Showing papers on "Water column published in 2012"

Carbon dioxide and methane emissions from the Yukon River system

Abstract: [1] Carbon dioxide (CO2) and methane (CH4) emissions are important, but poorly quantified, components of riverine carbon (C) budgets. This is largely because the data needed for gas flux calculations are sparse and are spatially and temporally variable. Additionally, the importance of C gas emissions relative to lateral C exports is not well known because gaseous and aqueous fluxes are not commonly measured on the same rivers. We couple measurements of aqueous CO2 and CH4 partial pressures (pCO2, pCH4) and flux across the water-air interface with gas transfer models to calculate subbasin distributions of gas flux density. We then combine those flux densities with remote and direct observations of stream and river water surface area and ice duration, to calculate C gas emissions from flowing waters throughout the Yukon River basin. CO2 emissions were 7.68 Tg C yr−1 (95% CI: 5.84 −10.46), averaging 750 g C m−2 yr−1 normalized to water surface area, and 9.0 g C m−2 yr−1 normalized to river basin area. River CH4 emissions totaled 55 Gg C yr−1 or 0.7% of the total mass of C emitted as CO2 plus CH4 and ∼6.4% of their combined radiative forcing. When combined with lateral inorganic plus organic C exports to below head of tide, C gas emissions comprised 50% of total C exported by the Yukon River and its tributaries. River CO2 and CH4 derive from multiple sources, including groundwater, surface water runoff, carbonate equilibrium reactions, and benthic and water column microbial processing of organic C. The exact role of each of these processes is not yet quantified in the overall river C budget.

Global Contraction of Antarctic Bottom Water between the 1980s and 2000s

Abstract: A statistically significant reduction in Antarctic Bottom Water (AABW) volume is quantified between the 1980s and 2000s within the Southern Ocean and along the bottom-most, southern branches of the meridional overturning circulation (MOC). AABW has warmed globally during that time, contributing roughly 10% of the recent total ocean heat uptake. This warming implies a global-scale contraction of AABW. Rates of change in AABW-related circulation are estimated in most of the world’s deep-ocean basins by finding average rates of volume loss or gain below cold, deep potential temperature (θ) surfaces using all available repeated hydrographic sections. The Southern Ocean is losing water below θ = 0°C at a rate of −8.2 (±2.6) × 106 m3 s−1. This bottom water contraction causes a descent of potential isotherms throughout much of the water column until a near-surface recovery, apparently through a southward surge of Circumpolar Deep Water from the north. To the north, smaller losses of bottom waters are see...

Aerobic Microbial Respiration in 86-Million-Year-Old Deep-Sea Red Clay

Abstract: Living microbes have been discovered many meters into marine sediments. On a cruise in the North Pacific Gyre, Roy et al. (p. [922][1]) discovered that oxygen occurred for tens of meters into the sediment. The bacteria living in these sediments were respiring the oxygen but at a slower rate than the supply of organic material dropping out of the water column, allowing these ancient deep marine sediments to remain oxygenated. Modeling showed that the rate of respiration of specific carbon decreased as a function of sediment depth, that is, its age. Thus aerobic metabolism can persist in deep marine sediments. [1]: /lookup/doi/10.1126/science.1219424

Global distribution and diversity of marine Verrucomicrobia

Abstract: Verrucomicrobia is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial community composition in 506 samples from the International Census of Marine Microbes as well as 11 coastal samples taken from the California Current. These samples from both the water column and sediments covered a wide range of environmental conditions. Verrucomicrobia were present in 98% of the analyzed samples, and thus appeared nearly ubiquitous in the ocean. Based on the occurrence of amplified 16S ribosomal RNA sequences, Verrucomicrobia constituted on average 2% of the water column and 1.4% of the sediment bacterial communities. The diversity of Verrucomicrobia displayed a biogeography at multiple taxonomic levels and thus, specific lineages appeared to have clear habitat preference. We found that subdivision 1 and 4 generally dominated marine bacterial communities, whereas subdivision 2 was more frequent in low salinity waters. Within the subdivisions, Verrucomicrobia community composition were significantly different in the water column compared with sediment as well as within the water column along gradients of salinity, temperature, nitrate, depth and overall water column depth. Although we still know little about the ecophysiology of Verrucomicrobia lineages, the ubiquity of this phylum suggests that it may be important for the biogeochemical cycle of carbon in the ocean.

