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Showing papers on "Soil organic matter published in 2015"


Journal ArticleDOI
23 Nov 2015-Nature
TL;DR: It is argued that the available evidence does not support the formation of large-molecular-size and persistent ‘humic substances’ in soils, and instead soil organic matter is a continuum of progressively decomposing organic compounds.
Abstract: Instead of containing stable and chemically unique ‘humic substances’, as has been widely accepted, soil organic matter is a mixture of progressively decomposing organic compounds; this has broad implications for soil science and its applications. The exchange of nutrients, energy and carbon between soil organic matter, the soil environment, aquatic systems and the atmosphere is important for agricultural productivity, water quality and climate. Long-standing theory suggests that soil organic matter is composed of inherently stable and chemically unique compounds. Here we argue that the available evidence does not support the formation of large-molecular-size and persistent ‘humic substances’ in soils. Instead, soil organic matter is a continuum of progressively decomposing organic compounds. We discuss implications of this view of the nature of soil organic matter for aquatic health, soil carbon–climate interactions and land management. Soil organic matter contains a large portion of the world's carbon and plays an important role in maintaining productive soils and water quality. Nevertheless, a consensus on the nature of soil organic matter is lacking. Johannes Lehmann and Markus Kleber argue that soil organic matter should no longer be seen as large and persistent, chemically unique substances, but as a continuum of progressively decomposing organic compounds.

2,206 citations


Journal ArticleDOI
TL;DR: It is suggested that, irrespective of their volume, the hotspots are mainly responsible for the ecologically relevant processes in soil, including succession in microbial communities and intense intra- and interspecific competition affecting C use efficiency, microbial growth and turnover.
Abstract: Soils are the most heterogeneous parts of the biosphere, with an extremely high differentiation of properties and processes within nano- to macroscales. The spatial and temporal heterogeneity of input of labile organics by plants creates microbial hotspots over short periods of time – the hot moments. We define microbial hotspots as small soil volumes with much faster process rates and much more intensive interactions compared to the average soil conditions. Such hotspots are found in the rhizosphere, detritusphere, biopores (including drilosphere) and on aggregate surfaces, but hotspots are frequently of mixed origin. Hot moments are short-term events or sequences of events inducing accelerated process rates as compared to the average rates. Thus, hotspots and hot moments are defined by dynamic characteristics, i.e. by process rates. For this hotspot concept we extensively reviewed and examined the localization and size of hotspots, spatial distribution and visualization approaches, transport of labile C to and from hotspots, lifetime and process intensities, with a special focus on process rates and microbial activities. The fraction of active microorganisms in hotspots is 2–20 times higher than in the bulk soil, and their specific activities (i.e. respiration, microbial growth, mineralization potential, enzyme activities, RNA/DNA ratio) may also be much higher. The duration of hot moments in the rhizosphere is limited and is controlled by the length of the input of labile organics. It can last a few hours up to a few days. In the detritusphere, however, the duration of hot moments is regulated by the output – by decomposition rates of litter – and lasts for weeks and months. Hot moments induce succession in microbial communities and intense intra- and interspecific competition affecting C use efficiency, microbial growth and turnover. The faster turnover and lower C use efficiency in hotspots counterbalances the high C inputs, leading to the absence of strong increases in C stocks. Consequently, the intensification of fluxes is much stronger than the increase of pools. Maintenance of stoichiometric ratios by accelerated microbial growth in hotspots requires additional nutrients (e.g. N and P), causing their microbial mining from soil organic matter, i.e. priming effects. Consequently, priming effects are localized in microbial hotspots and are consequences of hot moments. We estimated the contribution of the hotspots to the whole soil profile and suggested that, irrespective of their volume, the hotspots are mainly responsible for the ecologically relevant processes in soil. By this review, we raised the importance of concepts and ecological theory of distribution and functioning of microorganisms in soil.

1,084 citations


Journal ArticleDOI
TL;DR: The throughput and resolution of the sequencing approach permitted to detect specific structural shifts at the level of individual microbial taxa that harbours a novel potential for managing the soil environment by means of promoting beneficial and suppressing detrimental organisms.
Abstract: Low-input agricultural systems aim at reducing the use of synthetic fertilizers and pesticides in order to improve sustainable production and ecosystem health. Despite the integral role of the soil microbiome in agricultural production, we still have a limited understanding of the complex response of microbial diversity to organic and conventional farming. Here we report on the structural response of the soil microbiome to more than two decades of different agricultural management in a long-term field experiment using a high-throughput pyrosequencing approach of bacterial and fungal ribosomal markers. Organic farming increased richness, decreased evenness, reduced dispersion and shifted the structure of the soil microbiota when compared with conventionally managed soils under exclusively mineral fertilization. This effect was largely attributed to the use and quality of organic fertilizers, as differences became smaller when conventionally managed soils under an integrated fertilization scheme were examined. The impact of the plant protection regime, characterized by moderate and targeted application of pesticides, was of subordinate importance. Systems not receiving manure harboured a dispersed and functionally versatile community characterized by presumably oligotrophic organisms adapted to nutrient-limited environments. Systems receiving organic fertilizer were characterized by specific microbial guilds known to be involved in degradation of complex organic compounds such as manure and compost. The throughput and resolution of the sequencing approach permitted to detect specific structural shifts at the level of individual microbial taxa that harbours a novel potential for managing the soil environment by means of promoting beneficial and suppressing detrimental organisms.

