitions is introduced and applied in silico and in vitro. The proposed scheme avoids the recording of redundant spatial frequency components, which was necessary in previous SIM algorithms. This allows for gentler superresolution imaging at faster speeds. A doubling of frame rates is possible solely via changes in the computational reconstruction procedure. Furthermore, we explore numerically the effect of the sample movement on the reconstruction quality and the number of raw frames recordable. Our results show that there exists a limit above which deconvolution microscopy becomes superior to SIM.

Journal ArticleDOI
TL;DR: The results show that the ETCC performs exactly as the geometrical optics predicts, demonstrates its versatility in the field radiation measurement, and reveals potentials for application in many fields, including the nuclear industry, medical field, and astronomy.
Abstract: We have developed an Electron Tracking Compton Camera (ETCC), which provides a well-defined Point Spread Function (PSF) by reconstructing a direction of each gamma as a point and realizes simultaneous measurement of brightness and spectrum of MeV gamma-rays for the first time. Here, we present the results of our on-site pilot gamma-imaging-spectroscopy with ETCC at three contaminated locations in the vicinity of the Fukushima Daiichi Nuclear Power Plants in Japan in 2014. The obtained distribution of brightness (or emissivity) with remote-sensing observations is unambiguously converted into the dose distribution. We confirm that the dose distribution is consistent with the one taken by conventional mapping measurements with a dosimeter physically placed at each grid point. Furthermore, its imaging spectroscopy, boosted by Compton-edge-free spectra, reveals complex radioactive features in a quantitative manner around each individual target point in the background-dominated environment. Notably, we successfully identify a “micro hot spot” of residual caesium contamination even in an already decontaminated area. These results show that the ETCC performs exactly as the geometrical optics predicts, demonstrates its versatility in the field radiation measurement, and reveals potentials for application in many fields, including the nuclear industry, medical field, and astronomy.

Journal ArticleDOI
TL;DR: An advanced optical configuration of coded aperture correlation holography (COACH) with a diffractive objective lens is presented and four-dimensional imaging of objects at the three spatial dimensions and with an additional spectral dimension is demonstrated.
Abstract: In this Letter, we present an advanced optical configuration of coded aperture correlation holography (COACH) with a diffractive objective lens. Four-dimensional imaging of objects at the three spatial dimensions and with an additional spectral dimension is demonstrated. A hologram of three-dimensional objects illuminated by different wavelengths was recorded by the interference of light diffracted from the objects with the light diffracted from the same objects, but through a random-like coded phase mask (CPM). A library of holograms denoted point spread function (PSF) holograms were prerecorded with the same CPM, and under identical conditions, using point objects along different axial locations and for the different illuminating wavelengths. The correlation of the object hologram with the PSF hologram recorded using a particular wavelength, and at a particular axial location, reconstructs only the object corresponding to the particular axial plane and to the specific wavelength. The reconstruction results are compared with regular imaging and with another well-established holographic technique called Fresnel incoherent correlation holography.

Journal ArticleDOI
TL;DR: A high-speed method to image objects through a thin scattering medium and around a corner to extract the point spread function of the scatterer from a dynamic scene that includes a static reference object, and use this to image the dynamic objects.
Abstract: We demonstrate a high-speed method to image objects through thin scattering media and around corners. The method employs a reference object of known shape to retrieve the speckle-like point spread function of the scatterer. We extract the point spread function of the scatterer from a dynamic scene that includes a static reference object and uses this to image the dynamic objects. Sharp images are reconstructed from the transmission through a diffuser and from the reflection off a rough surface. The sharp and clean reconstructed images from single shot data exemplify the robustness of the method.