Net removal of major marine dissolved organic carbon fractions in the subsurface ocean

Abstract: [1] Marine dissolved organic matter is a massive reservoir of carbon holding >200x the ocean biomass inventory. Primarily produced at the ocean surface and then exported to depth with overturn of the water column, this carbon can be sequestered in the ocean interior for centuries. Understanding the loss of dissolved organic carbon (DOC) upon export has been data limited, but recent global ocean surveys are overcoming that problem. Here we characterize three fractions of exported carbon by apparent continuity in removal rates: semi-labile and semi-refractory, summing to 20 PgC, and the balance as refractory DOC. Distinct lifetimes coupled with ocean circulation control where the fractions are exported to depth, and thus the carbon sequestration time scales. Maximum remineralization rates of exported DOC occur in the convergent subtropical gyres, where a range of ∼500 to <1500 mmol C m−2 yr−1 can exceed remineralization of sinking biogenic particles. Regions of high particle export production and highly stratified systems exhibit minimal exported DOC remineralization.

Quantification of ammonia oxidation rates and ammonia‐oxidizing archaea and bacteria at high resolution in the Gulf of California and eastern tropical North Pacific Ocean

Abstract: Ammonia-oxidizing microorganisms compete with phytoplankton for reduced nitrogen in the euphotic zone and provide oxidized nitrogen to other microbes present in the sea. We report 15NH z oxidation rate measurements made at 5–20-m resolution using an in situ array and quantification of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in corresponding samples from the upper water column and oxygen minimum zone (OMZ) of the Gulf of California (GOC) and eastern tropical North Pacific Ocean (ETNP). 15NH z oxidation rates varied substantially with depth and between stations: they were greatest at the base of the euphotic zone, and maximum rates were up to 28-fold greater than rates measured within 5–10 m. Pyrosequencing and quantitative polymerase chain reactions (QPCR) indicated that AOA were present throughout the water column at all latitudes and always outnumbered AOB. AOB constituted only 39 of 432,240 16S ribosomal ribonucleic acid gene sequences produced via pyrosequencing but were more abundant at greater depths and higher latitudes. 15NH z oxidation rates were correlated with AOA abundance at some stations and were detectable in 96% of samples, including depths where oxygen concentrations were , 5 mmol kg21 and depths within the euphotic zone, where up to 42% of ammonia oxidation occurred. Ammonia is rapidly oxidized within discrete depth intervals in the GOC and ETNP; while pyrosequencing and QPCR demonstrate that AOB are confined to deeper portions of the water column, AOA appear to be active within the euphotic zone, where they may quickly respond to nitrogen inputs.

Characterization of heavy metals in water and sediments in Taihu Lake, China

Abstract: To explore a comprehensive status of heavy metals in the Taihu Lake, which is one of the most important waters in China, water and sediment samples were taken throughout the lake during April to May of 2010, and metal elements (Cu, Cd, Cr, Ni, Pb, Sn, Sb, Zn, Mn) were analyzed in the water column, interstitial water and sediment. Relevant standards were used to assess the sediment and water quality. Results show that, in the lake water column, the average concentration of all metals ranged from 0.047 μg/l (Cd) to 8.778 μg/l (Zn). The concentration in the river water was usually higher than in the lake water for many metals. In the interstitial water Mn was significantly higher than that in water column, and other metals had no significant difference between the two media. In the surface sediment, average metal content ranged from 1.325 mg/kg (Cd) to 798.2 mg/kg (Mn). Spatially, contents of many metals were higher in Zhushan Bay than in other lake areas, and there existed a clear content gradient from the river to the lake for both water and sediment. On the sediment profiles, many metals presented an increasing trend from the depth of 15–20 cm to the top, which is indicative of the impact of increasingly intensive human activities from that period. Quality assessment indicates that metals in water phase are generally safe compared with USEPA “National Recommended Water Quality Criteria,” with the exception of Mn in the interstitial water and Sb in the river water. Whereas the sediment is widely contaminated with metals to some extent compared with the “Consensus-Based Sediment Quality Guidelines,” and Cu, Cr, and Ni are more likely to raise ecological risks. This work could be a basis for the ongoing China’s criteria strategy.