920 citations


Journal ArticleDOI
TL;DR: In this article, the authors followed the decomposition of isotopically labelled above-ground litter and its incorporation into soil organic matter over three years in a grassland in Kansas, USA, and used laboratory incubations to determine the decay rates and pool structure of litter-derived organic matter.
Abstract: Soil organic matter is a large global carbon pool. Isotopic labelling of litter in the lab and the field reveals that soil organic matter forms from labile organic compounds and litter fragments early and late in decomposition, respectively. Soil organic matter is the largest terrestrial carbon pool1. The pool size depends on the balance between formation of soil organic matter from decomposition of plant litter and its mineralization to inorganic carbon. Knowledge of soil organic matter formation remains limited2 and current C numerical models assume that stable soil organic matter is formed primarily from recalcitrant plant litter3. However, labile components of plant litter could also form mineral-stabilized soil organic matter4. Here we followed the decomposition of isotopically labelled above-ground litter and its incorporation into soil organic matter over three years in a grassland in Kansas, USA, and used laboratory incubations to determine the decay rates and pool structure of litter-derived organic matter. Early in decomposition, soil organic matter formed when non-structural compounds were lost from litter. Soil organic matter also formed at the end of decomposition, when both non-structural and structural compounds were lost at similar rates. We conclude that two pathways yield soil organic matter efficiently. A dissolved organic matter–microbial path occurs early in decomposition when litter loses mostly non-structural compounds, which are incorporated into microbial biomass at high rates, resulting in efficient soil organic matter formation. An equally efficient physical-transfer path occurs when litter fragments move into soil.

910 citations


Journal ArticleDOI
TL;DR: It is shown that higher plant diversity increases rhizosphere carbon inputs into the microbial community resulting in both increased microbial activity and carbon storage, indicating that the increase in carbon storage is mainly limited by the integration of new carbon into soil and less by the decomposition of existing soil carbon.
Abstract: Plant diversity strongly influences ecosystem functions and services, such as soil carbon storage. However, the mechanisms underlying the positive plant diversity effects on soil carbon storage are poorly understood. We explored this relationship using long-term data from a grassland biodiversity experiment (The Jena Experiment) and radiocarbon ((14)C) modelling. Here we show that higher plant diversity increases rhizosphere carbon inputs into the microbial community resulting in both increased microbial activity and carbon storage. Increases in soil carbon were related to the enhanced accumulation of recently fixed carbon in high-diversity plots, while plant diversity had less pronounced effects on the decomposition rate of existing carbon. The present study shows that elevated carbon storage at high plant diversity is a direct function of the soil microbial community, indicating that the increase in carbon storage is mainly limited by the integration of new carbon into soil and less by the decomposition of existing soil carbon.

891 citations


Book ChapterDOI
01 Jan 2015
TL;DR: In the field of soil biology, the potential for an exciting, dynamic future if we understand it and apply its unifying principles can be found in the recent advances in genomic studies as discussed by the authors.
Abstract: Our science, based on a successful past, has great potential for an exciting, dynamic future if we understand it and apply its unifying principles. Advances in genomic studies are identifying multitudes of new soil biota. Automated, analytical instrumentation and modeling are characterizing soil organic matter and its dynamics. Soil nutrient transformations, plant–microbial interactions, substrate availability, and interactions with the soil matrix at the nanometer and micrometer levels must be understood. They also need to be interpreted to kilometer–megameter scales required for both global C and N cycling as well as an increased understanding of human resources. The turnover of soil organic matter, now considered to be primarily microbial products, controls nutrients such as phosphorus, sulfur, and metals. Our complex field requires a greater knowledge of physiological, ecological, and modeling concepts. These concepts must be integrated with information on soil characteristics and breakthroughs in methodology to understand the diversity, occurrence, and interactions of organisms with their environment.

