Showing papers on "Soil organic matter published in 2014"

Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage

Abstract: Ecosystem mycorrhizal type is shown to have a stronger effect on soil carbon storage than temperature, precipitation, clay content and primary production; ecosystems dominated by ectomycorrhizal and ericoid mycorrhizal fungi contain 70% more soil carbon per unit nitrogen than do ecosystems dominated by arbuscular mycorrhizal fungi. Ecosystems differ in the type of plant-associated mycorrhizal fungi (root symbionts associated with nearly all land plants) that dominate. Ectomycorrhiza and ericoid mycorrhizal (EEM) fungi produce nitrogen-degrading enzymes, whereas arbuscular mycorrhiza do not, leading to the prediction that plants in the EEM ecosystems will compete with decomposers for soil nitrogen and therefore increase soil carbon storage. These authors assemble a global data set to show that this is indeed the case, with 70% more carbon storage in EEM ecosystems than in ecosystems dominated by arbuscular mycorrhiza, and that mycorrhizal type is more important than other determinants of soil carbon storage levels. Soil contains more carbon than the atmosphere and vegetation combined1. Understanding the mechanisms controlling the accumulation and stability of soil carbon is critical to predicting the Earth’s future climate2,3. Recent studies suggest that decomposition of soil organic matter is often limited by nitrogen availability to microbes4,5,6 and that plants, via their fungal symbionts, compete directly with free-living decomposers for nitrogen6,7. Ectomycorrhizal and ericoid mycorrhizal (EEM) fungi produce nitrogen-degrading enzymes, allowing them greater access to organic nitrogen sources than arbuscular mycorrhizal (AM) fungi8,9,10. This leads to the theoretical prediction that soil carbon storage is greater in ecosystems dominated by EEM fungi than in those dominated by AM fungi11. Using global data sets, we show that soil in ecosystems dominated by EEM-associated plants contains 70% more carbon per unit nitrogen than soil in ecosystems dominated by AM-associated plants. The effect of mycorrhizal type on soil carbon is independent of, and of far larger consequence than, the effects of net primary production, temperature, precipitation and soil clay content. Hence the effect of mycorrhizal type on soil carbon content holds at the global scale. This finding links the functional traits of mycorrhizal fungi to carbon storage at ecosystem-to-global scales, suggesting that plant–decomposer competition for nutrients exerts a fundamental control over the terrestrial carbon cycle.

Soil C and N availability determine the priming effect: microbial N mining and stoichiometric decomposition theories

Abstract: The increasing input of anthropogenically derived nitrogen (N) to ecosystems raises a crucial question: how does available N modify the decomposer community and thus affects the mineralization of soil organic matter (SOM). Moreover, N input modifies the priming effect (PE), that is, the effect of fresh organics on the microbial decomposition of SOM. We studied the interactive effects of C and N on SOM mineralization (by natural (13) C labelling adding C4 -sucrose or C4 -maize straw to C3 -soil) in relation to microbial growth kinetics and to the activities of five hydrolytic enzymes. This encompasses the groups of parameters governing two mechanisms of priming effects - microbial N mining and stoichiometric decomposition theories. In sole C treatments, positive PE was accompanied by a decrease in specific microbial growth rates, confirming a greater contribution of K-strategists to the decomposition of native SOM. Sucrose addition with N significantly accelerated mineralization of native SOM, whereas mineral N added with plant residues accelerated decomposition of plant residues. This supports the microbial mining theory in terms of N limitation. Sucrose addition with N was accompanied by accelerated microbial growth, increased activities of β-glucosidase and cellobiohydrolase, and decreased activities of xylanase and leucine amino peptidase. This indicated an increased contribution of r-strategists to the PE and to decomposition of cellulose but the decreased hemicellulolytic and proteolytic activities. Thus, the acceleration of the C cycle was primed by exogenous organic C and was controlled by N. This confirms the stoichiometric decomposition theory. Both K- and r-strategists were beneficial for priming effects, with an increasing contribution of K-selected species under N limitation. Thus, the priming phenomenon described in 'microbial N mining' theory can be ascribed to K-strategists. In contrast, 'stoichiometric decomposition' theory, that is, accelerated OM mineralization due to balanced microbial growth, is explained by domination of r-strategists.