Global rates of water-column denitrification derived from nitrogen gas measurements

Abstract: Biologically available nitrogen limits phytoplankton growth over much of the ocean. Data-constrained model simulations suggest that bioavailable nitrogen losses match gains in the global ocean, indicative of a balanced budget.

Robust empirical relationships for estimating the carbonate system in the southern California Current System and application to CalCOFI hydrographic cruise data (2005–2011)

Abstract: [1] The California Current System (CCS) is expected to experience the ecological impacts of ocean acidification (OA) earlier than most other ocean regions because coastal upwelling brings old, CO2-rich water relatively close to the surface ocean. Historical inorganic carbon measurements are scarce, so the progression of OA in the CCS is unknown. We used a multiple linear regression approach to generate empirical models using oxygen (O2), temperature (T), salinity (S), and sigma theta (σθ) as proxy variables to reconstruct pH, carbonate saturation states, carbonate ion concentration ([CO32−]), dissolved inorganic carbon (DIC) concentration, and total alkalinity (TA) in the southern CCS. The calibration data included high-quality measurements of carbon, oxygen, and other hydrographic variables, collected during a cruise from British Columbia to Baja California in May–June 2007. All resulting empirical relationships were robust, withr2values >0.92 and low root mean square errors. Estimated and measured carbon chemistry matched very well for independent data sets from the CalCOFI and IMECOCAL programs. Reconstructed CCS pH and saturation states for 2005–2011 reveal a pronounced seasonal cycle and inter-annual variability in the upper water column. Deeper in the water column, conditions are stable throughout the annual cycle, with perennially low pH and saturation states. Over sub-decadal time scales, these empirical models provide a valuable tool for reconstructing carbonate chemistry related to ocean acidification where direct observations are limited. However, progressive increases in anthropogenic CO2 content of southern CCS water masses must be carefully addressed to apply the models over longer time scales.

Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake.

Abstract: Freshwater habitats have been identified as one of the largest reservoirs of archaeal genetic diversity, with specific lineages of ammonia-oxidizing archaea (AOA) populations different from soils and seas. The ecology and biology of lacustrine AOA is, however, poorly known. In the present study, vertical changes in archaeal abundance by CARD-FISH, quantitative PCR (qPCR) analyses and identity by clone libraries were correlated with environmental parameters in the deep glacial high-altitude Lake Redon. The lake is located in the central Spanish Pyrenees where atmospheric depositions are the main source of reactive nitrogen. Strong correlations were found between abundance of thaumarchaeotal 16S rRNA gene, archaeal amoA gene and nitrite concentrations, indicating an ammonium oxidation potential by these microorganisms. The bacterial amoA gene was not detected. Three depths with potential ammonia-oxidation activity were unveiled along the vertical gradient, (i) on the top of the lake in winter–spring (that is, the 0 oC slush layers above the ice-covered sheet), (ii) at the thermocline and (iii) the bottom waters in summer—autumn. Overall, up to 90% of the 16S rRNA gene sequences matched Thaumarchaeota, mostly from both the Marine Group (MG) 1.1a (Nitrosoarchaeum-like) and the sister clade SAGMGC−1 (Nitrosotalea-like). Clone-libraries analysis showed the two clades changed their relative abundances with water depth being higher in surface and lower in depth for SAGMGC−1 than for MG 1.1a, reflecting a vertical phylogenetic segregation. Overall, the relative abundance and recurrent appearance of SAGMGC−1 suggests a significant environmental role of this clade in alpine lakes. These results expand the set of ecological and thermal conditions where Thaumarchaeota are distributed, unveiling vertical positioning in the water column as a key factor to understand the ecology of different thaumarchaeotal clades in lacustrine environments.

