Pseudomonas putida

About: Pseudomonas putida is a research topic. Over the lifetime, 6854 publications have been published within this topic receiving 230572 citations.

PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains.

Abstract: Degenerate PCR primers, UP-1 and UP-2r, for the amplification of DNA gyrase subunit B genes (gyrB) were designed by using consensus amino acid sequences of gyrases from Escherichia coli, Pseudomonas putida, and Bacillus subtilis. In addition to the degenerate sequences, these primers have sequences at the 5' end which allow direct sequencing of amplified PCR products. With these primers, DNA segments of the predicted size were amplified from a variety of gram-negative and gram-positive genera. The nucleotide sequences of the amplified gyrB DNA from three P. putida strains were determined directly from the amplified fragments. The base substitution frequency of gyrB between the strains of P. putida was much higher than that of the 16S rRNA gene. With a specific set of PCR primers, it was possible to amplify gyrB fragments selectively from P. putida or its subgroups. The direct sequencing method of gyrB developed in this study provides a rapid and convenient system for bacterial identification, taxonomic analysis, and monitoring of bacteria in the natural environment.

Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid.

Abstract: Pseudomonas putida (arvilla) mt-2 carries genes for the catabolism of toluene, m-xylene, and p-xylene on a transmissible plasmid, TOL. These compounds are degraded by oxidation of one of the methyl substituents via the corresponding alcohols and aldehydes to benzoate and m- and p-toluates, respectively, which are then further metabolised by the meta pathway, also coded for by the TOL plasmid. The specificities of the benzyl alcohol dehydrogenase and the benzaldehyde dehydrogenase for their three respective substrates are independent of the carbon source used for growth, suggesting that a single set of nonspecific enzymes is responsible for the dissimilation of the breakdown products of toluene and m- and p-xylene. Benzyl alcohol dehydrogenase and benzaldehyde dehydrogenase are coincidently and possible coordinately induced by toluene and the xylenes, and by the corresponding alcohols and aldehydes. They are not induced in cells grown on m-toluate but catechol 2,3-oxygenase can be induced by m-xylene.

Growth stimulation and fruit yield improvement of greenhouse tomato plants by inoculation with pseudomonas putida or Trichoderma atroviride: Possible role of indole acetic acid (IAA)

Abstract: Five bacteria (Pseudomonas fluorescens, P. fluorescens subgroup G strain 2, P. marginalis, P. putida subgroup B strain 1 and P. syringae strain 1) and three fungi (Penicillium brevicompactum, P. solitum strain 1 and Trichoderma atroviride) were evaluated to determine their promoting effect on the growth of mature healthy tomato plants grown under hydroponic conditions. P. putida and T. atroviride were shown to improve fruit yields in rockwool and in organic medium. The production or degradation of indole acetic acid (IAA) by the two microorganisms was investigated as possible mechanisms for plant growth stimulation. Both P. putida and T. atroviride were shown to produce IAA. The production of IAA by the two microorganisms was stimulated in vitro by the addition of l -tryptophan, tryptamine and tryptophol (200 μg ml−1) in the culture medium. P. putida and T. atroviride also increased the fresh weight of both the shoot and the roots of tomato seedlings grown in the presence of increasing concentrations of l -tryptophan (up to 0.75 mM). Both microorganisms showed partial degradation of IAA in vitro when grown in a minimal medium with or without sucrose. In addition, the capacity of these microorganisms to reduce the deleterious effect of exogenous IAA was investigated using tomato seedlings. The results showed that the roots of tomato seedlings grown in the presence of increasing concentrations of IAA (0–10 μg ml−1) were significantly longer when seeds were previously treated with P. putida or T. atroviride. The reduction in the detrimental effect of IAA on root elongation could be associated with a reduced ethylene production resulting from a decrease of its precursor 1-aminocyclopropane-1-carboxylic acid (ACC) by microbial degradation of IAA in the rhizosphere and/or by ACC deaminase activity present in both microorganisms.