881 citations


Journal ArticleDOI
08 May 2015-Science
TL;DR: Recent advances in understanding global soil resources, including how carbon stored in soil responds to anthropogenic warming are reviewed, reveal the severity of soil-related issues at stake for the remainder of this century and the need to rapidly regain a balance to the physical and biological processes that drive and maintain soil properties.
Abstract: Human security has and will continue to rely on Earth's diverse soil resources. Yet we have now exploited the planet's most productive soils. Soil erosion greatly exceeds rates of production in many agricultural regions. Nitrogen produced by fossil fuel and geological reservoirs of other fertilizers are headed toward possible scarcity, increased cost, and/or geopolitical conflict. Climate change is accelerating the microbial release of greenhouse gases from soil organic matter and will likely play a large role in our near-term climate future. In this Review, we highlight challenges facing Earth's soil resources in the coming century. The direct and indirect response of soils to past and future human activities will play a major role in human prosperity and survival.

852 citations


Journal ArticleDOI
TL;DR: In this article, a meta-analysis revealed that slow pyrolyzed biochars produced from various feedstocks at temperatures from 300°C to 600°C consistently increased some physico-chemical properties (i.e., pH, cation exchange capacity and aggregation) and microbial parameters (e.g., abundance and community structure of microorganisms) in a vast number of soils during short (≤90 days) laboratory incubations and longer (1-3 years) field studies.

842 citations


Journal ArticleDOI
Rattan Lal1
TL;DR: In this paper, the authors proposed a strategy to minimize soil erosion, create positive organic carbon (SOC) and N budgets, enhance activity and species diversity of soil biota (micro, meso, and macro), and improve structural stability and pore geometry.
Abstract: Feeding the world population, 7.3 billion in 2015 and projected to increase to 9.5 billion by 2050, necessitates an increase in agricultural production of ~70% between 2005 and 2050. Soil degradation, characterized by decline in quality and decrease in ecosystem goods and services, is a major constraint to achieving the required increase in agricultural production. Soil is a non-renewable resource on human time scales with its vulnerability to degradation depending on complex interactions between processes, factors and causes occurring at a range of spatial and temporal scales. Among the major soil degradation processes are accelerated erosion, depletion of the soil organic carbon (SOC) pool and loss in biodiversity, loss of soil fertility and elemental imbalance, acidification and salinization. Soil degradation trends can be reversed by conversion to a restorative land use and adoption of recommended management practices. The strategy is to minimize soil erosion, create positive SOC and N budgets, enhance activity and species diversity of soil biota (micro, meso, and macro), and improve structural stability and pore geometry. Improving soil quality (i.e., increasing SOC pool, improving soil structure, enhancing soil fertility) can reduce risks of soil degradation (physical, chemical, biological and ecological) while improving the environment. Increasing the SOC pool to above the critical level (10 to 15 g/kg) is essential to set-in-motion the restorative trends. Site-specific techniques of restoring soil quality include conservation agriculture, integrated nutrient management, continuous vegetative cover such as residue mulch and cover cropping, and controlled grazing at appropriate stocking rates. The strategy is to produce “more from less” by reducing losses and increasing soil, water, and nutrient use efficiency.

841 citations


Journal ArticleDOI
TL;DR: Composting or compost addition can simultaneously increase soil organic matter content and soil fertility besides bioremediation, and thus is believed to be one of the most cost-effective methods for soil remediation.

692 citations


Journal ArticleDOI
TL;DR: In this article, the effects of resource stoichiometry on soil microorganisms and decomposition, specifically on the structure and function of the soil food web, have been investigated, focusing on heterotrophic microbial communities.
Abstract: Elemental stoichiometry constitutes an inherent link between biogeochemistry and the structure and processes within food webs, and thus is at the core of ecosystem functioning. Stoichiometry allows for spanning different levels of biological organization, from cellular metabolism to ecosystem structure and nutrient cycling, and is therefore particularly useful for establishing links between different ecosystem compartments. We review elemental carbon : nitrogen : phosphorus (C:N:P) ratios in terrestrial ecosystems (from vegetation, leaf litter, woody debris, and dead roots, to soil microbes and organic matter). While the stoichiometry of the plant, litter, and soil compartments of ecosystems is well understood, heterotrophic microbial communities, which dominate the soil food web and drive nutrient cycling, have received increasing interest in recent years. This review highlights the effects of resource stoichiometry on soil microorganisms and decomposition, specifically on the structure and function of h...

