Upper ontology

About: Upper ontology is a research topic. Over the lifetime, 9767 publications have been published within this topic receiving 220721 citations. The topic is also known as: top-level ontology & foundation ontology.

The Ontology of Tasks and Methods

Abstract: Much of the work on ontologies in AI has focused on describing some aspect of reality: objects, relations, states of affairs, events, and processes in the world. A goal is to make knowledge sharable, by encoding domain knowledge using a standard vocabulary based on the ontology. A parallel attempt at identifying the ontology of problem-solving knowledge would make it possible .to share problem-solving methods. For example, when one is dealing with a type of problem known as abductive inference, the following are some of the terms that recur in the representation of problem-solving methods: hypotheses, explanatory coverage, evidence, degree of confidence, plausibility, composite hypothesis, etc. Method ontology, in good part, is task- and method-specific. "Generic Tasks," "Heuristic Classification," "Task-specific Architectures," and "Task Structures" are representative bodies of work in the knowledgesystems area that have focused on problem-solving methods. However, connections have not been made to work that is explicitly concerned with ontologies. Making such connections is the goal of this paper.

The ontology of the gene ontology.

Abstract: The rapidly increasing wealth of genomic data has driven the development of tools to assist in the task of representing and processing information about genes, their products and their functions. One of the most important of these tools is the Gene Ontology (GO), which is being developed in tandem with work on a variety of bioinformatics databases. An examination of the structure of GO, however, reveals a number of problems, which we believe can be resolved by taking account of certain organizing principles drawn from philosophical ontology. We shall explore the results of applying such principles to GO with a view to improving GO's consistency and coherence and thus its future applicability in the automated processing of biological data.

An ontology of scientific experiments

Abstract: The formal description of experiments for efficient analysis, annotation and sharing of results is a fundamental part of the practice of science. Ontologies are required to achieve this objective. A few subject-specific ontologies of experiments currently exist. However, despite the unity of scientific experimentation, no general ontology of experiments exists. We propose the ontology EXPO to meet this need. EXPO links the SUMO (the Suggested Upper Merged Ontology) with subject-specific ontologies of experiments by formalizing the generic concepts of experimental design, methodology and results representation. EXPO is expressed in the W3C standard ontology language OWL-DL. We demonstrate the utility of EXPO and its ability to describe different experimental domains, by applying it to two experiments: one in high-energy physics and the other in phylogenetics. The use of EXPO made the goals and structure of these experiments more explicit, revealed ambiguities, and highlighted an unexpected similarity. We conclude that, EXPO is of general value in describing experiments and a step towards the formalization of science.

On how to perform a gold standard based evaluation of ontology learning

Abstract: In recent years several measures for the gold standard based evaluation of ontology learning were proposed. They can be distinguished by the layers of an ontology (e.g. lexical term layer and concept hierarchy) they evaluate. Judging those measures with a list of criteria we show that there exist some measures sufficient for evaluating the lexical term layer. However, existing measures for the evaluation of concept hierarchies fail to meet basic criteria. This paper presents a new taxonomic measure which overcomes the problems of current approaches.