Food Web Structure of the Alaskan Nearshore Shelf and Estuarine Lagoons of the Beaufort Sea

Abstract: The eastern Alaska Beaufort Sea coast is characterized by numerous shallow (2–5 m) estuarine lagoons, fed by streams and small rivers that drain northward from the Brooks Range through the arctic coastal plain, and bounded seaward by barrier islands and shoals. Millions of birds from six continents nest and forage during the summer period in this region using the river deltas, lagoons, and shoreline along with several species of anadromous and marine fish. We examined biogeochemical processes linking the benthic community to the overall food web structure of these poorly studied but pristine estuaries, which are largely covered by 1.8 m of ice for 10 months annually. In summer, these lagoons are relatively warm with brackish salinities (5–10°C, S = 10–25) compared to more open coastal waters (0–5°C, S > 27). The stable isotopic composition of organic materials in sediments (i.e., benthic particulate organic matter) and water column suspended particulate organic matter from both streams and lagoons are largely indistinguishable and reflect strong terrestrial contributions, based upon δ13C and δ15N values (−25.6‰ to −27.4‰ and 1.4‰ to 3.3‰, respectively). By comparison, shifts toward more heavy isotope-enriched organic materials reflecting marine influence are observed on the adjacent coastal shelf (−24.8‰ to −25.4‰ and 3.4‰ to 5.3‰, respectively). The isotopic composition of lagoon fauna is consistent with a food web dominated by omnivorous detritovores strongly dependent on microbial processing of terrestrial sources of carbon. Biomagnification of 15N in benthic organisms indicate that the benthic food web in lagoons support up to four trophic levels, with carnivorous gastropod predators and benthic fishes (δ15N values up to 14.4‰) at the apex.

Effect of oxygen minimum zone formation on communities of marine protists.

Abstract: Changes in ocean temperature and circulation patterns compounded by human activities are leading to oxygen minimum zone (OMZ) expansion with concomitant alteration in nutrient and climate active trace gas cycling Here, we report the response of microbial eukaryote populations to seasonal changes in water column oxygen-deficiency using Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island British Columbia, as a model ecosystem We combine small subunit ribosomal RNA gene sequencing approaches with multivariate statistical methods to reveal shifts in operational taxonomic units during successive stages of seasonal stratification and renewal A meta-analysis is used to identify common and unique patterns of community composition between Saanich Inlet and the anoxic/sulfidic Cariaco Basin (Venezuela) and Framvaren Fjord (Norway) to show shared and unique responses of microbial eukaryotes to oxygen and sulfide in these three environments Our analyses also reveal temporal fluctuations in rare populations of microbial eukaryotes, particularly anaerobic ciliates, that may be of significant importance to the biogeochemical cycling of methane in OMZs

Nearshore internal bores and turbulent mixing in southern Monterey Bay

Abstract: [1] We observed transient stratification and mixing events associated with nearshore internal bores in southern Monterey Bay using an array of instruments with high spatial and temporal resolution. The arrival of the bores is characterized by surging masses of dense (cold) water that tend to stratify the water column. The bore is followed by a gradual drop in the temperature throughout the water column over several hours (defined here as the bore period) until a sharp warm-front relaxation, followed by high frequency temperature fluctuations, returns the column back to nearly its original state (defined here as the mixing period). Mixing periods revealed increased temperature variance at high frequencies (ω > N¯), as well as a greater percentage of events where dynamic instabilities may be present (Ri< 0.25), suggesting active mixing of the stratified water column. Turbulent dissipation rates in the stratified interior during the mixing period, estimated using the technique of isopycnal slope spectra, revealed mean values the same order of magnitude as near-bed bottom-generated turbulence. Observations indicate that local shear-produced turbulent kinetic energy by the warm front relaxations dominates mixing in the stratified interior. The non-canonical nature of these bore and relaxation events is also investigated with a numerical model, and the dynamics are shown to depend on the internal Iribarren number. Our results suggest that nearshore internal bores interacting with local bathymetry dramatically alter local dynamics and mixing in the nearshore with important ecological implications.

