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RAPD

About: RAPD is a research topic. Over the lifetime, 15960 publications have been published within this topic receiving 360391 citations.


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Journal ArticleDOI
TL;DR: It is concluded that DNA alterations detected by RAPD analysis offered a useful biomarker assay for the evaluation of genotoxic effects of Hg, B, Cr and Zn pollutions on plants.

101 citations

Journal ArticleDOI
TL;DR: DNA markers linked to a root-knot nematode resistance gene derived from wild peanut species have been identified and different distributions of resistance in the BC5F2 progeny and TxAG-7 suggest the presence of additional resistance genes in TxAg-7.
Abstract: DNA markers linked to a root-knot nematode resistance gene derived from wild peanut species have been identified. The wild diploid peanut accessions K9484 (Arachis batizocoi Krapov. & W. C. Gregory), GKP10017, (A. cardenasii Krapov & W. C. Gregory), and GKP10602 (A. diogoi Hoehne) possess genes for ressitance to Meloidogyne arenaria. These three accessions and A. hypogaea cv. Florunner were crossed to generate the hybrid resistant breeding line TxAg-7. This line was used as donor parent to develop a BC4F2 population segregating for resistance. Three RAPD markers associated with nematode resistance were identified in this population by bulked segregant analysis. Linkage was confirmed by screening 21 segregatingh BC4F2 and 63 BC5F2 single plants. Recombination between marker RKN410 and resistance, and between marker RKN440 and resistance, was estimated to be 5.4±1.9% and 5.8±2.1%, respectively, on a per-generation basis. These two markers identified a resistance gene derived from either A. cardenasii or A. diogoi, and were closely linked to each other. Recombination between a third marker, RKN229, inherited from A. cardenasii or A. diogoi, and resistance was 9.0±3.2% per generation. Markers RKN410 and RKN229 appeared to be linked genetically and flank the same resistance gene. All markers were confirmed by hybridization of cloned or gel-purified marker DNA to blots of PCR-amplified DNA. Pooled data on the segregation of BC5F2 plants was consistent with the presence of one resistance gene in the advanced breeding lines. Different distributions of resistance in the BC5F2 progeny and TxAG-7 suggest the presence of additional resistance genes in TxAG-7.

101 citations

Journal ArticleDOI
TL;DR: The regeneration protocol based on somatic embryogenesis set up for oil palm clonal propagation does not induce any gross genetic changes and the RAPD approach is not suitable for the detection of the "mantled" variant phenotype.
Abstract: Random amplified polymorphic DNA (RAPD) analysis using arbitrary 10-mer oligonucleotide primers was employed in order to investigate the genetic fidelity of somatic embryogenesis-derived regenerants of oil palm (#Elaeis guineensis# Jacq). Clonal palms bearing the "mantled" phenotype were identified in the field and the ability of RAPD markers to distinguish these variants from palms of the normal type was assessed. Of the 387 arbitrary primers used, 259 (67%) were successfully used to amplify oil palm DNA genomic fragments with consistently reproducible banding. Of these 387 primers, 73 (19%) primers enabled the identification of polymorphism between clones. No intraclonal variability and no differences between mother palms and regenerants could be identified using the total number of markers scored (8900). Twenty-four of these 73 primers were chosen for use in a larger experiment aimed at comparing, first, the mother palm genome with that of its clonal offspring and, second, true-to-type and variant regenerants. Thus, the regeneration protocol based on somatic embryogenesis set up for oil palm clonal propagation does not induce any gross genetic changes. The results obtained revealed however, that the RAPD approach is not suitable for the detection of the "mantled" variant phenotype. The use of RAPD markers for the detection of somaclonal variation in oil palm is discussed. (Resume d'auteur)

101 citations

Journal ArticleDOI
01 Dec 1999-Genetics
TL;DR: Due to the short generation time, advantages of haplodiploidy, and availability of markers, Nasonia promises to be a productive system for investigating the genetics of hybrid inviability.
Abstract: According to theory, F(2) hybrid breakdown (lethality or sterility) is due to incompatibilities between interacting genes of the different species (i.e., the breaking up of coadapted gene complexes). Detection of such incompatibilities is particularly straightforward in haplodiploid species, because virgin F(1) hybrid females will produce haploid recombinant F(2) males. This feature allows for screening of the complete genome for recessive genetic incompatibilities. Crosses were performed between Nasonia vitripennis (v) and its sibling species N. giraulti (g). First, a linkage map was produced using RAPD markers. RAPD markers showed an overall bias toward vitripennis alleles, a pattern not predicted by the basic two-interactor Dobzhansky-Muller model. Recovery patterns of visible markers were consistent with those of linked RAPD markers. If particular genetic interactions between two loci are causing hybrid lethality, then those genotypes should be underrepresented or absent among adult F(2) males. Four sets of significant incompatibilities were detected by performing pairwise comparisons of markers on different chromosomes. Likely explanations for the observed patterns are maternal effect-zygotic gene incompatibilities or clustering of incompatibility loci. Due to the short generation time, advantages of haplodiploidy, and availability of markers, Nasonia promises to be a productive system for investigating the genetics of hybrid inviability.

101 citations

Journal ArticleDOI
TL;DR: Collection and conservation strategies have been devised for coconut germplasm in the South Pacific region based on existing genetic diversity, and this continuum could be divided into discrete groups by cluster analysis.
Abstract: The South Pacific region represents a large potential genetic resource for improvement of coconut palms (Cocos nucifera L.). A study of the genetic diversity in the species was made in 1992-1993 by means of RAPD analysis on a representative sample from 17 distinct South Pacific coconut populations to characterize the germplasm present in the region. A moderate level of genetic diversity was found, although very few RAPD markers were unique to specific populations. Approximately 60% of the observed diversity occurred within-populations, but this level varied between the various populations. This indicated the generally low but variable influence of gene migration between populations, the establishment of populations by few individuals that comprised a fraction of the genetic variation of their parental populations (founder effects), and subsequent selection by the local human population. Although the coconut populations of the region generally displayed a pattern of continuous variation, this continuum could be divided into discrete groups by cluster analysis. This division comprised a southern group of populations, a northern-eastern group, and single-population groups from the Marquesas and Hawaii groups. The population from Rennell Island diverged from the main genetic continuum, apparently because of isolation and artificial selection. Collection and conservation strategies have been devised for coconut germplasm in the South Pacific region based on existing genetic diversity.

101 citations


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Performance
Metrics
No. of papers in the topic in previous years
YearPapers
20241
2023149
2022309
2021152
2020195
2019246