Journal ArticleDOI
TL;DR: It is suggested that changes in aridity, such as those predicted by climate-change models, may reduce microbial abundance and diversity, a response that will likely impact the provision of key ecosystem services by global drylands.
Abstract: Soil bacteria and fungi play key roles in the functioning of terrestrial ecosystems, yet our understanding of their responses to climate change lags significantly behind that of other organisms. This gap in our understanding is particularly true for drylands, which occupy ∼41% of Earth´s surface, because no global, systematic assessments of the joint diversity of soil bacteria and fungi have been conducted in these environments to date. Here we present results from a study conducted across 80 dryland sites from all continents, except Antarctica, to assess how changes in aridity affect the composition, abundance, and diversity of soil bacteria and fungi. The diversity and abundance of soil bacteria and fungi was reduced as aridity increased. These results were largely driven by the negative impacts of aridity on soil organic carbon content, which positively affected the abundance and diversity of both bacteria and fungi. Aridity promoted shifts in the composition of soil bacteria, with increases in the relative abundance of Chloroflexi and α-Proteobacteria and decreases in Acidobacteria and Verrucomicrobia. Contrary to what has been reported by previous continental and global-scale studies, soil pH was not a major driver of bacterial diversity, and fungal communities were dominated by Ascomycota. Our results fill a critical gap in our understanding of soil microbial communities in terrestrial ecosystems. They suggest that changes in aridity, such as those predicted by climate-change models, may reduce microbial abundance and diversity, a response that will likely impact the provision of key ecosystem services by global drylands.

Journal ArticleDOI
TL;DR: In this article, it was shown that oxalic acid (a common exudate) releases organic compounds from protective mineral associations, which can lead to loss of soil carbon.
Abstract: Climate change enhances root exudation of organic compounds into soils and can lead to loss of soil carbon. Research now shows that oxalic acid (a common exudate) releases organic compounds from protective mineral associations.


Journal ArticleDOI
TL;DR: It is proposed that ectomycorrhizal fungi benefit from organic matter decomposition primarily through increased nitrogen mobilization rather than through release of metabolic C and questioned is the view that they may act as facultative saprotrophs.
Abstract: Although hypothesized for many years, the involvement of ectomycorrhizal fungi in decomposition of soil organic matter remains controversial and has not yet been fully acknowledged as an important factor in the regulation of soil carbon (C) storage. Here, we review recent findings, which support the view that some ectomycorrhizal fungi have the capacity to oxidize organic matter, either by 'brown-rot' Fenton chemistry or using 'white-rot' peroxidases. We propose that ectomycorrhizal fungi benefit from organic matter decomposition primarily through increased nitrogen mobilization rather than through release of metabolic C and question the view that ectomycorrhizal fungi may act as facultative saprotrophs. Finally, we discuss how mycorrhizal decomposition may influence organic matter storage in soils and mediate responses of ecosystem C sequestration to environmental changes.

Journal ArticleDOI
TL;DR: In this paper, the authors measured a range of soil and climate variables at 24 sites along a 4,000 km-long north-south transect of natural grassland and shrubland in Chile and the Antarctic Peninsula, which spans a broad range of climatic and geochemical conditions.
Abstract: Rising temperature can increase soil organic matter decomposition and CO2 emissions. In a 4,000 km north–south transect in Chile and Antarctica, soil geochemistry, which can be modified by climate, is the dominant direct control of carbon storage. Soils are an important site of carbon storage1. Climate is generally regarded as one of the primary controls over soil organic carbon1,2, but there is still uncertainty about the direction and magnitude of carbon responses to climate change. Here we show that geochemistry, too, is an important controlling factor for soil carbon storage. We measured a range of soil and climate variables at 24 sites along a 4,000-km-long north–south transect of natural grassland and shrubland in Chile and the Antarctic Peninsula, which spans a broad range of climatic and geochemical conditions. We find that soils with high carbon content are characterized by substantial adsorption of carbon compounds onto mineral soil and low rates of respiration per unit of soil carbon; and vice versa for soils with low carbon content. Precipitation and temperature were only secondary predictors for carbon storage, respiration, residence time and stabilization mechanisms. Correlations between climatic variables and carbon variables decreased significantly after removing relationships with geochemical predictors. We conclude that the interactions of climatic and geochemical factors control soil organic carbon storage and turnover, and must be considered for robust prediction of current and future soil carbon storage.

Journal ArticleDOI
TL;DR: In this paper, the effects of increased diversity in an agroecosystem, where plant diversity is increased over time through crop rotation, were tested for the effect of aboveground biodiversity on belowground communities and processes.
Abstract: Biodiversity loss, an important consequence of agricultural intensification, can lead to reductions in agroecosystem functions and services. Increasing crop diversity through rotation may alleviate these negative consequences by restoring positive aboveground–belowground interactions. Positive impacts of aboveground biodiversity on belowground communities and processes have primarily been observed in natural systems. Here, we test for the effects of increased diversity in an agroecosystem, where plant diversity is increased over time through crop rotation. As crop diversity increased from one to five species, distinct soil microbial communities were related to increases in soil aggregation, organic carbon, total nitrogen, microbial activity and decreases in the carbon-to-nitrogen acquiring enzyme activity ratio. This study indicates positive biodiversity– function relationships in agroecosystems, driven by interactions between rotational and microbial diversity. By increasing the quantity, quality and chemical diversity of residues, high diversity rotations can sustain soil biological communities, with positive effects on soil organic matter and soil fertility.

