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Pseudomonas putida
About: Pseudomonas putida is a research topic. Over the lifetime, 6854 publications have been published within this topic receiving 230572 citations.
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TL;DR: Kinetic analyses revealed that 2,3-dioxygenase preparations from toluene-grown cells of Pseudomonas putida catalyzed the stoichiometric oxidation of 3-methylcatechol to 2-hydroxy-6-oxohepta-2,4-dienoate and 3-chlorocatechol were noncompetitive or mixed-type inhibitors of the enzyme.
Abstract: Partially purified preparations of catechol 2,3-dioxygenase from toluene-grown cells of Pseudomonas putida catalyzed the stoichiometric oxidation of 3-methylcatechol to 2-hydroxy-6-oxohepta-2,4-dienoate. Other substrates oxidized by the enzyme preparation were catechol, 4-methylcatechol, and 4-fluorocatechol. The apparent Michaelis constants for 3-methylcatechol and catechol were 10.6 and 22.0 muM, respectively. Substitution at the 4-position decreases the affinity and activity of the enzyme for the substrate. Catechol 2,3-dioxygenase preparations did not oxidize 3-chlorocatechol. In addition, incubation of the enzyme with 3-chlorocatechol led to inactivation of the enzyme. Kinetic analyses revealed that both 3-chlorocatechol and 4-chlorocatechol were noncompetitive or mixed-type inhibitors of the enzyme. 3-Chlorocatechol (Ki = 0.14 muM) was a more potent inhibitor than 4-chlorocatechol (Ki = 50 muM). The effect of the ion-chelating agents Tiron and o-phenanthrolene were compared with that of 3-chlorocatechol on the inactivation of the enzyme. Each inhibitor appeared to remove iron from the enzyme, since inactive enzyme preparations could be fully reactivated by treatment with ferrous iron and a reducing agent.
211 citations
TL;DR: Genes and their organization are conserved in the replication origin region of the bacterial chromosome in Bacillus subtilis and Pseudomonas putida and five additional ORFs were found in between the conserved genes, suggesting that they were added after Gram‐positive bacteria were diverged from the Gram‐negative bacteria.
Abstract: Genes and their organization are conserved in the replication origin region of the bacterial chromosome. To determine the extent of the conserved region in Gram-positive and Gram-negative bacteria, which diverged 1.2 billion years ago, we have further sequenced the region upstream from the dnaA genes in Bacillus subtilis and Pseudomonas putida. Fifteen open reading frames (ORFs) and 11 ORFs were identified in the 13.6 kb and the 9.8 kb fragments in B. subtilis and P. putida, respectively. Eight consecutive P. putida genes, except for one small ORF (homologous to gene 9K of Escherichia coli) in between, are homologous in sequence and relative locations to genes in B. subtilis. Altogether, 12 genes and their organization are conserved in B. subtilis and P. putida in the origin region. We found that the conserved region terminated on one side after the orf290 in P. putida (orf282 in B. subtilis). In the B. subtilis chromosome, five additional ORFs were found in between the conserved genes, suggesting that they are added after Gram-positive bacteria were diverged from the Gram-negative bacteria. One of the ORFs is a duplicate of the conserved gene. The third non-translatable region containing multiple repeats of DnaA-box (second in the case of P. putida) was found flanking gidA in both organisms. This result shows clearly that E. coli oriC and flanking genes gidA and gidB have been translocated by the inversion of some 40 kb fragment.
211 citations
TL;DR: It is indicated that a single genetic pathway controls the metabolism of dibenzothiophene, naphthalene, and phenanthrene in strain C18 and that the DOX sequence encodes a complete upper naphhalene catabolic pathway similar to NAH.
Abstract: From a soil isolate, Pseudomonas strain C18, we cloned and sequenced a 9.8-kb DNA fragment that encodes dibenzothiophene-degrading enzymes. Nine open reading frames were identified and designated doxABDEFGHIJ. Collectively, we refer to these genes as the DOX pathway. At the nucleotide level, doxABD are identical to the ndoABC genes that encode naphthalene dioxygenase of Pseudomonas putida. The DoxG protein is 97% identical to NahC (1,2-dihydroxynaphthalene dioxygenase) of P. putida. DoxE has 37% identity with cis-toluene dihydrodiol dehydrogenase. DoxF is similar to the aldehyde dehydrogenases of many organisms. The predicted DoxHIJ proteins have no obvious sequence similarities to known proteins. Gas chromatography with a flame ionization detector and mass spectroscopy confirmed that the DOX proteins convert naphthalene to salicylate and converting phenanthrene to 1-hydroxy-2-naphthoic acid. doxI mutants convert naphthalene to trans-o-hydroxybenzylidenepyruvate, indicating that the DoxI protein is similar to NahE (trans-o-hydroxybenzylidenepyruvate hydratase-aldolase). Comparison of the DOX sequence with restriction maps of cloned naphthalene catabolic pathway (NAH) genes revealed many conserved restriction sites. The DOX gene arrangement is identical to that proposed for NAH, except that the NAH equivalent of doxH has not been recognized. DoxH may be involved in the conversion of 2-hydroxy-4-(2'-oxo-3,5-cyclohexadienyl)-buta-2,4-dienoat e to cis-o-hydroxybenzylidenepyruvate. doxJ encodes an enzyme similar to NahD (isomerase). Our findings indicate that a single genetic pathway controls the metabolism of dibenzothiophene, naphthalene, and phenanthrene in strain C18 and that the DOX sequence encodes a complete upper naphthalene catabolic pathway similar to NAH.
209 citations
TL;DR: The authors showed that toluene is sensed by Pseudomonas putida KT2440 cells as a stressor rather than as a nutrient and that the inhibition by the aromatic compounds of many functions was the tradeoff for activating stress tolerance genes at a minimal cost in terms of energy.
208 citations
TL;DR: This study enabled us to select an ideal combination of efficient Rhizobium strain and PGPR for pigeonpea grown in the semiarid tropics.
Abstract: Plant-growth promoting rhizobacteria (PGPR), in conjuction with efficient Rhizobium, can affect the growth and nitrogen fixation in pigeonpea by inducing the occupancy of introduced Rhizobium in the nodules of the legume. This study assessed the effect of different plant-growth promoting rhizobacteria (Azotobacter chroococcum, Azospirillum brasilense, Pseudomonas fluorescens, Pseudomonas putida and Bacillus cereus) on pigeonpea (Cajanus cajan (L) Milsp.) cv. P-921 inoculated with Rhizobium sp. (AR-2-2 k). A glasshouse experiment was carried out with a sandy-loam soil in which the seeds were treated with Rhizobium alone or in combination with several PGPR isolates. It was monitored on the basis of nodulation, N 2 fixation, shoot biomass, total N content in shoot and legume grain yield. The competitive ability of the introduced Rhizobium strain was assessed by calculating nodule occupancy. The PGPR isolates used did not antagonize the introduced Rhizobium strain and the dual inoculation with either Pseudomonas putida, P. fluorescens or Bacillus cereus resulted in a significant increase in plant growth, nodulation and enzyme activity over Rhizobium-inoculated and uninoculated control plants. The nodule occupancy of the introduced Rhizobium strain increased from 50% (with Rhizobium alone) to 85% in the presence of Pseudomonas putida. This study enabled us to select an ideal combination of efficient Rhizobium strain and PGPR for pigeonpea grown in the semiarid tropics.
208 citations