Root exudates mediated interactions belowground

Abstract: The root exudate composition reflects the contradictory-concomitantly attractive and repulsive-behaviour of plants towards soil microorganisms. Plants produce antimicrobial, insecticide and nematicide compounds to repel pathogens and invaders. They also produce border cells that detach from roots and play an important role as biological and physical barrier against aggressors. Plants produce also metabolites used as carbon source resulting in the attraction of phytobeneficial soil microorganisms that help plants in controlling diseases directly via the production of antimicrobial compounds or indirectly via the induction of plant systemic resistance. The root exudates may have a direct impact on carbon and nitrogen cycling, as they exhibit a rhizosphere priming effect towards soil organic matter degraders, and may inhibit nitrification process by soil nitrifying microorganisms. They also contain signalling molecules required for the establishment of ‘plant-microorganisms’ interactions. The composition of root exudates is therefore broad ranging, consisting of feeding, antimicrobial and signalling molecules. We thus focused this review on current research concerning the role of the root exudate composition in ‘plant-microorganisms’ interactions and functioning of the rhizosphere.

Aggregate-associated soil organic matter as an ecosystem property and a measurement tool ☆

Abstract: Our 2000 paper Soil macroaggregate turnover and microaggregate formation: A mechanism for C sequestration under no-tillage agriculture had its genesis in attempts to identify and isolate soil organic matter (SOM) fractions that reflect the impacts of climate, soil physiochemical properties and physical disturbance on the soil organic carbon balance. A key prerequisite for the investigation was the development of a simple device to isolate the microaggregates (53–250 μm) contained within stable (i.e., resistant to slaking) macroaggregates (>250 μm) obtained by conventional wet-sieving. By comparing the abundance and C content of micro-within-macroaggregates, the size distribution of intra-aggregate particulate organic matter (iPOM) and isotopically-based estimates of the age of the organic matter in the different fractions, we were able to corroborate our hypothesis that the absence of tillage (i.e., in no-till and native soils) promotes greater longevity of newly-formed macroaggregates, resulting in greater SOM stabilization in microaggregates formed within stable macroaggregates. Follow-up research has indicated that the microaggregate-within-macroaggregate fraction is 1) potentially a robust indicator for management-induced SOC changes over decadal time scales, 2) of biological origin and therefore useful in interpreting impacts of soil biota on soil C and N dynamics, but not in-situ CO 2 and N 2 O fluxes, 3) useful in complimentary chemical and spectroscopic approaches to relate SOM dynamics to soil structure and attributes of the soil pore space, and 4) a good candidate for being incorporated into models as a measurable fraction.

Does agricultural crop diversity enhance soil microbial biomass and organic matter dynamics? A meta-analysis

Abstract: Our increasing dependence on a small number of agricultural crops, such as corn, is leading to reductions in agricultural biodiversity. Reductions in the number of crops in rotation or the replacement of rotations by monocultures are responsible for this loss of biodiversity. The belowground implications of simplifying agricultural plant communities remain unresolved; however, agroecosystem sustainability will be severely compromised if reductions in biodiversity reduce soil C and N concentrations, alter microbial communities, and degrade soil ecosystem functions as reported in natural communities. We conducted a meta-analysis of 122 studies to examine crop rotation effects on total soil C and N concentrations, and the faster cycling microbial biomass C and N pools that play key roles in soil nutrient cycling and physical processes such as aggregate formation. We specifically examined how rotation crop type and management practices influence C and N dynamics in different climates and soil types. We found that adding one or more crops in rotation to a monoculture increased total soil C by 3.6% and total N by 5.3%, but when rotations included a cover crop (i.e., crops that are not harvested but produced to enrich the soil and capture inorganic N), total C increased by 8.5% and total N 12.8%. Rotations substantially increased the soil microbial biomass C (20.7%) and N (26.1%) pools, and these overwhelming effects on microbial biomass were not moderated by crop type or management practices. Crop rotations, especially those that include cover crops, sustain soil quality and productivity by enhancing soil C, N, and microbial biomass, making them a cornerstone for sustainable agroecosystems.

Soil enzyme activities, microbial communities, and carbon and nitrogen availability in organic agroecosystems across an intensively-managed agricultural landscape