Journal ArticleDOI
TL;DR: The model builds on the Microbial Efficiency-Matrix Stabilization framework by suggesting the effect of litter quality on SOM stabilization is modulated by the extent of soil C saturation such that high-quality litters are not always stabilized in SOM with greater efficiency than low- quality litters.
Abstract: Labile, ‘high-quality’, plant litters are hypothesized to promote soil organic matter (SOM) stabilization in mineral soil fractions that are physicochemically protected from rapid mineralization. However, the effect of litter quality on SOM stabilization is inconsistent. High-quality litters, characterized by high N concentrations, low C/N ratios, and low phenol/lignin concentrations, are not consistently stabilized in SOM with greater efficiency than ‘low-quality’ litters characterized by low N concentrations, high C/N ratios, and high phenol/lignin concentrations. Here, we attempt to resolve these inconsistent results by developing a new conceptual model that links litter quality to the soil C saturation concept. Our model builds on the Microbial Efficiency-Matrix Stabilization framework (Cotrufo et al., 2013) by suggesting the effect of litter quality on SOM stabilization is modulated by the extent of soil C saturation such that high-quality litters are not always stabilized in SOM with greater efficiency than low-quality litters.

Journal ArticleDOI
TL;DR: In this article, the authors provide background on the main processes that affect plant and soil N isotope ratios and how they are affected by mycorrhizal fungi, climate, and microbial processing.
Abstract: Background Knowledge of biological and climatic controls in terrestrial nitrogen (N) cycling within and across ecosystems iscentral tounderstandingglobalpatternsof keyecosystemprocesses.Theratiosof 15 N: 14 Ninplants and soils have been used as indirect indices of N cycling parameters, yet our understanding of controls over N isotope ratios in plants and soils is still developing. Scope In this review, we provide background on the mainprocessesthataffectplantandsoilNisotoperatios. In a similar manner to partitioning the roles of state factors and interactive controls in determining ecosystem traits, we review N isotopes patterns in plants and soils across a number of proximal factors that influence ecosystem properties as well as mechanisms that affect these patterns. Lastly, some remaining questions that would improve our understanding of N isotopes in terrestrial ecosystems are highlighted. Conclusion Compared to a decade ago, the global patterns of plant and soil N isotope ratios are more resolved. Additionally, we better understand how plant and soil N isotope ratios are affected by such factors as mycorrhizal fungi, climate, and microbial processing. A comprehensive understanding of the N cycle that ascribes different degrees of isotopic fractionation for each step under different conditions is closer to being realized, but a number of process-level questions still remain.

Journal ArticleDOI
TL;DR: It is shown that root-accelerated mineralization and priming can account for up to one-third of the total C and N mineralized in temperate forest soils and that rhizosphere processes are a widespread, quantitatively important driver of SOM decomposition and nutrient release at the ecosystem scale.
Abstract: While there is an emerging view that roots and their associated microbes actively alter resource availability and soil organic matter (SOM) decomposition, the ecosystem consequences of such rhizosphere effects have rarely been quantified. Using a meta-analysis, we show that multiple indices of microbially mediated C and nitrogen (N) cycling, including SOM decomposition, are significantly enhanced in the rhizospheres of diverse vegetation types. Then, using a numerical model that combines rhizosphere effect sizes with fine root morphology and depth distributions, we show that root-accelerated mineralization and priming can account for up to one-third of the total C and N mineralized in temperate forest soils. Finally, using a stoichiometrically constrained microbial decomposition model, we show that these effects can be induced by relatively modest fluxes of root-derived C, on the order of 4% and 6% of gross and net primary production, respectively. Collectively, our results indicate that rhizosphere processes are a widespread, quantitatively important driver of SOM decomposition and nutrient release at the ecosystem scale, with potential consequences for global C stocks and vegetation feedbacks to climate.

Journal ArticleDOI
TL;DR: Predictive understanding of plant species effects on nutrient cycling will require developing new frameworks that are broadened beyond litter decomposition to consider the full litter-soil organic matter (SOM) continuum.
Abstract: In a review published over two decades ago I asserted that, along soil fertility gradients, plant traits change in ways that reinforce patterns of soil fertility and net primary productivity (NPP). I reevaluate this assertion in light of recent research, focusing on feedbacks to NPP operating through litter decomposition. I conclude that mechanisms emerging since my previous review might weaken these positive feedbacks, such as negative effects of nitrogen on decomposition, while others might strengthen them, such as slower decomposition of roots compared to leaf litter. I further conclude that predictive understanding of plant species effects on nutrient cycling will require developing new frameworks that are broadened beyond litter decomposition to consider the full litter–soil organic matter (SOM) continuum.

