Skyline

About: Skyline is a research topic. Over the lifetime, 1916 publications have been published within this topic receiving 35600 citations.

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Abstract: Summary: Skyline is a Windows client application for targeted proteomics method creation and quantitative data analysis. It is open source and freely available for academic and commercial use. The Skyline user interface simplifies the development of mass spectrometer methods and the analysis of data from targeted proteomics experiments performed using selected reaction monitoring (SRM). Skyline supports using and creating MS/MS spectral libraries from a wide variety of sources to choose SRM filters and verify results based on previously observed ion trap data. Skyline exports transition lists to and imports the native output files from Agilent, Applied Biosystems, Thermo Fisher Scientific and Waters triple quadrupole instruments, seamlessly connecting mass spectrometer output back to the experimental design document. The fast and compact Skyline file format is easily shared, even for experiments requiring many sample injections. A rich array of graphs displays results and provides powerful tools for inspecting data integrity as data are acquired, helping instrument operators to identify problems early. The Skyline dynamic report designer exports tabular data from the Skyline document model for in-depth analysis with common statistical tools. Availability: Single-click, self-updating web installation is available at http://proteome.gs.washington.edu/software/skyline. This web site also provides access to instructional videos, a support board, an issues list and a link to the source code project.

The Skyline operator

Abstract: We propose to extend database systems by a Skyline operation. This operation filters out a set of interesting points from a potentially large set of data points. A point is interesting if it is not dominated by any other point. For example, a hotel might be interesting for somebody traveling to Nassau if no other hotel is both cheaper and closer to the beach. We show how SSL can be extended to pose Skyline queries, present and evaluate alternative algorithms to implement the Skyline operation, and show how this operation can be combined with other database operations, e.g., join.

Progressive skyline computation in database systems

Abstract: The skyline of a d-dimensional dataset contains the points that are not dominated by any other point on all dimensions. Skyline computation has recently received considerable attention in the database community, especially for progressive methods that can quickly return the initial results without reading the entire database. All the existing algorithms, however, have some serious shortcomings which limit their applicability in practice. In this article we develop branch-and-bound skyline (BBS), an algorithm based on nearest-neighbor search, which is I/O optimal, that is, it performs a single access only to those nodes that may contain skyline points. BBS is simple to implement and supports all types of progressive processing (e.g., user preferences, arbitrary dimensionality, etc). Furthermore, we propose several interesting variations of skyline computation, and show how BBS can be applied for their efficient processing.

Shooting stars in the sky: an online algorithm for skyline queries

Abstract: Skyline queries ask for a set of interesting points from a potentially large set of data points. If we are traveling, for instance, a restaurant might be interesting if there is no other restaurant which is nearer, cheaper, and has better food. Skyline queries retrieve all such interesting restaurants so that the user can choose the most promising one. In this paper, we present a new online algorithm that computes the Skyline. Unlike most existing algorithms that compute the Skyline in a batch, this algorithm returns the first results immediately, produces more and more results continuously, and allows the user to give preferences during the running time of the algorithm so that the user can control what kind of results are produced next (e.g., rather cheap or rather near restaurants).

An optimal and progressive algorithm for skyline queries

Abstract: The skyline of a set of d-dimensional points contains the points that are not dominated by any other point on all dimensions. Skyline computation has recently received considerable attention in the database community, especially for progressive (or online) algorithms that can quickly return the first skyline points without having to read the entire data file. Currently, the most efficient algorithm is NN (nearest neighbors), which applies the divide -and-conquer framework on datasets indexed by R-trees. Although NN has some desirable features (such as high speed for returning the initial skyline points, applicability to arbitrary data distributions and dimensions), it also presents several inherent disadvantages (need for duplicate elimination if d>2, multiple accesses of the same node, large space overhead). In this paper we develop BBS (branch-and-bound skyline), a progressive algorithm also based on nearest neighbor search, which is IO optimal, i.e., it performs a single access only to those R-tree nodes that may contain skyline points. Furthermore, it does not retrieve duplicates and its space overhead is significantly smaller than that of NN. Finally, BBS is simple to implement and can be efficiently applied to a variety of alternative skyline queries. An analytical and experimental comparison shows that BBS outperforms NN (usually by orders of magnitude) under all problem instances.