Journal ArticleDOI
TL;DR: The best scatter mitigation strategy was found to be a combination of a grid with selectivity larger than 9, combined with iterative scatter estimation, and none of the investigated grids required increasing the imaging dose.
Abstract: Purpose CBCT has been widely adopted in clinical practice for image-guided radiotherapy Soft tissue contrast and Hounsfield units are impaired to presence of scattered radiation In our previous work we proposed a high selectivity anti-scatter grid (ASG) as a possible solution to the problem An alternative approach is the application of iterative scatter correction using deconvolution with scatter point spread function (PSF) The purpose of this work was to compare the performance of ASGs with different selectivity with and without the iterative and uniform scatter corrections in terms of CBCT image quality A secondary objective of this study was to develop a novel measurement approach to measure the scatter point spread functions Methods The scatter PSF was modeled as a sum of two bivariate Gaussian functions The PSF parameters were estimated from a series of transmission measurements through polystyrene slabs of varying thickness with lead partial beam-blocker for three different anti-scatter grid designs ranging from low (56), medium (9) and high (11) selectivity The scatter correction scheme is based on iterative convolution of the current estimate of the primary with the scatter PSF until the root mean square deviation of the measured projection and the sum of the estimate of primary and scatter falls below a pre-defined threshold The image quality was evaluated with the CIRS CBCT Image Quality and Electron Density phantom in a head and neck and pelvis configuration and the CIRS Virtual Male Human Patient The image quality was quantified by the contrast-to-noise ratio (CNR) relative to the uncorrected scans and the root mean square deviation (RMSD) of the average gray values for different regions with respect to the nominal Hounsfield units and the mean difference of the reconstructed HU between the planning CT and CBCTs of the virtual human phantom Results For the head and neck phantom, the CNR increased with more advanced scatter correction algorithm and the ASG selectivity, reaching 39, 37, 35 and 31 for the high, medium, light and with no grid configuration respectively combined with the iterative software correction The same is true for the pelvis phantom with CNR improvement reaching 15 for the heavy and medium grid, 13 for the light grid and 11 on its own The HU RMSD for the head and neck phantom was 22 HU, 13 HU, 12 HU, 6 HU for iterative correction without the grid, with the light grid, medium grid and the heavy grid, respectively For same correction strategies the values for the pelvis phantom where 170, 120, 34 and 27 HU The average difference with the PCT of the virtual human phantom were 59 ± 48 HU and 63 ± 59 HU with scans reconstructed with the iterative correction and two higher selectivity grids Visual inspection revealed similar trends for a head-and-neck and prostate cancer patient Conclusions The best scatter mitigation strategy was found to be a combination of a grid with selectivity larger than 9, combined with iterative scatter estimation None of the investigated grids required increasing the imaging dose The PSF determined using proposed method leads to image quality improvements results for all but one of the investigated scenarios This article is protected by copyright All rights reserved

Journal ArticleDOI
TL;DR: A generic SPM method is developed to consider the PSF effect in SPM and, thereby, to increase prediction accuracy and Experimental results on three separate datasets show that the SPM accuracy can be increased by considering thePSF effect.

Journal ArticleDOI
TL;DR: This work proposes a fast and accurate approximation of the Gibson-Lanni model, which has been shown to represent the PSF suitably under a variety of imaging conditions, and expresses the Kirchhoff's integral in this model as a linear combination of rescaled Bessel functions, thus providing an integral-free way for the calculation.
Abstract: The point spread function (PSF) plays a fundamental role in fluorescence microscopy. A realistic and accurately calculated PSF model can significantly improve the performance in 3D deconvolution microscopy and also the localization accuracy in single-molecule microscopy. In this work, we propose a fast and accurate approximation of the Gibson-Lanni model, which has been shown to represent the PSF suitably under a variety of imaging conditions. We express the Kirchhoff's integral in this model as a linear combination of rescaled Bessel functions, thus providing an integral-free way for the calculation. The explicit approximation error in terms of parameters is given numerically. Experiments demonstrate that the proposed approach results in a significantly smaller computational time compared with current state-of-the-art techniques to achieve the same accuracy. This approach can also be extended to other microscopy PSF models.