Journal ArticleDOI
TL;DR: It is shown, using meta-analysis, that on average earthworm presence in agroecosystems leads to a 25% increase in crop yield and a 23% increased in aboveground biomass and this suggests that earthworms stimulate plant growth predominantly through releasing nitrogen locked away in residue and soil organic matter.
Abstract: To meet the challenge of feeding a growing world population with minimal environmental impact, we need comprehensive and quantitative knowledge of ecological factors affecting crop production. Earthworms are among the most important soil dwelling invertebrates. Their activity affects both biotic and abiotic soil properties, in turn affecting plant growth. Yet, studies on the effect of earthworm presence on crop yields have not been quantitatively synthesized. Here we show, using meta-analysis, that on average earthworm presence in agroecosystems leads to a 25% increase in crop yield and a 23% increase in aboveground biomass. The magnitude of these effects depends on presence of crop residue, earthworm density and type and rate of fertilization. The positive effects of earthworms become larger when more residue is returned to the soil, but disappear when soil nitrogen availability is high. This suggests that earthworms stimulate plant growth predominantly through releasing nitrogen locked away in residue and soil organic matter. Our results therefore imply that earthworms are of crucial importance to decrease the yield gap of farmers who can't -or won't- use nitrogen fertilizer.

Journal ArticleDOI
TL;DR: In this paper, the authors reviewed crop residue management practices, mainly surface retention, incorporation or removal, describing their advantages and limitations in cereal-based agroecosystems in developing countries.

Journal ArticleDOI
Nan Yan, Petra Marschner1, Wenhong Cao, Changqing Zuo, Wei Qin 
TL;DR: In this paper, the effects of soil salinity and water content on microbes are discussed to guide future research into management of saline soils, which is important for crop production, sustainable land use and rehabilitation of saline soil.

Journal ArticleDOI
TL;DR: A review of the available research on how salt affects decomposer microbial communities and carbon cycling in soil can be found in this paper, where the authors provide a brief overview and qualification of widely applied methods to assess microorganisms in soil to date.
Abstract: Salinization of soil is recognised as one of the most pressing environmental challenges to resolve for the next century. We here conduct a synoptic review of the available research on how salt affects decomposer microbial communities and carbon (C) cycling in soil. After summarizing known physiological responses of microorganisms to salinity, we provide a brief overview and qualification of a selection of widely applied methods to assess microorganisms in soil to date. The dominant approaches to characterise microbial responses to salt exposure have so far been microbial biomass and respiration measurements. We compile datasets from a selection of studies and find that (1) microbial biomass-carbon (C) per C held in soil organic matter shows no consistent pattern with long-term (field gradients) or short-term (laboratory additions) soil salinity level, and (2) respiration per soil organic C is substantially inhibited by higher salt concentrations in soil, and consistently so for both short-term and long-term salinity levels. Patterns that emerge from extra-cellular enzyme assessments are more difficult to generalize, and appear to vary with the enzyme studied, and its context. Growth based assessments of microbial responses to salinization are largely lacking. Relating the established responses of microbial respiration to that of growth could provide an estimate for how the microbial C-use efficiency would be affected by salt exposure. This would be a valuable predictor for changes in soil C sequestration. A few studies have investigated the connection between microbial tolerance to salt and the soil salinity levels, but so far results have not been conclusive. We predict that more systematic inquiries including comprehensive ranges of soil salinities will substantiate a connection between soil salinity and microbial tolerance to salt. This would confirm that salinity has a direct effect on the composition of microbial communities. While salt has been identified as one of the most powerful environmental factors to structure microbial communities in aquatic environments, no up-to-date sequence based assessments currently exist from soil. Filling this gap should be a research priority. Moreover, linking sequencing based assessments of microbial communities to their tolerance to salt would have the potential to yield biomarker sets of microbial sequences. This could provide predictive power for, e.g., the sensitivity of agricultural soils to salt exposure, and, as such, a useful tool for soil resource management. We conclude that salt exposure has a powerful influence on soil microbial communities and processes. In addition to being one of the most pressing agricultural problems to solve, this influence could also be used as an experimental probe to better understand how microorganisms control the biogeochemistry in soil. (C) 2014 Elsevier Ltd. All rights reserved. (Less)