Abstract: Variability in the activity and composition of soil microbial communities may have important implications for the suite of microbially-derived ecosystem functions upon which agricultural systems rely, particularly organic agriculture. An on-farm approach was used to investigate microbial communities and soil carbon (C) and nitrogen (N) availability on 13 organically-managed fields growing Roma-type tomatoes, but differing in nutrient management, across an intensively-managed agricultural landscape in the Central Valley of California. Soil physicochemical characteristics, potential activities of nine soil enzymes involved in C, N, phosphorus (P), and sulfur (S) cycling, and fatty acid methyl esters (FAMEs) were measured during the growing season and evaluated with multivariate approaches. Soil texture and pH in the 0–15 cm surface layer were similar across the 13 fields, but there was a three-fold range of soil C and N as well as substantial variation in inorganic N and available P that reflected current and historical management practices. Redundancy analysis showed distinct profiles of enzyme activities across the fields, such that C-cycling enzyme potential activities increased with inorganic N availability while those of N-cycling enzymes increased with C availability. Although FAMEs suggested that microbial community composition was less variable across fields than enzyme activities, there were slight community differences that were related to organic amendments (manure vs. composted green waste). Overall, however, the general similarity among fields for particular taxonomic indicators, especially saprophytic fungi, likely reflects the high disturbance and low complexity in this landscape. Variation in potential enzyme activities was better accounted for with soil physicochemical characteristics than microbial community composition, suggesting high plasticity of the resident microbial community to environmental conditions. These patterns suggest that, in this landscape, differences in organic agroecosystem management have strongly influenced soil nutrients and enzyme activity, but without a major effect on soil microbial communities. The on-farm approach provided a wide range of farming practices and soil characteristics to reveal how microbially-derived ecosystem functions can be effectively manipulated to enhance nutrient cycling capacity.

Land-use conversion and changing soil carbon stocks in China's 'Grain-for-Green' Program: a synthesis.

Abstract: The establishment of either forest or grassland on degraded cropland has been proposed as an effective method for climate change mitigation because these land use types can increase soil carbon (C) stocks. This paper synthesized 135 recent publications (844 observations at 181 sites) focused on the conversion from cropland to grassland, shrubland or forest in China, better known as the ‘Grain-for-Green’ Program to determine which factors were driving changes to soil organic carbon (SOC). The results strongly indicate a positive impact of cropland conversion on soil C stocks. The temporal pattern for soil C stock changes in the 0–100 cm soil layer showed an initial decrease in soil C during the early stage ( 5 years) coincident with vegetation restoration. The rates of soil C change were higher in the surface profile (0–20 cm) than in deeper soil (20–100 cm). Cropland converted to forest (arbor) had the additional benefit of a slower but more persistent C sequestration capacity than shrubland or grassland. Tree species played a significant role in determining the rate of change in soil C stocks (conifer < broadleaf, evergreen < deciduous forests). Restoration age was the main factor, not temperature and precipitation, affecting soil C stock change after cropland conversion with higher initial soil C stock sites having a negative effect on soil C accumulation. Soil C sequestration significantly increased with restoration age over the long-term, and therefore, the large scale of land-use change under the ‘Grain-for-Green’ Program will significantly increase China’s C stocks.

Connecting Soil Organic Carbon and Root Biomass with Land-Use and Vegetation in Temperate Grassland

Abstract: Soils contain much of Earth’s terrestrial organic carbon but are sensitive to land-use. Rangelands are important to carbon dynamics and are among ecosystems most widely impacted by land-use. While common practices like grazing, fire, and tillage affect soil properties directly related to soil carbon dynamics, their magnitude and direction of change vary among ecosystems and with intensity of disturbance. We describe variability in soil organic carbon (SOC) and root biomass—sampled from 0–170 cm and 0–100 cm, respectively—in terms of soil properties, land-use history, current management, and plant community composition using linear regression and multivariate ordination. Despite consistency in average values of SOC and root biomass between our data and data from rangelands worldwide, broad ranges in root biomass and SOC in our data suggest these variables are affected by other site-specific factors. Pastures with a recent history of severe grazing had reduced root biomass and greater bulk density. Ordination suggests greater exotic species richness is associated with lower root biomass but the relationship was not apparent when an invasive species of management concern was specifically tested. We discuss how unexplained variability in belowground properties can complicate measurement and prediction of ecosystem processes such as carbon sequestration.

Linking N2O emissions from biochar-amended soil to the structure and function of the N-cycling microbial community

Abstract: Nitrous oxide (N2O) contributes 8% to global greenhouse gas emissions. Agricultural sources represent about 60% of anthropogenic N2O emissions. Most agricultural N2O emissions are due to increased fertilizer application. A considerable fraction of nitrogen fertilizers are converted to N2O by microbiological processes (that is, nitrification and denitrification). Soil amended with biochar (charcoal created by pyrolysis of biomass) has been demonstrated to increase crop yield, improve soil quality and affect greenhouse gas emissions, for example, reduce N2O emissions. Despite several studies on variations in the general microbial community structure due to soil biochar amendment, hitherto the specific role of the nitrogen cycling microbial community in mitigating soil N2O emissions has not been subject of systematic investigation. We performed a microcosm study with a water-saturated soil amended with different amounts (0%, 2% and 10% (w/w)) of high-temperature biochar. By quantifying the abundance and activity of functional marker genes of microbial nitrogen fixation (nifH), nitrification (amoA) and denitrification (nirK, nirS and nosZ) using quantitative PCR we found that biochar addition enhanced microbial nitrous oxide reduction and increased the abundance of microorganisms capable of N2-fixation. Soil biochar amendment increased the relative gene and transcript copy numbers of the nosZ-encoded bacterial N2O reductase, suggesting a mechanistic link to the observed reduction in N2O emissions. Our findings contribute to a better understanding of the impact of biochar on the nitrogen cycling microbial community and the consequences of soil biochar amendment for microbial nitrogen transformation processes and N2O emissions from soil.

