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RAPD

About: RAPD is a research topic. Over the lifetime, 15960 publications have been published within this topic receiving 360391 citations.


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Journal ArticleDOI
TL;DR: New genetic loci of the potato genome that contribute to resistance to late blight are revealed and it is postulate that some of these loci could be related to plant growth under short-day conditions.
Abstract: Field resistance to late blight – a fungal disease caused by Phytophthora infestans – has been genetically characterized by analyzing trait-marker association in a Solanum phureja (phu)×dihaploid Solanum tuberosum (dih-tbr) population. Trait data were developed at three locations over a 3-year period under natural infection pressure. RAPD (random amplified polymorphic DNA) and AFLP (amplified fragment length polymorphism)markers were used to develop anonymous genetic linkage groups subsequently anchored to potato chromosomes using mapped RFLP (restriction fragment length polymorphism), SSR (single sequence repeats) and AFLP markers. RFLP and SSR markers achieved the most-accurate anchoring. Two genetic maps were obtained, with 987.4 cM for phu and 773.7 cM for dih-tbr. Trait-marker association was revealed by single-marker and interval mapping analyses. Two important QTLs (quantitative trait loci) were detected on chromosomes VII and XII as a contribution from both parents, totalling up to 16% and 43%, respectively, of the phenotypic variation (PH). One additional QTL was detected on chromosome XI (up to 11% of the PH) as a contribution from the phu parent, and three others were detected on chromosome III (up to 13% of the PH), chromosome V (up to 11% of the PH) and chromosome VIII (up to 11% of the PH) as a contribution from the dih-tbr parent. Our results reveal new genetic loci of the potato genome that contribute to resistance to late blight. We postulate that some of these loci could be related to plant growth under short-day conditions.

86 citations

Journal ArticleDOI
TL;DR: Molecular and population parameters compared well and represented a sensitive means to measure toxicity induced by copper in Daphnia magna, and the age-specific fecundity and net reproductive rate were the most sensitive parameters of toxicity.

86 citations

Journal ArticleDOI
TL;DR: The uniqueness of Greek melon landraces portends their potential usefulness for the enhancement of U.S., European, and Asian melon market classes.
Abstract: Diversity among 17 melon landraces and inbred lines of Group Cantalupensis, Inodorus, and Flexuosus germplasm from Greece was assessed using 24 RAPD primers, 11 morphological traits of fruit, two yield-related characteristics, and resistance to powdery mildew. Accessions were genetically diverse and the greatest variation was detected in Group Flexuosus. Comparative analysis of Greek germplasm and an array of previously characterized reference accessions [RA; 68 from Africa (15), United States (U.S.; 5), Central Europe (14), Japan (19), and Spain (15)], spanning major market classes employing 19 RAPD primers (standard marker array), indicates that all but one of the accessions from Greece showed genetic affinities among themselves and with 23 RA of various origin (i.e., Japan, U.S., Central Europe, Spain and Israel) and market class. Accessions from Greece were, however, distinct from the African landraces and most Spanish melons. Greek accessions also showed little genetic affinity with the Casabas (Blanco and Crenshaw), Ogen, and U.S. Eastern Market accessions. Group Flexuosus and Inodorus accessions from Greece possessed genetic affinities with Western Asian (Group Conomon) and Mediterranean (Group Inodorus) market classes, respectively. The uniqueness of Greek melon landraces portends their potential usefulness for the enhancement of U.S., European, and Asian melon market classes.

86 citations

Journal ArticleDOI
TL;DR: In this paper, the authors sought evidence for new environmental sources of Cryptococcus neoformans var. gattii by random amplification of polymorphic DNA (RAPD) analysis of isolates from 29 animals with a restricted territorial range in five Australian states.
Abstract: We sought evidence for new environmental sources of Cryptococcus neoformans var. gattii by random amplification of polymorphic DNA (RAPD) analysis of isolates from 29 animals with a restricted territorial range in five Australian states. Twenty-three of the 29 isolates and 45 of 45 eucalypt isolates tested previously exhibited one RAPD profile, VGI. RAPD profile VGII was identified in 6 of 17 isolates from domesticated species but in none of 12 native species. Four VGII isolates originated from an area of Western Australia with no natural stands of known eucalypt host, indicating the existence of at least one unrecognized natural source of C. neoformans var. gattii.

86 citations

Journal ArticleDOI
TL;DR: Analysis of RAPD variation showed that C. incisum is the most similar perennial species to annuals, and C. reticulatum is the closest annual species to chickpea, generally agreeing with the allozyme study.
Abstract: Random amplified polymorphic DNA (RAPD) fragments were used to assess genetic relationships among Cicer spp. growing in Turkey. Seven 10-mer primers selected from a 50 random oligonucleotide primer set, depending on their ability to amplify genomic DNA in all species, were used to detect RAPD variation in 43 wild and cultivated accessions representing ten species. These primers yielded 95 reproducible amplification products, 92 of which were polymorphic. Pairwise genetic distances of accessions estimated according to Nei and Li (1979) were used to produce a dendrogram using UPGMA. The dendrogram contained two main clusters, one of which comprised accessions of the four perennial species (Cicer montbretii, Cicer isauricum, Cicer anatolicum and Cicer incisum) together with the accessions of the three annual species (Cicer pinnatifidum, Cicer judaicum and Cicer bijugum), and the other cluster included the remaining three annual species (Cicer echinospermum, Cicer reticulatum and Cicer arietinum). Analysis of RAPD variation showed that C. incisum is the most similar perennial species to annuals, and C. reticulatum is the closest annual species to chickpea. These results generally agree with our allozyme study which was carried out using same Cicer collection and previous studies of relationships among annual species. The results also show that RAPD markers can be used to distinguish Cicer species and to survey genetic variation and relationships among taxonomic units in this genus.

86 citations


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Performance
Metrics
No. of papers in the topic in previous years
YearPapers
20241
2023149
2022309
2021152
2020195
2019246