Showing papers on "Soil organic matter published in 2010"

Potential mechanisms for achieving agricultural benefits from biochar application to temperate soils: a review

Abstract: Natural organic biomass burning creates black carbon which forms a considerable proportion of the soil’s organic carbon. Due to black carbon’s aromatic structure it is recalcitrant and has the potential for long-term carbon sequestration in soil. Soils within the Amazon-basin contain numerous sites where the ‘dark earth of the Indians’ (Terra preta de Indio, or Amazonian Dark Earths (ADE)) exist and are composed of variable quantities of highly stable organic black carbon waste (‘biochar’). The apparent high agronomic fertility of these sites, relative to tropical soils in general, has attracted interest. Biochars can be produced by ‘baking’ organic matter under low oxygen (‘pyrolysis’). The quantities of key mineral elements within these biochars can be directly related to the levels of these components in the feedstock prior to burning. Their incorporation in soils influences soil structure, texture, porosity, particle size distribution and density. The molecular structure of biochars shows a high degree of chemical and microbial stability. A key physical feature of most biochars is their highly porous structure and large surface area. This structure can provide refugia for beneficial soil micro-organisms such as mycorrhizae and bacteria, and influences the binding of important nutritive cations and anions. This binding can enhance the availability of macro-nutrients such as N and P. Other biochar soil changes include alkalisation of soil pH and increases in electrical conductivity (EC) and cation exchange capacity (CEC). Ammonium leaching has been shown to be reduced, along with N2O soil emissions. There may also be reductions in soil mechanical impedance. Terra preta soils contain a higher number of ‘operational taxonomic units’ and have highly distinctive microbial communities relative to neighbouring soils. The potential importance of biochar soil incorporation on mycorrhizal fungi has also been noted with biochar providing a physical niche devoid of fungal grazers. Improvements in soil field capacity have been recorded upon biochar additions. Evidence shows that bioavailability and plant uptake of key nutrients increases in response to biochar application, particularly when in the presence of added nutrients. Depending on the quantity of biochar added to soil significant improvements in plant productivity have been achieved, but these reports derive predominantly from studies in the tropics. As yet there is limited critical analysis of possible agricultural impacts of biochar application in temperate regions, nor on the likelihood of utilising such soils as long-term sites for carbon sequestration. This review aims to determine the extent to which inferences of experience mostly from tropical regions could be extrapolated to temperate soils and to suggest areas requiring study.

Priming effects : interactions between living and dead organic matter

Abstract: In this re-evaluation of our 10-year old paper on priming effects, I have considered the latest studies and tried to identify the most important needs for future research. Recent publications have shown that the increase or decrease in soil organic matter mineralization (measured as changes of CO 2 efflux and N mineralization) actually results from interactions between living (microbial biomass) and dead organic matter. The priming effect (PE) is not an artifact of incubation studies, as sometimes supposed, but is a natural process sequence in the rhizosphere and detritusphere that is induced by pulses or continuous inputs of fresh organics. The intensity of turnover processes in such hotspots is at least one order of magnitude higher than in the bulk soil. Various prerequisites for high-quality, informative PE studies are outlined: calculating the budget of labeled and total C; investigating the dynamics of released CO 2 and its sources; linking C and N dynamics with microbial biomass changes and enzyme activities; evaluating apparent and real PEs; and assessing PE sources as related to soil organic matter stabilization mechanisms. Different approaches for identifying priming, based on the assessment of more than two C sources in CO 2 and microbial biomass, are proposed and methodological and statistical uncertainties in PE estimation and approaches to eliminating them are discussed. Future studies should evaluate directions and magnitude of PEs according to expected climate and land-use changes and the increased rhizodeposition under elevated CO 2 as well as clarifying the ecological significance of PEs in natural and agricultural ecosystems. The conclusion is that PEs – the interactions between living and dead organic matter – should be incorporated in models of C and N dynamics, and that microbial biomass should regarded not only as a C pool but also as an active driver of C and N turnover.