The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems

Abstract: It is well known that atmospheric concentrations of carbon dioxide (CO2) (and other greenhouse gases) have increased markedly as a result of human activity since the industrial revolution. It is perhaps less appreciated that natural and managed soils are an important source and sink for atmospheric CO2 and that, primarily as a result of the activities of soil microorganisms, there is a soil-derived respiratory flux of CO2 to the atmosphere that overshadows by tenfold the annual CO2 flux from fossil fuel emissions. Therefore small changes in the soil carbon cycle could have large impacts on atmospheric CO2 concentrations. Here we discuss the role of soil microbes in the global carbon cycle and review the main methods that have been used to identify the microorganisms responsible for the processing of plant photosynthetic carbon inputs to soil. We discuss whether application of these techniques can provide the information required to underpin the management of agro-ecosystems for carbon sequestration and increased agricultural sustainability. We conclude that, although crucial in enabling the identification of plant-derived carbon-utilising microbes, current technologies lack the high-throughput ability to quantitatively apportion carbon use by phylogentic groups and its use efficiency and destination within the microbial metabolome. It is this information that is required to inform rational manipulation of the plant–soil system to favour organisms or physiologies most important for promoting soil carbon storage in agricultural soil.

Does biochar influence soil physical properties and soil water availability

Abstract: This study aims to (i) determine the effects of incorporating 47 Mg ha−1 acacia green waste biochar on soil physical properties and water relations, and (ii) to explore the different mechanisms by which biochar influences soil porosity. The pore size distribution of the biochar was determined by scanning electron microscope and mercury porosimetry. Soil physical properties and water relations were determined by in situ tension infiltrometers, desorption and evaporative flux on intact cores, pressure chamber analysis at −1,500 kPa, and wet aggregate sieving. Thirty months after incorporation, biochar application had no significant effect on soil moisture content, drainable porosity between –1.0 and −10 kPa, field capacity, plant available water capacity, the van Genuchten soil water retention parameters, aggregate stability, nor the permanent wilting point. However, the biochar-amended soil had significantly higher near-saturated hydraulic conductivity, soil water content at −0.1 kPa, and significantly lower bulk density than the unamended control. Differences were attributed to the formation of large macropores (>1,200 μm) resulting from greater earthworm burrowing in the biochar-amended soil. We found no evidence to suggest application of biochar influenced soil porosity by either direct pore contribution, creation of accommodation pores, or improved aggregate stability.

Recently identified microbial guild mediates soil N2O sink capacity

Abstract: Nitrous oxide (N2O) is a greenhouse gas and an important ozone-depleting substance. Microbial nitrogen cycling in agricultural soils is a major source of atmospheric N2O. Now, research shows that the capacity of soils to take up N2O is mostly explained by the abundance and diversity of a newly described N2O-reducing microbial group.

Biogenic volatile emissions from the soil

Abstract: Volatile compounds are usually associated with an appearance/presence in the atmosphere. Recent advances, however, indicated that the soil is a huge reservoir and source of biogenic volatile organic compounds (bVOCs), which are formed from decomposing litter and dead organic material or are synthesized by underground living organism or organs and tissues of plants. This review summarizes the scarce available data on the exchange of VOCs between soil and atmosphere and the features of the soil and particle structure allowing diffusion of volatiles in the soil, which is the prerequisite for biological VOC-based interactions. In fact, soil may function either as a sink or as a source of bVOCs. Soil VOC emissions to the atmosphere are often 1-2 (0-3) orders of magnitude lower than those from aboveground vegetation. Microorganisms and the plant root system are the major sources for bVOCs. The current methodology to detect belowground volatiles is described as well as the metabolic capabilities resulting in the wealth of microbial and root VOC emissions. Furthermore, VOC profiles are discussed as non-destructive fingerprints for the detection of organisms. In the last chapter, belowground volatile-based bi- and multi-trophic interactions between microorganisms, plants and invertebrates in the soil are discussed.