Journal ArticleDOI
TL;DR: In this paper, the authors used the combined resolving power of the Hubble Space Telescope and gravitational lensing to resolve star-forming structures in a z~2.5 galaxy on scales much smaller than the usual kiloparsec diffraction limit of HST.
Abstract: Using the combined resolving power of the Hubble Space Telescope and gravitational lensing, we resolve star-forming structures in a z~2.5 galaxy on scales much smaller than the usual kiloparsec diffraction limit of HST. SGAS J111020.0+645950.8 is a clumpy, star forming galaxy lensed by the galaxy cluster SDSS J1110+6459 at z = 0.659, with a total magnification ~30x across the entire arc. We use a hybrid parametric/non-parametric strong lensing mass model to compute the deflection and magnification of this giant arc, reconstruct the light distribution of the lensed galaxy in the source plane, and resolve the star formation into two dozen clumps. We develop a forward-modeling technique to model each clump in the source plane. We ray trace the model to the image plane, convolve with the instrumental point spread function (PSF), and compare with the GALFIT model of the clumps in the image plane, which decomposes clump structure from more extended emission. This technique has the advantage, over ray tracing, by accounting for the asymmetric lensing shear of the galaxy in the image plane and the instrument PSF. At this resolution, we can begin to study star formation on a clump-by-clump basis, toward the goal of understanding feedback mechanisms and the buildup of exponential disks at high redshift.

Journal ArticleDOI
TL;DR: This review can serve as a tutorial for X-ray imaging researchers and investigators to understand, operate, characterize, and optimize photon counting detectors for a variety of applications.
Abstract: Background Recent advances in photon counting detection technology have led to significant research interest in X-ray imaging. Objective As a tutorial level review, this paper covers a wide range of aspects related to X-ray photon counting detector characterization. Methods The tutorial begins with a detailed description of the working principle and operating modes of a pixelated X-ray photon counting detector with basic architecture and detection mechanism. Currently available methods and techniques for charactering major aspects including energy response, noise floor, energy resolution, count rate performance (detector efficiency), and charge sharing effect of photon counting detectors are comprehensively reviewed. Other characterization aspects such as point spread function (PSF), line spread function (LSF), contrast transfer function (CTF), modulation transfer function (MTF), noise power spectrum (NPS), detective quantum efficiency (DQE), bias voltage, radiation damage, and polarization effect are also remarked. Results A cadmium telluride (CdTe) pixelated photon counting detector is employed for part of the characterization demonstration and the results are presented. Conclusions This review can serve as a tutorial for X-ray imaging researchers and investigators to understand, operate, characterize, and optimize photon counting detectors for a variety of applications.

Journal ArticleDOI
TL;DR: The results prove that it is possible to conduct simultaneous 4D label-free quantitative imaging and optical manipulation of living cells, which is promising for the study of the cell biophysics and biology.
Abstract: The refractive index (RI) is an important optical characteristic that is often exploited in label-free microscopy for analysis of biological objects. A technique for 3D RI reconstruction of living cells has to be fast enough to capture the cell dynamics and preferably needs to be compatible with standard wide-field microscopes. To solve this challenging problem, we present a technique that provides fast measurement and processing of data required for real-time 3D visualization of the object RI. Specifically, the 3D RI is reconstructed from the measurement of bright-field intensity images, axially scanned by a high-speed focus tunable lens mounted in front of a sCMOS camera, by using a direct deconvolution approach designed for partially coherent light microscopy in the non-paraxial regime. Both the measurement system and the partially coherent illumination, that provides optical sectioning and speckle-noise suppression, enable compatibility with wide-field microscopes resulting in a competitive and affordable alternative to the current holographic laser microscopes. Our experimental demonstrations show video-rate 3D RI visualization of living bacteria both freely swimming and optically manipulated by using freestyle laser traps allowing for their trapping and transport along 3D trajectories. These results prove that is possible to conduct simultaneous 4D label-free quantitative imaging and optical manipulation of living cells, which is promising for the study of the cell biophysics and biology.