Soil beneficial bacteria and their role in plant growth promotion: a review

Abstract: Soil bacteria are very important in biogeochemical cycles and have been used for crop production for decades. Plant–bacterial interactions in the rhizosphere are the determinants of plant health and soil fertility. Free-living soil bacteria beneficial to plant growth, usually referred to as plant growth promoting rhizobacteria (PGPR), are capable of promoting plant growth by colonizing the plant root. PGPR are also termed plant health promoting rhizobacteria (PHPR) or nodule promoting rhizobacteria (NPR). These are associated with the rhizosphere, which is an important soil ecological environment for plant–microbe interactions. Symbiotic nitrogen-fixing bacteria include the cyanobacteria of the genera Rhizobium, Bradyrhizobium, Azorhizobium, Allorhizobium, Sinorhizobium and Mesorhizobium. Free-living nitrogen-fixing bacteria or associative nitrogen fixers, for example bacteria belonging to the species Azospirillum, Enterobacter, Klebsiella and Pseudomonas, have been shown to attach to the root and efficiently colonize root surfaces. PGPR have the potential to contribute to sustainable plant growth promotion. Generally, PGPR function in three different ways: synthesizing particular compounds for the plants, facilitating the uptake of certain nutrients from the soil, and lessening or preventing the plants from diseases. Plant growth promotion and development can be facilitated both directly and indirectly. Indirect plant growth promotion includes the prevention of the deleterious effects of phytopathogenic organisms. This can be achieved by the production of siderophores, i.e. small metal-binding molecules. Biological control of soil-borne plant pathogens and the synthesis of antibiotics have also been reported in several bacterial species. Another mechanism by which PGPR can inhibit phytopathogens is the production of hydrogen cyanide (HCN) and/or fungal cell wall degrading enzymes, e.g., chitinase and s-1,3-glucanase. Direct plant growth promotion includes symbiotic and non-symbiotic PGPR which function through production of plant hormones such as auxins, cytokinins, gibberellins, ethylene and abscisic acid. Production of indole-3-ethanol or indole-3-acetic acid (IAA), the compounds belonging to auxins, have been reported for several bacterial genera. Some PGPR function as a sink for 1-aminocyclopropane-1-carboxylate (ACC), the immediate precursor of ethylene in higher plants, by hydrolyzing it into α-ketobutyrate and ammonia, and in this way promote root growth by lowering indigenous ethylene levels in the micro-rhizo environment. PGPR also help in solubilization of mineral phosphates and other nutrients, enhance resistance to stress, stabilize soil aggregates, and improve soil structure and organic matter content. PGPR retain more soil organic N, and other nutrients in the plant–soil system, thus reducing the need for fertilizer N and P and enhancing release of the nutrients.

Reduction of forest soil respiration in response to nitrogen deposition

Abstract: The use of fossil fuels and fertilizers has increased the amount of biologically reactive nitrogen in the atmosphere over the past century. As a consequence, forests in industrialized regions have experienced greater rates of nitrogen deposition in recent decades. This unintended fertilization has stimulated forest growth, but has also affected soil microbial activity, and thus the recycling of soil carbon and nutrients. A meta-analysis suggests that nitrogen deposition impedes organic matter decomposition, and thus stimulates carbon sequestration, in temperate forest soils where nitrogen is not limiting microbial growth. The concomitant reduction in soil carbon emissions is substantial, and equivalent in magnitude to the amount of carbon taken up by trees owing to nitrogen fertilization. As atmospheric nitrogen levels continue to rise, increased nitrogen deposition could spread to older, more weathered soils, as found in the tropics; however, soil carbon cycling in tropical forests cannot yet be assessed.

Visible and Near Infrared Spectroscopy in Soil Science

Abstract: This chapter provides a review on the state of soil visible–near infrared (vis–NIR) spectroscopy Our intention is for the review to serve as a source of up-to-date information on the past and current role of vis–NIR spectroscopy in soil science It should also provide critical discussion on issues surrounding the use of vis–NIR for soil analysis and on future directions To this end, we describe the fundamentals of visible and infrared diffuse reflectance spectroscopy and spectroscopic multivariate calibrations A review of the past and current role of vis–NIR spectroscopy in soil analysis is provided, focusing on important soil attributes such as soil organic matter (SOM), minerals, texture, nutrients, water, pH, and heavy metals We then discuss the performance and generalization capacity of vis–NIR calibrations, with particular attention on sample pretratments, covariations in data sets, and mathematical data preprocessing Field analyses and strategies for the practical use of vis–NIR are considered We conclude that the technique is useful to measure soil water and mineral composition and to derive robust calibrations for SOM and clay content Many studies show that we also can predict properties such as pH and nutrients, although their robustness may be questioned For future work we recommend that research should focus on: (i) moving forward with more theoretical calibrations, (ii) better understanding of the complexity of soil and the physical basis for soil reflection, and (iii) applications and the use of spectra for soil mapping and monitoring, and for making inferences about soils quality, fertility and function To do this, research in soil spectroscopy needs to be more collaborative and strategic The development of the Global Soil Spectral Library might be a step in the right direction