Rhizosphere priming effects on soil carbon and nitrogen mineralization

Abstract: Living roots and their rhizodeposits affect microbial activity and soil carbon (C) and nitrogen (N) mineralization. This so-called rhizosphere priming effect (RPE) has been increasingly recognized recently. However, the magnitude of the RPE and its driving mechanisms remain elusive. Here we investigated the RPE of two plant species (soybean and sunflower) grown in two soil types (a farm or a prairie soil) and sampled at two phenological stages (vegetative and mature stages) over an 88-day period in a greenhouse experiment. We measured soil C mineralization using a continuous 13C-labeling method, and quantified gross N mineralization with a 15N-pool dilution technique. We found that living roots significantly enhanced soil C mineralization, by 27–245%. This positive RPE on soil C mineralization did not vary between the two soils or the two phenological stages, but was significantly greater in sunflower compared to soybean. The magnitude of the RPE was positively correlated with rhizosphere respiration rate across all treatments, suggesting the variation of RPE among treatments was likely caused by variations in root activity and rhizodeposit quantity. Moreover, living roots stimulated gross N mineralization rate by 36–62% in five treatments, while they had no significant impact in the other three treatments. We also quantified soil microbial biomass and extracellular enzyme activity when plants were at the vegetative stage. Generally, living roots increased microbial biomass carbon by 0–28%, β-glucosidase activity by 19–56%, and oxidative enzyme activity by 0–46%. These results are consistent with the positive rhizosphere effect on soil C (45–79%) and N (10–52%) mineralization measured at the same period. We also found significant positive relationships between β-glucosidase activity and soil C mineralization rates and between oxidative enzyme activity and gross N mineralization rates across treatments. These relationships provide clear evidence for the microbial activation hypothesis of RPE. Our results demonstrate that root–soil–microbial interactions can stimulate soil C and N mineralization through rhizosphere effects. The relationships between the RPE and rhizosphere respiration rate and soil enzyme activity can be used for explicit representations of RPE in soil organic matter models.

Salinity affects microbial activity and soil organic matter content in tidal wetlands

Abstract: Climate change-associated sea level rise is expected to cause saltwater intrusion into many historically freshwater ecosystems. Of particular concern are tidal freshwater wetlands, which perform several important ecological functions including carbon sequestration. To predict the impact of saltwater intrusion in these environments, we must first gain a better understanding of how salinity regulates decomposition in natural systems. This study sampled eight tidal wetlands ranging from freshwater to oligohaline (0-2 ppt) in four rivers near the Chesapeake Bay (Virginia). To help isolate salinity effects, sites were selected to be highly similar in terms of plant community composition and tidal influence. Overall, salinity was found to be strongly negatively correlated with soil organic matter content (OM%) and C : N, but unrelated to the other studied environmental parameters (pH, redox, and above- and below-ground plant biomass). Partial correlation analysis, controlling for these environmental covariates, supported direct effects of salinity on the activity of carbon-degrading extracellular enzymes (β-1, 4-glucosidase, 1, 4-β-cellobiosidase, β-D-xylosidase, and phenol oxidase) as well as alkaline phosphatase, using a per unit OM basis. As enzyme activity is the putative rate-limiting step in decomposition, enhanced activity due to salinity increases could dramatically affect soil OM accumulation. Salinity was also found to be positively related to bacterial abundance (qPCR of the 16S rRNA gene) and tightly linked with community composition (T-RFLP). Furthermore, strong relationships were found between bacterial abundance and/or composition with the activity of specific enzymes (1, 4-β-cellobiosidase, arylsulfatase, alkaline phosphatase, and phenol oxidase) suggesting salinity's impact on decomposition could be due, at least in part, to its effect on the bacterial community. Together, these results indicate that salinity increases microbial decomposition rates in low salinity wetlands, and suggests that these ecosystems may experience decreased soil OM accumulation, accretion, and carbon sequestration rates even with modest levels of saltwater intrusion.

Chronic nitrogen additions suppress decomposition and sequester soil carbon in temperate forests

Abstract: The terrestrial biosphere sequesters up to a third of annual anthropogenic carbon dioxide emis- sions, offsetting a substantial portion of greenhouse gas forcing of the climate system. Although a number of factors are responsible for this terrestrial carbon sink, atmospheric nitrogen deposition contributes by enhancing tree productivity and promoting carbon storage in tree biomass. Forest soils also represent an important, but understudied carbon sink. Here, we examine the contribution of trees versus soil to total ecosystem carbon storage in a temperate forest and investigate the mechanisms by which soils accumulate carbon in response to two decades of elevated nitrogen inputs. We find that nitrogen-induced soil carbon accumulation is of equal or greater magnitude to carbon stored in trees, with the degree of response being dependent on stand type (hardwood versus pine) and level of N addition. Nitrogen enrichment resulted in a shift in organic matter chemistry and the microbial community such that unfertilized soils had a higher relative abundance of fungi and lipid, phenolic, and N-bearing compounds; whereas, N-amended plots were associated with reduced fungal biomass and activity and higher rates of lignin accumulation. We conclude that soil carbon accumulation in response to N enrichment was largely due to a suppression of organic matter decomposition rather than enhanced carbon inputs to soil via litter fall and root production.

