Upper ontology

About: Upper ontology is a research topic. Over the lifetime, 9767 publications have been published within this topic receiving 220721 citations. The topic is also known as: top-level ontology & foundation ontology.

Matching large ontologies: A divide-and-conquer approach

Abstract: Ontologies proliferate with the progress of the Semantic Web. Ontology matching is an important way of establishing interoperability between (Semantic) Web applications that use different but related ontologies. Due to their sizes and monolithic nature, large ontologies regarding real world domains bring a new challenge to the state of the art ontology matching technology. In this paper, we propose a divide-and-conquer approach to matching large ontologies. We develop a structure-based partitioning algorithm, which partitions entities of each ontology into a set of small clusters and constructs blocks by assigning RDF Sentences to those clusters. Then, the blocks from different ontologies are matched based on precalculated anchors, and the block mappings holding high similarities are selected. Finally, two powerful matchers, V-Doc and Gmo, are employed to discover alignments in the block mappings. Comprehensive evaluation on both synthetic and real world data sets demonstrates that our approach both solves the scalability problem and achieves good precision and recall with significant reduction of execution time.

Semantic Similarity Measures as Tools for Exploring the Gene Ontology

Abstract: Many bioinformatics resources hold data in the form of sequences. Often this sequence data is associated with a large amount of annotation. In many cases this data has been hard to model, and has been represented as scientific natural language, which is not readily computationally amenable. The development of the Gene Ontology provides us with a more accessible representation of some of this data. However it is not clear how this data can best be searched, or queried. Recently we have adapted information content based measures for use with the Gene Ontology (GO). In this paper we present detailed investigation of the properties of these measures, and examine various properties of GO, which may have implications for its future design.

Ontology Research and Development. Part 1-A Review of Ontology Generation.

Abstract: Ontology is an important emerging discipline that has the huge potential to improve information organization, management and understanding. It has a crucial role to play in enabling content-based access, interoperability, communications, and providing qualitatively new levels of services on the next wave of web transformation in the form of the Semantic Web. The issues pertaining to ontology generation, mapping and maintenance are critical key areas that need to be understood and addressed. This survey is presented in two parts. The first part reviews the state-of-the-art techniques and work done on semi-automatic and automatic ontology generation, as well as the problems facing such research. The second complementary survey is dedicated to ontology mapping and ontology ‘evolving’. Through this survey, we have identified that shallow information extraction and natural language processing techniques are deployed to extract concepts or classes from free-text or semi-structured data. However, relation extrac...

Ontology Engineering in a Networked World

Abstract: The Semantic Web is characterized by the existence of a very large number of distributed semantic resources, which together define a network of ontologies. These ontologies in turn are interlinked through a variety of different meta-relationships such as versioning, inclusion, and many more. This scenario is radically different from the relatively narrow contexts in which ontologies have been traditionally developed and applied, and thus calls for new methods and tools to effectively support the development of novel network-oriented semantic applications. This book by Surez-Figueroa et al. provides the necessary methodological and technological support for the development and use of ontology networks, which ontology developers need in this distributed environment. After an introduction, in its second part the authors describe the NeOn Methodology framework. The books third part details the key activities relevant to the ontology engineering life cycle. For each activity, a general introduction, methodological guidelines, and practical examples are provided. The fourth part then presents a detailed overview of the NeOn Toolkit and its plug-ins. Lastly, case studies from the pharmaceutical and the fishery domain round out the work. The book primarily addresses two main audiences: students (and their lecturers) who need a textbook for advanced undergraduate or graduate courses on ontology engineering, and practitioners who need to develop ontologies in particular or Semantic Web-based applications in general. Its educational value is maximized by its structured approach to explaining guidelines and combining them with case studies and numerous examples. The description of the open source NeOn Toolkit provides an additional asset, as it allows readers to easily evaluate and apply the ideas presented.