Phenol oxidase, peroxidase and organic matter dynamics of soil

Abstract: Extracellular enzymes mediate the degradation, transformation and mineralization of soil organic matter. The activity of cellulases, phosphatases and other hydrolases has received extensive study and in many cases stoichiometric relationships and responses to disturbances are well established. In contrast, phenol oxidase and peroxidase activities, which are often uncorrelated with hydrolase activities, have been measured in only a small subset of soil enzyme studies. These enzymes are expressed for a variety of purposes including ontogeny, defense and the acquisition of carbon and nitrogen. Through excretion or lysis, these enzymes enter the environment where their aggegrate activity mediates key ecosystem functions of lignin degradation, humification, carbon mineralization and dissolved organic carbon export. Phenol oxidases and peroxidases are less stable in the environment than extracellular hydrolases, especially when associated with organic particles. Activities are also affected, positively and negatively, by interaction with mineral surfaces. High spatiotemporal variation obscures their relationships with environmental variables and ecological process. Across ecosystems, phenol oxidase and peroxidase activities generally increase with soil pH, a finding not predicted from the pH optima of purified enzymes. Activities associated with plant litter and particulate organic matter often correlate with decomposition rates and potential activities generally increase with the lignin and secondary compound content of the material. At the ecosystem scale, nitrogen amendment alters the expression of phenol oxidase and peroxidase enzymes more broadly than culture studies imply and these responses correlate with positive and negative changes in litter decomposition rates and soil organic matter content. At the global scale, N amendment of basidiomycete-dominated soils of temperate and boreal forest ecoystems often leads to losses of oxidative enzyme activity, while activities in grassland soils dominated by glomeromycota and ascomycetes show little net response. Land use that leads to loss of soil organic matter tends to increase oxidative activities. Across ecosystems, soil organic matter content is not correlated with mean potential phenol oxidase and peroxidase activities. A multiple regression model that includes soil pH, mean annual temperature, mean annual precipitation and potential phenol oxidase activity accounts for 37% of the variation in soil organic matter (SOM) content across ecosystems (n = 63); a similar model for peroxidase activity describes 32% of SOM variance (n = 43). Analysis of residual variation suggest that suites of interacting factors create both positive and negative feedbacks on soil organic matter storage. Soils with high oxygen availability, pH and mineral activity tend to be substrate limited: high in situ oxidative activities limit soil organic matter accumulation. Soils with opposing characteristics are activity limited: low in situ oxidative activities promote soil organic matter storage.

Long-term effects of organic amendments on soil fertility. A review

Abstract: Common agricultural practices such as excessive use of agro-chemicals, deep tillage and luxury irrigation have degraded soils, polluted water resources and contaminated the atmosphere. There is increasing concern about interrelated environmental problems such as soil degradation, desertification, erosion, and accelerated greenhouse effects and climate change. The decline in organic matter content of many soils is becoming a major process of soil degradation, particularly in European semi-arid Mediterranean regions. Degraded soils are not fertile and thus cannot maintain sustainable production. At the same time, the production of urban and industrial organic waste materials is widespread. Therefore, strategies for recycling such organic waste in agriculture must be developed. Here, we review long-term experiments (3-60 years) on the effects of organic amendments used both for organic matter replenishment and to avoid the application of high levels of chemical fertilizers. The major points of our analysis are: (1) many effects, e.g. carbon sequestration in the soil and possible build-up of toxic elements, evolve slowly, so it is necessary to refer to long-term trials. (2) Repeated application of exogenous organic matter to cropland led to an improvement in soil biological functions. For instance, microbial biomass carbon increased by up to 100% using high-rate compost treatments, and enzymatic activity increased by 30% with sludge addition. (3) Long-lasting application of organic amendments increased organic carbon by up to 90% versus unfertilized soil, and up to 100% versus chemical fertilizer treatments. (4) Regular addition of organic residues, particularly the composted ones, increased soil physical fertility, mainly by improving aggregate stability and decreasing soil bulk density. (5) The best agronomic performance of compost is often obtained with the highest rates and frequency of applications. Furthermore, applying these strategies, there were additional beneficial effects such as the slow release of nitrogen fertilizer. (6) Crop yield increased by up to 250% by long-term applications of high rates of municipal solid waste compost. Stabilized organic amendments do not reduce the crop yield quality, but improve it. (7) Organic amendments play a positive role in climate change mitigation by soil carbon sequestration, the size of which is dependent on their type, the rates and the frequency of application. (8) There is no tangible evidence demonstrating negative impacts of heavy metals applied to soil, particularly when high-quality compost was used for long periods. (9) Repeated application of composted materials enhances soil organic nitrogen content by up to 90%, storing it for mineralization in future cropping seasons, often without inducing nitrate leaching to groundwater.