Do cover crops increase or decrease nitrous oxide emissions? A meta-analysis

Abstract: There are many environmental benefits to incorporating cover crops into crop rotations, such as their potential to decrease soil erosion, reduce nitrate (NO 3 ) leaching, and increase soil organic matter. Some of these benefits impact other agroecosystem processes, such as greenhouse gas emissions. In particular, there is not a consensus in the literature regarding the effect of cover crops on nitrous oxide (N 2 O) emissions. Compared to site-specific studies, meta-analysis can provide a more general investigation into these effects. Twenty-six peer-re- viewed articles including 106 observations of cover crop effects on N 2 O emissions from the soil surface were analyzed according to their response ratio, the natural log of the N 2 O flux with a cover crop divided by the N 2 O flux without a cover crop (LRR). Forty percent of the observations had negative LRRs, indicating a cover crop treatment which decreased N 2 O, while 60% had positive LRRs indicating a cover crop treatment which increased N 2 O. There was a significant interaction between N rate and the type of cover crop where legumes had higher LRRs at lower N rates than nonlegume species. When cover crop residues were incorporated into the soil, LRRs were significantly higher than those where residue was not incorporated. Geographies with higher total precipitation and variability in precipitation tended to produce higher LRRs. Finally, data points measured during cover crop decompo- sition had large positive LRRs and were larger than those measured when the cover crop was alive. In contrast, those data points measuring for a full year had LRRs close to zero, indicating that there was a balance between periods when cover crops increased N 2 O and periods when cover crops decreased emissions. Therefore, N 2 O measurements over the entire year may be needed to determine the net effect of cover crops on N 2 O. The data included in this meta-analysis indicate some overarching crop management practices that reduce direct N 2 O emissions from the soil surface, such as no soil incorporation of residues and use of non- legume cover crop species. However, our results demonstrate that cover crops do not always reduce direct N 2 O emissions from the soil surface in the short term and that more work is needed to understand the full global warming potential of cover crop management.

Circumpolar assessment of permafrost C quality and its vulnerability over time using long‐term incubation data

Abstract: High-latitude ecosystems store approximately 1700 Pg of soil carbon (C), which is twice as much C as is currently contained in the atmosphere. Permafrost thaw and subsequent microbial decomposition of permafrost organic matter could add large amounts of C to the atmosphere, thereby influencing the global C cycle. The rates at which C is being released from the permafrost zone at different soil depths and across different physiographic regions are poorly understood but crucial in understanding future changes in permafrost C storage with climate change. We assessed the inherent decomposability of C from the permafrost zone by assembling a database of long-term (>1 year) aerobic soil incubations from 121 individual samples from 23 high-latitude ecosystems located across the northern circumpolar permafrost zone. Using a three-pool (i.e., fast, slow and passive) decomposition model, we estimated pool sizes for C fractions with different turnover times and their inherent decomposition rates using a reference temperature of 5 °C. Fast cycling C accounted for less than 5% of all C in both organic and mineral soils whereas the pool size of slow cycling C increased with C : N. Turnover time at 5 °C of fast cycling C typically was below 1 year, between 5 and 15 years for slow turning over C, and more than 500 years for passive C. We project that between 20 and 90% of the organic C could potentially be mineralized to CO2 within 50 incubation years at a constant temperature of 5 °C, with vulnerability to loss increasing in soils with higher C : N. These results demonstrate the variation in the vulnerability of C stored in permafrost soils based on inherent differences in organic matter decomposability, and point toward C : N as an index of decomposability that has the potential to be used to scale permafrost C loss across landscapes.