Journal ArticleDOI
TL;DR: The plow-based agriculture has exacerbated the problems of accelerated soil erosion by water and wind, oxidation of SOM, and decline in soil structure (aggregation) and tilth.
Abstract: T he quantum jump in food production and progress toward elimination of mass starvation have been driven by mechanization of plowing and other farm operations, introduction of input-responsive varieties, use of chemical fertilizers along with herbicides and pesticides, increase in supplemental irrigation, and reliance on information and communication technology. Notable among the consequences of the agricultural revolution between 1960 and 2015 are increase in (1) human population from 3 billion to 7.3 billion (United Nations 2014); (2) atmospheric concentration of carbon dioxide (CO2) from 316 ppm to 400 ppm (IPCC 2014); (3) global temperature by 0.12°C (0.22°F) per decade (IPCC 2014); (4) problems of soil degradation by erosion, salinization, depletion of soil organic matter (SOM), and nutrient imbalance (Bai et al. 2008); (5) depletion, pollution, and eutrophication of natural waters; and (6) risk of extinction of soils (Tenseson 2014) and species. Yet, food production must be increased by another 1 billion t (1.1 billion tn) by 2050, while also restoring the degraded soils and ecosystems, reducing net anthropogenic emissions, and improving the environment. Plow-based agriculture has exacerbated the problems of accelerated soil erosion by water and wind, oxidation of SOM, and decline in soil structure (aggregation) and tilth. The plow-related problems…

Journal ArticleDOI
Abstract: Sugars are the most abundant organic compounds in the biosphere because they are monomers of all polysaccharides. We summarize the results of the last 40 years on the sources, content, composition and fate of sugars in soil and discuss their main functions. We especially focus on sugar uptake, utilization and recycling by microorganisms as this is by far the dominating process of sugar transformation in soil compared to sorption, leaching or plant uptake. Moreover, sugars are the most important carbon (C) and energy source for soil microorganisms. Two databases have been created. The 1st database focused on the contents of cellulose, non-cellulose, hot-water and cold-water extractable sugars in soils (348 data, 32 studies). This enabled determining the primary (plant-derived) and secondary (microbially and soil organic matter (SOM) derived) sources of carbohydrates in soil based on the galactose + mannose/arabinose + xylose (GM/AX) ratio. The 2nd database focused on the fate of sugar C in soils (734 data pairs, 32 studies using 13 C or 14 C labeled sugars). 13 C and 14 C dynamics enabled calculating the: 1) initial rate of sugar mineralization, 2) mean residence time (MRT) of C of the applied sugars, and 3) MRT of sugar C incorporated into 3a) microbial biomass and 3b) SOM. The content of hexoses was 3–4 times higher than pentoses, because hexoses originate from plants and microorganisms. The GM/AX ratio of non-cellulose sugars revealed a lower contribution of hexoses in cropland and grassland (ratio 0.7–1) compare to forest (ratio 1.5) soils. 13 C and 14 C studies showed very high initial rate of glucose mineralization (1.1% min −1 ) and much higher rate of sugars uptake by microorganisms from the soil solution. Considering this rate along with the glucose input from plants and its content in soil solution, we estimate that only about 20% of all sugars in soil originate from the primary source – decomposition of plant litter and rhizodeposits. The remaining 80% originates from the secondary source – microorganisms and their residues. The estimated MRT of sugar C in microbial biomass was about 230 days, showing intense and efficient internal recycling within microorganisms. The assessed MRT of sugar C in SOM was about 360 days, reflecting the considerable accumulation of sugar C in microbial residues and its comparatively slow external recycling. The very rapid uptake of sugars by microorganisms and intensive recycling clearly demonstrate the importance of sugars for microbes in soil. We speculate that the most important functions of sugars in soil are to maintain and stimulate microbial activities in the rhizosphere and detritusphere leading to mobilization of nutrients by accelerated SOM decomposition – priming effects. We conclude that the actual contribution of sugar C (not only whole sugar molecules, which are usually determined) to SOM is much higher than the 10 ± 5% commonly measured based on their content.

Journal ArticleDOI
TL;DR: Soil mulching can significantly increase maize and wheat yields, WUE and NUE, and thereby may contribute to closing the yield gap between attainable and actual yields, especially in dryland and low nutrient input agriculture.
Abstract: Global crop yields are limited by water and nutrient availability. Soil mulching (with plastic or straw) reduces evaporation, modifies soil temperature and thereby affects crop yields. Reported effects of mulching are sometimes contradictory, likely due to differences in climatic conditions, soil characteristics, crop species, and also water and nitrogen (N) input levels. Here we report on a meta-analysis of the effects of mulching on wheat and maize, using 1310 yield observations from 74 studies conducted in 19 countries. Our results indicate that mulching significantly increased yields, WUE (yield per unit water) and NUE (yield per unit N) by up to 60%, compared with no-mulching. Effects were larger for maize than wheat, and larger for plastic mulching than straw mulching. Interestingly, plastic mulching performed better at relatively low temperature while straw mulching showed the opposite trend. Effects of mulching also tended to decrease with increasing water input. Mulching effects were not related to soil organic matter content. In conclusion, soil mulching can significantly increase maize and wheat yields, WUE and NUE, and thereby may contribute to closing the yield gap between attainable and actual yields, especially in dryland and low nutrient input agriculture. The management of soil mulching requires site-specific knowledge.