The use of chronosequences in studies of ecological succession and soil development

Abstract: Summary 1. Chronosequences and associated space-for-time substitutions are an important and often necessary tool for studying temporal dynamics of plant communities and soil development across multiple time-scales. However, they are often used inappropriately, leading to false conclusions about ecological patterns and processes, which has prompted recent strong criticism of the approach. Here, we evaluate when chronosequences may or may not be appropriate for studying community and ecosystem development. 2. Chronosequences are appropriate to study plant succession at decadal to millennial time-scales when there is evidence that sites of different ages are following the same trajectory. They can also be reliably used to study aspects of soil development that occur between temporally linked sites over time-scales of centuries to millennia, sometimes independently of their application to shorter-term plant and soil biological communities. 3. Some characteristics of changing plant and soil biological communities (e.g. species richness, plant cover, vegetation structure, soil organic matter accumulation) are more likely to be related in a predictable and temporally linear manner than are other characteristics (e.g. species composition and abundance) and are therefore more reliably studied using a chronosequence approach. 4. Chronosequences are most appropriate for studying communities that are following convergent successional trajectories and have low biodiversity, rapid species turnover and low frequency and severity of disturbance. Chronosequences are least suitable for studying successional trajectories that are divergent, species-rich, highly disturbed or arrested in time because then there are often major difficulties in determining temporal linkages between stages. 5. Synthesis. We conclude that, when successional trajectories exceed the life span of investigators and the experimental and observational studies that they perform, temporal change can be successfully explored through the judicious use of chronosequences.

An investigation into the reactions of biochar in soil

Abstract: Interactions between biochar, soil, microbes, and plant roots may occur within a short period of time after application to the soil. The extent, rates, and implications of these interactions, however, are far from understood. This review describes the properties of biochars and suggests possible reactions that may occur after the addition of biochars to soil. These include dissolution-precipitation, adsorption-desorption, acid-base, and redox reactions. Attention is given to reactions occurring within pores, and to interactions with roots, microorganisms, and soil fauna. Examination of biochars (from chicken litter, greenwaste, and paper mill sludges) weathered for 1 and 2 years in an Australian Ferrosol provides evidence for some of the mechanisms described in this review and offers an insight to reactions at a molecular scale. These interactions are biochar- and site-specific. Therefore, suitable experimental trials—combining biochar types and different pedoclimatic conditions—are needed to determine the extent to which these reactions influence the potential of biochar as a soil amendment and tool for carbon sequestration.

Litter decomposition: what controls it and how can we alter it to sequester more carbon in forest soils?

Abstract: Key recent developments in litter decomposition research are reviewed. Long-term inter-site experiments indicate that temperature and moisture influence early rates of litter decomposition primarily by determining the plants present, suggesting that climate change effects will be small unless they alter the plant forms present. Thresholds may exist at which single factors control decay rate. Litter decomposes faster where the litter type naturally occurs. Elevated CO2 concentrations have little effect on litter decomposition rates. Plant tissues are not decay-resistant; it is microbial and biochemical transformations of materials into novel recalcitrant compounds rather than selective preservation of recalcitrant compounds that creates stable organic matter. Altering single characteristics of litter will not substantially alter decomposition rates. Nitrogen addition frequently leads to greater stabilization into humus through a combination of chemical reactions and enzyme inhibition. To sequester more C in soil, we need to consider not how to slow decomposition, but rather how to divert more litter into humus through microbial and chemical reactions rather than allowing it to decompose. The optimal strategy is to have litter transformed into humic substances and then chemically or physically protected in mineral soil. Adding N through fertilization and N-fixing plants is a feasible means of stimulating humification.