Integrating microbial physiology and physio-chemical principles in soils with the MIcrobial-MIneral Carbon Stabilization (MIMICS) model

Abstract: . A growing body of literature documents the pressing need to develop soil biogeochemistry models that more accurately reflect contemporary understanding of soil processes and better capture soil carbon (C) responses to environmental perturbations. Models that explicitly represent microbial activity offer inroads to improve representations of soil biogeochemical processes, but have yet to consider relationships between litter quality, functional differences in microbial physiology, and the physical protection of microbial byproducts in forming stable soil organic matter (SOM). To address these limitations, we introduce the MIcrobial-MIneral Carbon Stabilization (MIMICS) model, and evaluate it by comparing site-level soil C projections with observations from a long-term litter decomposition study and soil warming experiment. In MIMICS, the turnover of litter and SOM pools is governed by temperature-sensitive Michaelis–Menten kinetics and the activity of two physiologically distinct microbial functional types. The production of microbial residues through microbial turnover provides inputs to SOM pools that are considered physically or chemically protected. Soil clay content determines the physical protection of SOM in different soil environments. MIMICS adequately simulates the mean rate of leaf litter decomposition observed at temperate and boreal forest sites, and captures observed effects of litter quality on decomposition rates. Moreover, MIMICS better captures the response of SOM pools to experimental warming, with rapid SOM losses but declining temperature sensitivity to long-term warming, compared with a more conventional model structure. MIMICS incorporates current microbial theory to explore the mechanisms by which litter C is converted to stable SOM, and to improve predictions of soil C responses to environmental change.

Nutrient availability limits carbon sequestration in arable soils

Abstract: Soils are the largest reservoir of global terrestrial carbon (C). Conversion from natural to agricultural ecosystems has generally resulted in a significant loss of soil organic-C (SOC, up to 50% or ∼30–40 t ha−1) and ‘restoring’ this lost C is a significant global challenge. The most stable component of soil organic matter (SOM), hereafter referred to as fine fraction SOM (FF-SOM), contains not only C, hydrogen (H) and oxygen (O), but substantial amounts of nitrogen (N), phosphorus (P) and sulphur (S), in approximately constant ratios. The availability of these associated nutrients is essential for the formation of FF-SOM. Here we show, in short term (56 day) incubation experiments with 13C labelled wheaten straw added to four soils with differing clay content, that conversion of straw into “new” FF-SOM is increased by up to three-fold by augmenting the residues with supplementary nutrients. We also show that the loss of “old” pre-existing FF-SOM increased with straw addition, compared to soils with no straw addition, but that this loss was ameliorated by nutrient addition in two of our soils. This finding may illuminate why the build-up of SOC in some productive agricultural soils is often much less than expected from the amounts of C-rich residues returned to them because optimum C sequestration requires additional nutrients above that required for crop production alone. Moreover, it provides greater understanding of short-term dynamics of C turnover in soil, and in the longer term, may have important implications for global strategies aimed at increasing soil C sequestration to restore fertility and help mitigate climate change.

Soil fertility is associated with fungal and bacterial richness, whereas pH is associated with community composition in polar soil microbial communities

Abstract: Microbial activities in Arctic and Antarctic soils are of particular interest due to uncertainty surrounding the fate of the enormous polar soil organic matter (SOM) pools and the potential to lose unique and vulnerable micro-organisms from these ecosystems. We quantified richness, evenness and taxonomic composition of both fungi and bacteria in 223 Arctic and Antarctic soil samples across 8 locations to test the global applicability of hypotheses concerning edaphic drivers of soil microbial communities that have been primarily developed from studies of bacteria in temperate and tropical systems. We externally validated our model's conclusions with an independent dataset comprising 33 Arctic heath samples. We also explored if our system was responding to large scale climatic or biogeographical processes that we had not measured by evaluating model stability for one location, Mitchell Pennisula, that had been extensively sampled. Soil Fertility (defined as organic matter, nitrogen and chloride content) was the most important edaphic property associated with measures of α-diversity such as microbial richness and evenness (especially for fungi), whereas pH was primarily associated with measures of β-diversity such as phylogenetic structure and diversity (especially for bacteria). Surprisingly, phosphorus emerged as consistently the second most important driver of all facets of microbial community structure for both fungi and bacteria. Despite the clear importance of edaphic factors in controlling microbial communities, our analyses also indicated that fungal/bacterial interactions play a major, but causally unclear, role in structuring the soil microbial communities of which they are a part.