Journal ArticleDOI
TL;DR: A divergence in soil organic carbon (C) and nitrogen (N) content over 7 years is demonstrated in a field experiment that compared rotational strip intercrop systems and ordinary crop rotations to indicate soil C sequestration potential of strip intercropping is similar in magnitude to that of currently recommended management practises to conserve organic matter in soil.
Abstract: Intercropping, the simultaneous cultivation of multiple crop species in a single field, increases aboveground productivity due to species complementarity. We hypothesized that intercrops may have greater belowground productivity than sole crops, and sequester more soil carbon over time due to greater input of root litter. Here, we demonstrate a divergence in soil organic carbon (C) and nitrogen (N) content over 7 years in a field experiment that compared rotational strip intercrop systems and ordinary crop rotations. Soil organic C content in the top 20 cm was 4% +- 1% greater in intercrops than in sole crops, indicating a difference in C sequestration rate between intercrop and sole crop systems of 184 +- 86 kg C ha-1 yr-1. Soil organic N content in the top 20 cm was 11% +- 1% greater in intercrops than in sole crops, indicating a difference in N sequestration rate between intercrop and sole crop systems of 45 +- 10 kg N ha-1 yr-1. Total root biomass in intercrops was on average 23% greater than the average root biomass in sole crops, providing a possible mechanism for the observed divergence in soil C sequestration between sole crop and intercrop systems. A lowering of the soil d15N signature suggested that increased biological N fixation and/or reduced gaseous N losses contributed to the increases in soil N in intercrop rotations with faba bean. Increases in soil N in wheat/maize intercrop pointed to contributions from a broader suite of mechanisms for N retention, e.g., complementary N uptake strategies of the intercropped plant species. Our results indicate that soil C sequestration potential of strip intercropping is similar in magnitude to that of currently recommended management practises to conserve organic matter in soil. Intercropping can contribute to multiple agroecosystem services by increased yield, better soil quality and soil C sequestration.

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TL;DR: Evidence of the influence of evergreen gymnosperm (EG) and deciduous angiosperm (DA) tree species on the water balance, physical–chemical soil properties and biogeochemical cycling of carbon and nutrients is reviewed.
Abstract: It has been recognized for a long time that the overstorey composition of a forest partly determines its biological and physical-chemical functioning. Here, we review evidence of the influence of evergreen gymnosperm (EG) tree species and deciduous angiosperm (DA) tree species on the water balance, physical-chemical soil properties and biogeochemical cycling of carbon and nutrients. We used scientific publications based on experimental designs where all species grew on the same parent material and initial soil, and were similar in stage of stand development, former land use and current management. We present the current state of the art, define knowledge gaps, and briefly discuss how selection of tree species can be used to mitigate pollution or enhance accumulation of stable organic carbon in the soil. The presence of EGs generally induces a lower rate of precipitation input into the soil than DAs, resulting in drier soil conditions and lower water discharge. Soil temperature is generally not different, or slightly lower, under an EG canopy compared to a DA canopy. Chemical properties, such as soil pH, can also be significantly modified by taxonomic groups of tree species. Biomass production is usually similar or lower in DA stands than in stands of EGs. Aboveground production of dead organic matter appears to be of the same order of magnitude between tree species groups growing on the same site. Some DAs induce more rapid decomposition of litter than EGs because of the chemical properties of their tissues, higher soil moisture and favourable conditions for earthworms. Forest floors consequently tend to be thicker in EG forests compared to DA forests. Many factors, such as litter lignin content, influence litter decomposition and it is difficult to identify specific litter-quality parameters that distinguish litter decomposition rates of EGs from DAs. Although it has been suggested that DAs can result in higher accumulation of soil carbon stocks, evidence from field studies does not show any obvious trend. Further research is required to clarify if accumulation of carbon in soils (i.e. forest floor + mineral soil) is different between the two types of trees. Production of belowground dead organic matter appears to be of similar magnitude in DA and EG forests, and root decomposition rate lower under EGs than DAs. However there are some discrepancies and still are insufficient data about belowground pools and processes that require further research. Relatively larger amounts of nutrients enter the soil-plant biogeochemical cycle under the influence of EGs than DAs, but recycling of nutrients appears to be slightly enhanced by DAs. Understanding the mechanisms underlying forest ecosystem functioning is essential to predicting the consequences of the expected tree species migration under global change. This knowledge can also be used as a mitigation tool regarding carbon sequestration or management of surface waters because the type of tree species affects forest growth, carbon, water and nutrient cycling.