Journal ArticleDOI
TL;DR: Image formation in ISM can be considered in a four-dimensional spatial frequency space, giving new insight into the imaging properties, and a noniterative algorithm for image restoration is proposed.
Abstract: The effect of combining the image scanning microscopy (ISM) technique with two-photon fluorescence microscopy is analyzed. The effective spatial frequency cutoff can be doubled, as compared with conventional two-photon fluorescence microscopy, and the magnitude of the optical transfer function near the cutoff of conventional two-photon microscopy is increased by orders of magnitude. For the two-photon case, it is found that the optimum pixel reassignment factor in ISM is not equal to one half, as is often assumed in single-photon fluoresence image scanning microscopy, because the excitation and detection point spread functions are different. The optimum reassignment factor depends on the noise level, and in general the useful cutoff spatial frequency is about 1.8 times that for conventional two-photon microscopy. The effect of altering the reassignment factor in single-photon fluorescence ISM with a Stokes shift is also investigated. Illumination using pupil filters, such as by a Bessel beam, is considered. Using a ring detector array is found to result in good imaging behavior, exhibiting a sharpening of the point spread function by a factor of 1.7 compared with conventional fluorescence. Image formation in ISM can be considered in a four-dimensional spatial frequency space, giving new insight into the imaging properties. This approach is related to phase space representations such as the Wigner distribution function and the ambiguity function. A noniterative algorithm for image restoration is proposed.

Journal ArticleDOI
01 Mar 2017
TL;DR: Light-field imaging and holographic imaging are currently the two mostly investigated 3-D imaging technologies because of their potentials to create the viewing environment conforming to a natural viewing condition.
Abstract: Light-field imaging and holographic imaging are currently the two mostly investigated 3-D imaging technologies because of their potentials to create the viewing environment conforming to a natural viewing condition. The basic optical geometries for image display in these imaging are not different from that of integral photography. The images in the two type of imaging are a set of different view images. These images are arranged as a 2-D point image array, and each point image is expanded with a certain angle to form a viewing zone. The differences between the two types of imaging are the number of point images in the array and the physical entities forming the images. Holographic imaging has many more point images than light-field imaging, and each image in the array consists of coherent right rays from different positions of an object. In light-field imaging, an array of pixels represents a direction view of the object. Despite these differences, they share the same goal of providing a continuous parallax to viewers and require display panels of almost the same characteristics. It is expected that in the future these two imaging techniques will be integrated into the same flat panel along with the plane image.

Journal ArticleDOI
TL;DR: In this paper, a phase-diversity speckle imaging scheme was proposed to estimate the pupil function and the PSF of a highly scattering imaging system without any guide-star nor reference.
Abstract: Recently introduced angular-memory-effect based techniques enable non-invasive imaging of objects hidden behind thin scattering layers. However, both the speckle-correlation and the bispectrum analysis are based on the statistical average of large amounts of speckle grains, which determines that they can hardly access the important information of the point-spread-function (PSF) of a highly scattering imaging system. Here, inspired by notions used in astronomy, we present a phase-diversity speckle imaging scheme, based on recording a sequence of intensity speckle patterns at various imaging planes, and experimentally demonstrate that in addition to being able to retrieve diffraction-limited image of hidden objects, phase-diversity can also simultaneously estimate the pupil function and the PSF of a highly scattering imaging system without any guide-star nor reference.

Journal ArticleDOI
TL;DR: An endoscopic μOCT probe with an extended DOF is reported by using a binary phase spatial filter and the feasibility of clinical use was demonstrated by ex vivo imaging of the rabbit iliac artery.
Abstract: Micro-optical coherence tomography (μOCT) is an advanced imaging technique that acquires a three-dimensional microstructure of biological samples with a high spatial resolution, up to 1 μm, by using a broadband light source and a high numerical aperture (NA) lens. As high NA produces a short depth of focus (DOF), extending the DOF is necessary to obtain a reasonable imaging depth. However, due to the complexity of optics and the limited space, it has been challenging to fabricate endoscopic μOCT, which is essential for clinical translation. Here, we report an endoscopic μOCT probe with an extended DOF by using a binary phase spatial filter. The imaging results from latex beads demonstrated that the μOCT probe achieved an axial resolution of 2.49 μm and a lateral resolution of 2.59 μm with a DOF extended by a factor of 2. The feasibility of clinical use was demonstrated by ex vivo imaging of the rabbit iliac artery.