Carbon accumulation in agricultural soils after afforestation: a meta-analysis.

Abstract: Deforestation usually results in significant losses of soil organic carbon (SOC). The rate and factors determining the recovery of this C pool with afforestation are still poorly understood. This paper provides a review of the influence of afforestation on SOC stocks based on a meta-analysis of 33 recent publications (totaling 120 sites and 189 observations), with the aim of determining the factors responsible for the restoration of SOC following afforestation. Based on a mixed linear model, the meta-analysis indicates that the main factors that contribute to restoring SOC stocks after afforestation are: previous land use, tree species planted, soil clay content, preplanting disturbance and, to a lesser extent, climatic zone. Specifically, this meta-analysis (1) indicates that the positive impact of afforestation on SOC stocks is more pronounced in cropland soils than in pastures or natural grasslands; (2) suggests that broadleaf tree species have a greater capacity to accumulate SOC than coniferous species; (3) underscores that afforestation using pine species does not result in a net loss of the whole soil-profile carbon stocks compared with initial values (agricultural soil) when the surface organic layer is included in the accounting; (4) demonstrates that clay-rich soils (> 33%) have a greater capacity to accumulate SOC than soils with a lower clay content (< 33%); (5) indicates that minimizing preplanting disturbances may increase the rate at which SOC stocks are replenished; and (6) suggests that afforestation carried out in the boreal climate zone results in small SOC losses compared with other climate zones, probably because trees grow more slowly under these conditions, although this does not rule out gains over time after the conversion. This study also highlights the importance of the methodological approach used when developing the sampling design, especially the inclusion of the organic layer in the accounting.

The impact of agricultural soil erosion on biogeochemical cycling

Abstract: Soils are the main terrestrial reservoir of nutrients, such as nitrogen and phosphorus, and of organic carbon. Synthesizing earlier studies, we find that the mobilization and deposition of agricultural soils can significantly alter nutrient and carbon cycling. Specifically, erosion can result in lateral fluxes of nitrogen and phosphorus that are similar in magnitude to those induced by fertilizer application and crop removal. Furthermore, the translocation and burial of soil reduces decomposition of soil organic carbon, and could lead to long-term carbon storage. The cycling of carbon, nitrogen and phosphorus are strongly interrelated. For example, erosion-induced burial of soils stabilizes soil nutrient and carbon pools, thereby increasing primary productivity and carbon uptake, and potentially reducing erosion. Our analysis shows soils as dynamic systems in time and space.

Stoichiometric controls on carbon, nitrogen, and phosphorus dynamics in decomposing litter

Abstract: The mineralization of nitrogen and phosphorus from plant residues provides an important input of inorganic nutrients to the soil, which can be taken up by plants. The dynamics of nutrient mineralization or immobilization during decomposition are controlled by different biological and physical factors. Decomposers sequester carbon and nutrients from organic substrates and exchange inorganic nutrients with the environment to maintain their stoichiometric balance. Additionally, physical losses of organic compounds from leaching and other processes may alter the nutrient content of litter. In this work, we extend a stoichiometric model of litter nitrogen mineralization to include (1) phosphorus mineralization, (2) physical losses of organic nutrients, and (3) chemical heterogeneity of litter substrates. The enhanced model provides analytical mineralization curves for nitrogen and phosphorus as well as critical litter carbon : nutrient ratios (the carbon : nutrient ratios below which net nutrient release occurs) as a function of the elemental composition of the decomposers, their carbon-use efficiency, and the rate of physical loss of organic compounds. The model is used to infer the critical litter carbon : nutrient ratios from observed nitrogen and phosphorus dynamics in about 2600 litterbag samplings from 21 decomposition data sets spanning artic to tropical ecosystems. At the beginning of decomposition, nitrogen and phosphorus tend to be immobilized in boreal and temperate climates (i.e., both C:N and C:P critical ratios are lower than the initial ratios), while in tropical areas nitrogen is generally released and phosphorus may be either immobilized or released, regardless of the typically low phosphorus concentrations. The critical carbon : nutrient ratios we observed were found to increase with initial litter carbon : nutrient ratios, indicating that decomposers adapt to low-nutrient conditions by reducing their carbon-use efficiency. This stoichiometric control on nutrient dynamics appears ubiquitous across climatic regions and ecosystems, although other biological and physical processes also play important roles in litter decomposition. In tropical humid conditions, we found high critical C:P ratios likely due to high leaching and low decomposer phosphorus concentrations. In general, the compound effects of stoichiometric constraints and physical losses explain most of the variability in critical carbon : nutrient ratios and dynamics of nutrient immobilization and release at the global scale.