Spatial Variability of Benthic-Pelagic Coupling in an Estuary Ecosystem: Consequences for Microphytobenthos Resuspension Phenomenon

Abstract: The high degree of physical factors in intertidal estuarine ecosystem increases material processing between benthic and pelagic compartments. In these ecosystems, microphytobenthos resuspension is a major phenomenon since its contribution to higher trophic levels can be highly significant. Understanding the sediment and associated microphytobenthos resuspension and its fate in the water column is indispensable for measuring the food available to benthic and pelagic food webs. To identify and hierarchize the physical/biological factors potentially involved in MPB resuspension, the entire intertidal area and surrounding water column of an estuarine ecosystem, the Bay des Veys, was sampled during ebb tide. A wide range of physical parameters (hydrodynamic regime, grain size of the sediment, and suspended matter) and biological parameters (flora and fauna assemblages, chlorophyll) were analyzed to characterize benthic-pelagic coupling at the bay scale. Samples were collected in two contrasted periods, spring and late summer, to assess the impact of forcing variables on benthic-pelagic coupling. A mapping approach using kriging interpolation enabled us to overlay benthic and pelagic maps of physical and biological variables, for both hydrological conditions and trophic indicators. Pelagic Chl a concentration was the best predictor explaining the suspension-feeders spatial distribution. Our results also suggest a perennial spatio-temporal structure of both benthic and pelagic compartments in the ecosystem, at least when the system is not imposed to intense wind, with MPB distribution controlled by both grain size and bathymetry. The benthic component appeared to control the pelagic one via resuspension phenomena at the scale of the bay. Co-inertia analysis showed closer benthic-pelagic coupling between the variables in spring. The higher MPB biomass observed in summer suggests a higher contribution to filter-feeders diets, indicating a higher resuspension effect in summer than in spring, in turn suggesting an important role of macrofauna bioturbation and filter feeding (Cerastoderma edule).

Initial identification of heavy metals contamination in Taihu Lake, a eutrophic lake in China.

Abstract: A detailed investigation of seven heavy metals (Cu, Cd, Cr, As, Pb, Zn, Ni) in the water column, interstitial water and surface sediment was conducted to quantify the extent of their contamination in Taihu Lake. Results showed the average total concentrations ranged from 0.93 microg/L for Cd to 47.03 microg/L for Zn. The dissolved concentrations in the overlying water ranged from 0.06 microg/L for Cd to 15.86 microg/L for Zn. The metals in the Taihu Lake surface water were primarily in the particulate phase, especially for Cd, whose particulate concentration represented 94.3% of the total. In the surface sediment, the mean concentrations for Cr, Ni, Cu, Zn, As, Cd and Pb were 41.50, 28.72, 27.82, 65.46, 5.94, 0.82 and 41.17 mg/kg, respectively. The metals in the water column and sediments of Taihu Lake displayed significant spatial variations, and the higher metal concentrations mainly occurred in the north and west of Taihu Lake, especially in Zhushan Bay and West Taihu Lake. A quality assessment indicated that most of the metals in the surface water of Taihu Lake had no or low adverse health effects on organisms, except for Pb and Cu, which may cause chronic toxicity. Compared with the "Consensus-Based Sediment Quality Guidelines", the polluting metals were Cr, Ni and Cd, and the polluted regions were confined to Zhushan Bay, Meiliang Bay and the west of Taihu Lake, especially for north of Zhushan Bay. The polluted areas for Cr, Ni and Cd were 14.36, 34.70 and 13.24 km2, respectively. We suggest that Cr, Ni, and Cd in the polluted areas should be addressed and that tissue chemistry and sediment toxicity assessments be performed as soon as possible.

The fingerprint of human-induced changes in the ocean's salinity and temperature fields

Abstract: [1] The ocean's salinity field is driven primarily by evaporation, precipitation, and river discharge, all key elements of the Earth's hydrological cycle. Observations show the salinity field has been changing in recent decades. We perform a formal fingerprint-based detection and attribution analysis of these changes between 1955–2004, 60°S and 60°N, and in the top 700 m of the water column. We find that observed changes are inconsistent with the effects of natural climate variability, either internal to the climate system (such as El Nino and the Pacific Decadal Oscillation) or external (solar fluctuations and volcanic eruptions). However, the observed changes are consistent with the changes expected due to human forcing of the climate system. Joint changes in salinity and temperature yield a stronger signal of human effects on climate than either salinity or temperature alone. When examining individual depth levels, observed salinity changes are unlikely (p < 0.05) to have arisen from natural causes over the top 125 m of the water column, while temperature changes (and joint salinity/temperature changes) are distinct from natural variability over the top 250 m.