Plant species richness promotes soil carbon and nitrogen stocks in grasslands without legumes

Abstract: Summary 1. The storage of carbon (C) and nitrogen (N) in soil is important ecosystem functions. Grassland biodiversity experiments have shown a positive effect of plant diversity on soil C and N storage. However, these experiments all included legumes, which constitute an important N input through N2-fixation. Indeed, the results of these experiments suggest that N2 fixation by legumes is a major driver of soil C and N storage. 2. We studied whether plant diversity affects soil C and N storage in the absence of legumes. In an 11-year grassland biodiversity experiment without legumes, we measured soil C and N stocks. We further determined above-ground biomass productivity, standing root biomass, soil organic matter decomposition and N mineralization rates to understand the mechanisms underlying the change in soil C and N stocks in relation to plant diversity and their feedbacks to plant productivity. 3. We found that soil C and N stocks increased by 18% and 16% in eight-species mixtures compared to the average of monocultures of the same species, respectively. Increased soil C and N stocks were mainly driven by increased C input and N retention, resulting from enhanced plant productivity, which surpassed enhanced C loss from decomposition. Importantly, higher soil C and N stocks were associated with enhanced soil N mineralization rates, which can explain the strengthening of the positive diversity–productivity relationship observed in the last years of the experiment. 4. Synthesis. We demonstrated that also in the absence of legumes, plant species richness promotes soil carbon (C) and nitrogen (N) stocks via increased plant productivity. In turn, enhanced soil C and N stocks showed a positive feedback to plant productivity via enhanced N mineralization, which could further accelerate soil C and N storage in the long term.

Biochar decelerates soil organic nitrogen cycling but stimulates soil nitrification in a temperate arable field trial.

Abstract: Biochar production and subsequent soil incorporation could provide carbon farming solutions to global climate change and escalating food demand. There is evidence that biochar amendment causes fundamental changes in soil nutrient cycles, often resulting in marked increases in crop production, particularly in acidic and in infertile soils with low soil organic matter contents, although comparable outcomes in temperate soils are variable. We offer insight into the mechanisms underlying these findings by focusing attention on the soil nitrogen (N) cycle, specifically on hitherto unmeasured processes of organic N cycling in arable soils. We here investigated the impacts of biochar addition on soil organic and inorganic N pools and on gross transformation rates of both pools in a biochar field trial on arable land (Chernozem) in Traismauer, Lower Austria. We found that biochar increased total soil organic carbon but decreased the extractable organic C pool and soil nitrate. While gross rates of organic N transformation processes were reduced by 50–80%, gross N mineralization of organic N was not affected. In contrast, biochar promoted soil ammonia-oxidizer populations (bacterial and archaeal nitrifiers) and accelerated gross nitrification rates more than two-fold. Our findings indicate a de-coupling of the soil organic and inorganic N cycles, with a build-up of organic N, and deceleration of inorganic N release from this pool. The results therefore suggest that addition of inorganic fertilizer-N in combination with biochar could compensate for the reduction in organic N mineralization, with plants and microbes drawing on fertilizer-N for growth, in turn fuelling the belowground build-up of organic N. We conclude that combined addition of biochar with fertilizer-N may increase soil organic N in turn enhancing soil carbon sequestration and thereby could play a fundamental role in future soil management strategies.

Input of easily available organic C and N stimulates microbial decomposition of soil organic matter in arctic permafrost soil

Abstract: Rising temperatures in the Arctic can affect soil organic matter (SOM) decomposition directly and indirectly, by increasing plant primary production and thus the allocation of plant-derived organic compounds into the soil. Such compounds, for example root exudates or decaying fine roots, are easily available for microorganisms, and can alter the decomposition of older SOM (“priming effect”). We here report on a SOM priming experiment in the active layer of a permafrost soil from the central Siberian Arctic, comparing responses of organic topsoil, mineral subsoil, and cryoturbated subsoil material (i.e., poorly decomposed topsoil material subducted into the subsoil by freeze–thaw processes) to additions of 13C-labeled glucose, cellulose, a mixture of amino acids, and protein (added at levels corresponding to approximately 1% of soil organic carbon). SOM decomposition in the topsoil was barely affected by higher availability of organic compounds, whereas SOM decomposition in both subsoil horizons responded strongly. In the mineral subsoil, SOM decomposition increased by a factor of two to three after any substrate addition (glucose, cellulose, amino acids, protein), suggesting that the microbial decomposer community was limited in energy to break down more complex components of SOM. In the cryoturbated horizon, SOM decomposition increased by a factor of two after addition of amino acids or protein, but was not significantly affected by glucose or cellulose, indicating nitrogen rather than energy limitation. Since the stimulation of SOM decomposition in cryoturbated material was not connected to microbial growth or to a change in microbial community composition, the additional nitrogen was likely invested in the production of extracellular enzymes required for SOM decomposition. Our findings provide a first mechanistic understanding of priming in permafrost soils and suggest that an increase in the availability of organic carbon or nitrogen, e.g., by increased plant productivity, can change the decomposition of SOM stored in deeper layers of permafrost soils, with possible repercussions on the global climate.