A global perspective on belowground carbon dynamics under nitrogen enrichment

Abstract: Ecology Letters (2010) 13: 819–828 Abstract Nitrogen (N) effects on ecosystem carbon (C) budgets are critical to understand as C sequestration is considered as a mechanism to offset anthropogenic CO2 emissions. Interactions between aboveground C and N cycling are more clearly characterized than belowground processes. Through synthesizing data from multiple terrestrial ecosystems, we quantified the responses of belowground C cycling under N addition. We found that N addition increased litter input from aboveground (+20%) but not from fine root. N addition inhibited microbial activity as indicated by a reduction in microbial respiration (−8%) and microbial biomass carbon (−20%). Although soil respiration was not altered by N addition, dissolved organic carbon concentration was increased by 18%, suggesting C leaching loss may increase. N addition increased the C content of the organic layer (+17%) but not the mineral soil layer. Overall, our meta-analysis indicates that N addition will increase short term belowground C storage by increasing C content of organic layer. However, it is difficult to predict the response of long term C sequestration since there is no significant change in mineral soil C content.

Effect of fertilizer application on soil heavy metal concentration.

Abstract: A large amount of chemicals is annually applied at the agricultural soils as fertilizers and pesticides. Such applications may result in the increase of heavy metals particularly Cd, Pb, and As. The objective of this study was to investigate the variability of chemical applications on Cd, Pb, and As concentrations of wheat-cultivated soils. Consequently, a study area was designed and was divided into four subareas (A, B, C, and D). The soil sampling was carried out in 40 points of cultivated durum wheat during the 2006-2007 periods. The samples were taken to the laboratory to measure their heavy metal concentration, soil texture, pH, electrical conductivity, cationic exchange capacity, organic matter, and carbonate contents. The result indicated that Cd, Pb, and As concentrations were increased in the cultivated soils due to fertilizer application. Although the statistical analysis indicates that these heavy metals increased significantly (P value<0.05), the lead and arsenic concentrations were increased dramatically compared to Cd concentration. This can be related to overapplication of fertilizers as well as the pesticides that are used to replant plant pests, herbs, and rats.

Soil processes affecting crop production in salt-affected soils

Abstract: Salts can be deposited in the soil from wind and rain, as well as through the weathering of rocks. These processes, combined with the influence of climatic and landscape features and the effects of human activities, determine where salt accumulates in the landscape. When the accumulated salt in soil layers is above a level that adversely affects crop production, choosing salt-tolerant crops and managing soil salinity are important strategies to boost agricultural economy. Worldwide, more than 800 million hectares of soils are salt-affected, with a range of soils defined as saline, acidic–saline, alkaline–saline, acidic saline–sodic, saline–sodic, alkaline saline–sodic, sodic, acidic–sodic and alkaline–sodic. The types of salinity based on soil and groundwater processes are groundwater-associated salinity (dryland salinity), transient salinity (dry saline land) and irrigation salinity. This short review deals with the soil processes in the field that determine the interactions between root-zone environments and plant responses to increased osmotic pressure or specific ion concentrations. Soil water dynamics, soil structural stability, solubility of compounds in relation to pH and pE and nutrient and water movement all play vital roles in the selection and development of plants tolerant to salinity.

A global model of carbon, nitrogen and phosphorus cycles for the terrestrial biosphere

Abstract: . Carbon storage by many terrestrial ecosystems can be limited by nutrients, predominantly nitrogen (N) and phosphorus (P), in addition to other environmental constraints, water, light and temperature. However the spatial distribution and the extent of both N and P limitation at the global scale have not been quantified. Here we have developed a global model of carbon (C), nitrogen (N) and phosphorus (P) cycles for the terrestrial biosphere. Model estimates of steady state C and N pool sizes and major fluxes between plant, litter and soil pools, under present climate conditions, agree well with various independent estimates. The total amount of C in the terrestrial biosphere is 2767 Gt C, and the C fractions in plant, litter and soil organic matter are 19%, 4% and 77%. The total amount of N is 135 Gt N, with about 94% stored in the soil, 5% in the plant live biomass, and 1% in litter. We found that the estimates of total soil P and its partitioning into different pools in soil are quite sensitive to biochemical P mineralization. The total amount of P (plant biomass, litter and soil) excluding occluded P in soil is 17 Gt P in the terrestrial biosphere, 33% of which is stored in the soil organic matter if biochemical P mineralization is modelled, or 31 Gt P with 67% in soil organic matter otherwise. This model was used to derive the global distribution and uncertainty of N or P limitation on the productivity of terrestrial ecosystems at steady state under present conditions. Our model estimates that the net primary productivity of most tropical evergreen broadleaf forests and tropical savannahs is reduced by about 20% on average by P limitation, and most of the remaining biomes are N limited; N limitation is strongest in high latitude deciduous needle leaf forests, and reduces its net primary productivity by up to 40% under present conditions.

Fate of lignins in soils: A review

Abstract: Lignins are amongst the most studied macromolecules in natural environments. During the last decades, lignins were considered as important components for the carbon cycle in soils, and particularly for the carbon storage. Thus, they are an important variable in many soil–plant models such as CENTURY and RothC, and appeared determinant for the estimation of the soil organic matter (SOM) pool-size and its stabilization. Recent studies challenged this point of view. The aim of this paper was to synthesise the current knowledge and recent progress about quantity, composition and turnover of lignins in soils and to identify variables determining lignin residence time. In soils, lignins evolve under the influence of various variables and processes such as their degradation or mineralization, as well as their incorporation into SOM. Lignin-derived products obtained after CuO oxidation can be used as environmental biomarkers, and also vary with the degree of degradation of the molecule. The lignin degradation is related to the nature of vegetation and land-use, but also to the climate and soil characteristics. Lignin content of SOM decreases with decreasing size of the granulometric fractions, whereas its level of degradation increases concomitantly. Many studies and our results suggest the accumulation and potential stabilization of a part of lignins in soils, by interaction with the clay minerals, although the mechanisms remain unclear. Lignin turnover in soils could be faster than that of the total SOM. Different kinetic pools of lignins were suggested, which sizes seem to be variable for different soil types. The mechanisms behind different degradation kinetics as well as their potential stabilization behaviour still need to be elucidated.

Mitigating the greenhouse gas balance of ruminant production systems through carbon sequestration in grasslands

Abstract: Soil carbon sequestration (enhanced sinks) is the mechanism responsible for most of the greenhouse gas (GHG) mitigation potential in the agriculture sector. Carbon sequestration in grasslands can be determined directly by measuring changes in soil organic carbon (SOC) stocks and indirectly by measuring the net balance of C fluxes. A literature search shows that grassland C sequestration reaches on average 5 ± 30 g C/m2 per year according to inventories of SOC stocks and −231 and 77 g C/m2 per year for drained organic and mineral soils, respectively, according to C flux balance. Off-site C sequestration occurs whenever more manure C is produced by than returned to a grassland plot. The sum of on- and off-site C sequestration reaches 129, 98 and 71 g C/m2 per year for grazed, cut and mixed European grasslands on mineral soils, respectively, however with high uncertainty. A range of management practices reduce C losses and increase C sequestration: (i) avoiding soil tillage and the conversion of grasslands to arable use, (ii) moderately intensifying nutrient-poor permanent grasslands, (iii) using light grazing instead of heavy grazing, (iv) increasing the duration of grass leys; (v) converting grass leys to grass-legume mixtures or to permanent grasslands. With nine European sites, direct emissions of N2O from soil and of CH4 from enteric fermentation at grazing, expressed in CO2 equivalents, compensated 10% and 34% of the on-site grassland C sequestration, respectively. Digestion inside the barn of the harvested herbage leads to further emissions of CH4 and N2O by the production systems, which were estimated at 130 g CO2 equivalents/m2 per year. The net balance of on- and off-site C sequestration, CH4 and N2O emissions reached 38 g CO2 equivalents/m2 per year, indicating a non-significant net sink activity. This net balance was, however, negative for intensively managed cut sites indicating a source to the atmosphere. In conclusion, this review confirms that grassland C sequestration has a strong potential to partly mitigate the GHG balance of ruminant production systems. However, as soil C sequestration is both reversible and vulnerable to disturbance, biodiversity loss and climate change, CH4 and N2O emissions from the livestock sector need to be reduced and current SOC stocks preserved.

Dual role of lignin in plant litter decomposition in terrestrial ecosystems

Abstract: Plant litter decomposition is a critical step in the formation of soil organic matter, the mineralization of organic nutrients, and the carbon balance in terrestrial ecosystems. Biotic decomposition in mesic ecosystems is generally negatively correlated with the concentration of lignin, a group of complex aromatic polymers present in plant cell walls that is recalcitrant to enzymatic degradation and serves as a structural barrier impeding microbial access to labile carbon compounds. Although photochemical mineralization of carbon has recently been shown to be important in semiarid ecosystems, litter chemistry controls on photodegradative losses are not understood. We evaluated the importance of litter chemistry on photodegradation of grass litter and cellulose substrates with varying levels of lignin [cellulose-lignin (CL) substrates] under field conditions. Using wavelength-specific light attenuation filters, we found that light-driven mass loss was promoted by both UV and visible radiation. The spectral dependence of photodegradation correlated with the absorption spectrum of lignin but not of cellulose. Field incubations demonstrated that increasing lignin concentration reduced biotic decomposition, as expected, but linearly increased photodegradation. In addition, lignin content in CL substrates consistently decreased in photodegradative incubations. We conclude that lignin has a dual role affecting litter decomposition, depending on the dominant driver (biotic or abiotic) controlling carbon turnover. Under photodegradative conditions, lignin is preferentially degraded because it acts as an effective light-absorbing compound over a wide range of wavelengths. This mechanistic understanding of the role of lignin in plant litter decomposition will allow for more accurate predictions of carbon dynamics in terrestrial ecosystems.

Extracellular electron transfer through microbial reduction of solid-phase humic substances

Abstract: The decay of soil and sedimentary organic matter yields organic compounds with a high molecular weight, termed humic substances. Sediment-incubation experiments suggest that microbial reduction of solid-phase humics can accelerate iron(III) oxide reduction in wetland soils.

Using pedotransfer functions to estimate the van Genuchten-Mualem Soil Hydraulic Properties: a review.

Abstract: We reviewed the use of the van Genuchten–Mualem (VGM) model to parameterize soil hydraulic properties and for developing pedotransfer functions (PTFs). Analysis of literature data showed that the moisture retention characteristic (MRC) parameterization by setting shape parameters m = 1 − 1/ n produced the largest deviations between fitted and measured water contents for pressure head values between 330 (log10 pressure head [pF] 2.5) and 2500 cm (pF 3.4). The Schaap–van Genuchten model performed best in describing the unsaturated hydraulic conductivity, K . The classical VGM model using fixed parameters produced increasingly higher root mean squared residual, RMSR, values when the soil became drier. The most accurate PTFs for estimating the MRC were obtained when using textural properties, bulk density, soil organic matter, and soil moisture content. The RMSR values for these PTFs approached those of the direct fit, thus suggesting a need to improve both PTFs and the MRC parameterization. Inclusion of the soil water content in the PTFs for K only marginally improved their prediction compared with the PTFs that used only textural properties and bulk density. Including soil organic matter to predict K had more effect on the prediction than including soil moisture. To advance the development of PTFs, we advocate the establishment of databases of soil hydraulic properties that (i) are derived from standardized and harmonized measurement procedures, (ii) contain new predictors such as soil structural properties, and (iii) allow the development of time-dependent PTFs. Successful use of structural properties in PTFs will require parameterizations that account for the effect of structural properties on the soil hydraulic functions.

Carbon Sequestration in Agroforestry Systems

Abstract: Agroforestry—the practice of growing trees and crops in interacting combinations—is recognized worldwide as an integrated approach to sustainable land-use. It is estimated to be practiced over 1 billion hectares in developing countries, and to a lesser extent in the industrialized countries. Agroforestry systems (AFSs) are believed to have a higher potential to sequester carbon (C) because of their perceived ability for greater capture and utilization of growth resources (light, nutrients, and water) than single-species crop or pasture systems. The estimates of C stored in AFSs range from 0.29 to 15.21 Mg ha − 1 yr − 1 aboveground, and 30 to 300 Mg C ha − 1 up to 1-m depth in the soil. Recent studies under various AFSs in diverse ecological conditions showed that tree-based agricultural systems, compared to treeless systems, stored more C in deeper soil layers near the tree than away from the tree; higher soil organic carbon content was associated with higher species richness and tree density; and C3 plants (trees) contributed to more C in the silt- + clay-sized (